ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl21e10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_510018.1| PREDICTED: Pan troglodytes similar to KIAA1200 ... 36 8.6
2ref|NM_020715.1| Homo sapiens pleckstrin homology domain contain... 36 8.6
3ref|XM_814719.1| Trypanosoma cruzi strain CL Brener hypothetical... 36 8.6
4emb|X61207.1|ABHISHAFE A.brasilense hisB, H, A, F and E genes fo... 36 8.6
5dbj|AK123305.1| Homo sapiens cDNA FLJ41311 fis, clone BRAMY2042760 36 8.6
6gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 36 8.6
7emb|BX648464.1|HSM808612 Homo sapiens mRNA; cDNA DKFZp686C0111 (... 36 8.6
8emb|AL132640.4|CNS01DT5 Human chromosome 14 DNA sequence BAC R-6... 36 8.6
9dbj|AB033026.1| Homo sapiens mRNA for KIAA1200 protein, partial cds 36 8.6

>ref|XM_510018.1| PREDICTED: Pan troglodytes similar to KIAA1200 protein (LOC452983),
            mRNA
          Length = 5055

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 37   gcagtcatcgtcagaccc 54
            ||||||||||||||||||
Sbjct: 2499 gcagtcatcgtcagaccc 2482



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>ref|NM_020715.1| Homo sapiens pleckstrin homology domain containing, family H (with
            MyTH4 domain) member 1 (PLEKHH1), mRNA
          Length = 6512

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 37   gcagtcatcgtcagaccc 54
            ||||||||||||||||||
Sbjct: 1615 gcagtcatcgtcagaccc 1598



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>ref|XM_814719.1| Trypanosoma cruzi strain CL Brener hypothetical protein
            (Tc00.1047053508799.250) partial mRNA
          Length = 2229

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 24/26 (92%)
 Strand = Plus / Minus

                                      
Query: 21   tggccgacgcaccggagcagtcatcg 46
            |||||| ||||||||||| |||||||
Sbjct: 2182 tggccgtcgcaccggagctgtcatcg 2157



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>emb|X61207.1|ABHISHAFE A.brasilense hisB, H, A, F and E genes for imidazole
            glycerolphosphate dehydratase, glutamine
            amidotransferase,
            phosphorybosilformimino-5-amino-phosphorybosil-4-
            imidazolecarboxamide isomerase, cyclase and
            phosphorybosil-AMP-cyclohydrolase
          Length = 4746

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 40   gtcatcgtcagacccgcc 57
            ||||||||||||||||||
Sbjct: 1665 gtcatcgtcagacccgcc 1648



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>dbj|AK123305.1| Homo sapiens cDNA FLJ41311 fis, clone BRAMY2042760
          Length = 2146

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 37   gcagtcatcgtcagaccc 54
            ||||||||||||||||||
Sbjct: 1347 gcagtcatcgtcagaccc 1330



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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 25/26 (96%), Gaps = 1/26 (3%)
 Strand = Plus / Plus

                                         
Query: 6       gacctcggtttccga-tggccgacgc 30
               ||||||||||||||| ||||||||||
Sbjct: 3393811 gacctcggtttccgactggccgacgc 3393836



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>emb|BX648464.1|HSM808612 Homo sapiens mRNA; cDNA DKFZp686C0111 (from clone DKFZp686C0111)
          Length = 5611

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 37  gcagtcatcgtcagaccc 54
           ||||||||||||||||||
Sbjct: 751 gcagtcatcgtcagaccc 734



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>emb|AL132640.4|CNS01DT5 Human chromosome 14 DNA sequence BAC R-643G16 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 177688

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 37    gcagtcatcgtcagaccc 54
             ||||||||||||||||||
Sbjct: 71494 gcagtcatcgtcagaccc 71511



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>dbj|AB033026.1| Homo sapiens mRNA for KIAA1200 protein, partial cds
          Length = 6512

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 37   gcagtcatcgtcagaccc 54
            ||||||||||||||||||
Sbjct: 1615 gcagtcatcgtcagaccc 1598


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 170,613
Number of Sequences: 3902068
Number of extensions: 170613
Number of successful extensions: 9085
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 9054
Number of HSP's gapped (non-prelim): 33
length of query: 60
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 39
effective length of database: 17,151,101,840
effective search space: 668892971760
effective search space used: 668892971760
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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