ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl21e12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_466019.1| Oryza sativa (japonica cultivar-group), mRNA 111 1e-21
2gb|AY320037.1| Oryza sativa (japonica cultivar-group) RNA bindin... 111 1e-21
3gb|AY320036.1| Oryza sativa (japonica cultivar-group) RNA bindin... 111 1e-21
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 111 1e-21
5dbj|AP004772.3| Oryza sativa (japonica cultivar-group) genomic D... 111 1e-21
6dbj|AP005749.3| Oryza sativa (japonica cultivar-group) genomic D... 111 1e-21
7dbj|AK065061.1| Oryza sativa (japonica cultivar-group) cDNA clon... 111 1e-21
8dbj|AB078603.1| Pisum sativum SN4TDR mRNA for 110 kDa 4SNc-Tudor... 52 8e-04
9dbj|AB078602.1| Pisum sativum mRNA for 110kDa protein HMP, parti... 52 8e-04
10gb|AF440781.1| Streptomyces cinnamonensis polyether antibiotic m... 44 0.20
11gb|DQ118863.1| Streptomyces fradiae strain NRRL18158 lipopeptide... 40 3.1 
>ref|XM_466019.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3549

 Score =  111 bits (56), Expect = 1e-21
 Identities = 74/80 (92%)
 Strand = Plus / Plus

                                                                       
Query: 158 ggagcttcaggatggctaaggggcaaggtgaaggctgtgacttctggggactgccttctc 217
           ||||| || |||||||| ||||| |||||||||| |||||||||||||||||| ||||||
Sbjct: 237 ggagcgtctggatggctgaggggtaaggtgaagggtgtgacttctggggactgtcttctc 296

                               
Query: 218 atcatggggagcaccaaggc 237
           ||||||||||||||||||||
Sbjct: 297 atcatggggagcaccaaggc 316
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>gb|AY320037.1| Oryza sativa (japonica cultivar-group) RNA binding protein Rp120
           gene, complete cds
          Length = 5478

 Score =  111 bits (56), Expect = 1e-21
 Identities = 74/80 (92%)
 Strand = Plus / Plus

                                                                       
Query: 158 ggagcttcaggatggctaaggggcaaggtgaaggctgtgacttctggggactgccttctc 217
           ||||| || |||||||| ||||| |||||||||| |||||||||||||||||| ||||||
Sbjct: 45  ggagcgtctggatggctgaggggtaaggtgaagggtgtgacttctggggactgtcttctc 104

                               
Query: 218 atcatggggagcaccaaggc 237
           ||||||||||||||||||||
Sbjct: 105 atcatggggagcaccaaggc 124
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>gb|AY320036.1| Oryza sativa (japonica cultivar-group) RNA binding protein Rp120
           mRNA, complete cds
          Length = 2961

 Score =  111 bits (56), Expect = 1e-21
 Identities = 74/80 (92%)
 Strand = Plus / Plus

                                                                       
Query: 158 ggagcttcaggatggctaaggggcaaggtgaaggctgtgacttctggggactgccttctc 217
           ||||| || |||||||| ||||| |||||||||| |||||||||||||||||| ||||||
Sbjct: 16  ggagcgtctggatggctgaggggtaaggtgaagggtgtgacttctggggactgtcttctc 75

                               
Query: 218 atcatggggagcaccaaggc 237
           ||||||||||||||||||||
Sbjct: 76  atcatggggagcaccaaggc 95
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  111 bits (56), Expect = 1e-21
 Identities = 74/80 (92%)
 Strand = Plus / Minus

                                                                            
Query: 158      ggagcttcaggatggctaaggggcaaggtgaaggctgtgacttctggggactgccttctc 217
                ||||| || |||||||| ||||| |||||||||| |||||||||||||||||| ||||||
Sbjct: 19123886 ggagcgtctggatggctgaggggtaaggtgaagggtgtgacttctggggactgtcttctc 19123827

