Clone Name | bastl21f04 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_462832.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3111 Score = 107 bits (54), Expect = 2e-20 Identities = 63/66 (95%) Strand = Plus / Plus Query: 140 atccggcgccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgc 199 ||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||| Sbjct: 249 atccggcgccatggagaagccgagcacgctgctggtccacttcgacaagggctccgccgc 308 Query: 200 catggc 205 |||||| Sbjct: 309 catggc 314
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 107 bits (54), Expect = 2e-20 Identities = 63/66 (95%) Strand = Plus / Minus Query: 140 atccggcgccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgc 199 ||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||| Sbjct: 10025975 atccggcgccatggagaagccgagcacgctgctggtccacttcgacaagggctccgccgc 10025916 Query: 200 catggc 205 |||||| Sbjct: 10025915 catggc 10025910
>dbj|AP003103.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1085F09 Length = 132713 Score = 107 bits (54), Expect = 2e-20 Identities = 63/66 (95%) Strand = Plus / Minus Query: 140 atccggcgccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgc 199 ||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||| Sbjct: 106257 atccggcgccatggagaagccgagcacgctgctggtccacttcgacaagggctccgccgc 106198 Query: 200 catggc 205 |||||| Sbjct: 106197 catggc 106192
>dbj|AP002862.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0036E02 Length = 145931 Score = 107 bits (54), Expect = 2e-20 Identities = 63/66 (95%) Strand = Plus / Minus Query: 140 atccggcgccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgc 199 ||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||| Sbjct: 120468 atccggcgccatggagaagccgagcacgctgctggtccacttcgacaagggctccgccgc 120409 Query: 200 catggc 205 |||||| Sbjct: 120408 catggc 120403
>gb|AC120539.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0063D09 map S1559, complete sequence Length = 190721 Score = 61.9 bits (31), Expect = 8e-07 Identities = 52/59 (88%) Strand = Plus / Minus Query: 147 gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgccatggc 205 |||||||| ||||| ||||| || || ||||||||||||||||||||| || ||||||| Sbjct: 21432 gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggc 21374
>gb|AC123897.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0055G24 map S20116S, complete sequence Length = 174210 Score = 61.9 bits (31), Expect = 8e-07 Identities = 52/59 (88%) Strand = Plus / Minus Query: 147 gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgccatggc 205 |||||||| ||||| ||||| || || ||||||||||||||||||||| || ||||||| Sbjct: 170897 gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggc 170839
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 61.9 bits (31), Expect = 8e-07 Identities = 52/59 (88%) Strand = Plus / Minus Query: 147 gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgccatggc 205 |||||||| ||||| ||||| || || ||||||||||||||||||||| || ||||||| Sbjct: 3653760 gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggc 3653702
>dbj|AK120719.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002G07, full insert sequence Length = 3332 Score = 61.9 bits (31), Expect = 8e-07 Identities = 52/59 (88%) Strand = Plus / Plus Query: 147 gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgccatggc 205 |||||||| ||||| ||||| || || ||||||||||||||||||||| || ||||||| Sbjct: 111 gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggc 169
>dbj|AK120713.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002A09, full insert sequence Length = 3332 Score = 61.9 bits (31), Expect = 8e-07 Identities = 52/59 (88%) Strand = Plus / Plus Query: 147 gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgccatggc 205 |||||||| ||||| ||||| || || ||||||||||||||||||||| || ||||||| Sbjct: 111 gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggc 169
>dbj|AK072825.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023136B14, full insert sequence Length = 1667 Score = 61.9 bits (31), Expect = 8e-07 Identities = 52/59 (88%) Strand = Plus / Plus Query: 147 gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgccatggc 205 |||||||| ||||| ||||| || || ||||||||||||||||||||| || ||||||| Sbjct: 75 gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggc 133
>dbj|AK069716.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030F21, full insert sequence Length = 3363 Score = 61.9 bits (31), Expect = 8e-07 Identities = 52/59 (88%) Strand = Plus / Plus Query: 147 gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgccatggc 205 |||||||| ||||| ||||| || || ||||||||||||||||||||| || ||||||| Sbjct: 142 gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggc 200
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 61.9 bits (31), Expect = 8e-07 Identities = 52/59 (88%) Strand = Plus / Minus Query: 147 gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgccatggc 205 |||||||| ||||| ||||| || || ||||||||||||||||||||| || ||||||| Sbjct: 3662454 gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggc 3662396
>ref|XM_956946.1| Neurospora crassa OR74A hypothetical protein (NCU08828.1) partial mRNA Length = 2685 Score = 44.1 bits (22), Expect = 0.19 Identities = 22/22 (100%) Strand = Plus / Plus Query: 181 tcgacaagggctccgccgccat 202 |||||||||||||||||||||| Sbjct: 2162 tcgacaagggctccgccgccat 2183
>ref|XM_330944.1| Neurospora crassa OR74A hypothetical protein (NCU08828.1) partial mRNA Length = 2685 Score = 44.1 bits (22), Expect = 0.19 Identities = 22/22 (100%) Strand = Plus / Plus Query: 181 tcgacaagggctccgccgccat 202 |||||||||||||||||||||| Sbjct: 2162 tcgacaagggctccgccgccat 2183
>emb|X80052.1|NCFOX2 N.crassa fox-2 gene Length = 3401 Score = 44.1 bits (22), Expect = 0.19 Identities = 22/22 (100%) Strand = Plus / Plus Query: 181 tcgacaagggctccgccgccat 202 |||||||||||||||||||||| Sbjct: 2665 tcgacaagggctccgccgccat 2686
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 107 cgccgtcgccctccggcgcg 126 |||||||||||||||||||| Sbjct: 612231 cgccgtcgccctccggcgcg 612250 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,082,193 Number of Sequences: 3902068 Number of extensions: 1082193 Number of successful extensions: 18918 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 18832 Number of HSP's gapped (non-prelim): 86 length of query: 237 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 215 effective length of database: 17,147,199,772 effective search space: 3686647950980 effective search space used: 3686647950980 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)