                                    
Query: 218      atcatggggagcaccaaggc 237
                ||||||||||||||||||||
Sbjct: 19123826 atcatggggagcaccaaggc 19123807
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>dbj|AP004772.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0415B12
          Length = 157419

 Score =  111 bits (56), Expect = 1e-21
 Identities = 74/80 (92%)
 Strand = Plus / Minus

                                                                         
Query: 158   ggagcttcaggatggctaaggggcaaggtgaaggctgtgacttctggggactgccttctc 217
             ||||| || |||||||| ||||| |||||||||| |||||||||||||||||| ||||||
Sbjct: 22135 ggagcgtctggatggctgaggggtaaggtgaagggtgtgacttctggggactgtcttctc 22076

                                 
Query: 218   atcatggggagcaccaaggc 237
             ||||||||||||||||||||
Sbjct: 22075 atcatggggagcaccaaggc 22056
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>dbj|AP005749.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0047A17
          Length = 149142

 Score =  111 bits (56), Expect = 1e-21
 Identities = 74/80 (92%)
 Strand = Plus / Minus

                                                                          
Query: 158    ggagcttcaggatggctaaggggcaaggtgaaggctgtgacttctggggactgccttctc 217
              ||||| || |||||||| ||||| |||||||||| |||||||||||||||||| ||||||
Sbjct: 129407 ggagcgtctggatggctgaggggtaaggtgaagggtgtgacttctggggactgtcttctc 129348

                                  
Query: 218    atcatggggagcaccaaggc 237
              ||||||||||||||||||||
Sbjct: 129347 atcatggggagcaccaaggc 129328
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>dbj|AK065061.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001J15, full
           insert sequence
          Length = 3547

 Score =  111 bits (56), Expect = 1e-21
 Identities = 74/80 (92%)
 Strand = Plus / Plus

                                                                       
Query: 158 ggagcttcaggatggctaaggggcaaggtgaaggctgtgacttctggggactgccttctc 217
           ||||| || |||||||| ||||| |||||||||| |||||||||||||||||| ||||||
Sbjct: 237 ggagcgtctggatggctgaggggtaaggtgaagggtgtgacttctggggactgtcttctc 296

                               
Query: 218 atcatggggagcaccaaggc 237
           ||||||||||||||||||||
Sbjct: 297 atcatggggagcaccaaggc 316
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>dbj|AB078603.1| Pisum sativum SN4TDR mRNA for 110 kDa 4SNc-Tudor domain protein,
           complete cds
          Length = 3379

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 182 aaggtgaaggctgtgacttctggggactgc 211
           |||||||||||||| |||||||||||||||
Sbjct: 237 aaggtgaaggctgttacttctggggactgc 266
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>dbj|AB078602.1| Pisum sativum mRNA for 110kDa protein HMP, partial cds
          Length = 1339

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 182 aaggtgaaggctgtgacttctggggactgc 211
           |||||||||||||| |||||||||||||||
Sbjct: 237 aaggtgaaggctgttacttctggggactgc 266
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>gb|AF440781.1| Streptomyces cinnamonensis polyether antibiotic monensin biosynthesis
             gene cluster, partial sequence
          Length = 103450

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 101   aggcggaggccgctcgccgccg 122
             ||||||||||||||||||||||
Sbjct: 60057 aggcggaggccgctcgccgccg 60036
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>gb|DQ118863.1| Streptomyces fradiae strain NRRL18158 lipopeptide antibiotic A54145
             biosynthetic gene cluster, complete sequence
          Length = 126933

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 102   ggcggaggccgctcgccgcc 121
             ||||||||||||||||||||
Sbjct: 32744 ggcggaggccgctcgccgcc 32763


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,062,213
Number of Sequences: 3902068
Number of extensions: 2062213
Number of successful extensions: 43476
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43433
Number of HSP's gapped (non-prelim): 43
length of query: 239
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 217
effective length of database: 17,147,199,772
effective search space: 3720942350524
effective search space used: 3720942350524
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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