ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bastl21e09 |
|---|---|
| Clone Library Name | barley_pub |
>SYT8_HUMAN (Q8NBV8) Synaptotagmin-8 (Synaptotagmin VIII) (SytVIII)| Length = 172 Score = 30.0 bits (66), Expect = 2.5 Identities = 16/39 (41%), Positives = 20/39 (51%) Frame = +1 Query: 196 PPASPLTHDPAASPGGVAGKVP*SSGDLGSETPWQRWIL 312 PP SP PA + + G +P DL + TPW RW L Sbjct: 18 PPVSPSAPAPAGTTA-IPGLIP----DLVAGTPWPRWAL 51
>SFR16_MOUSE (Q8CFC7) Splicing factor, arginine/serine-rich 16 (Suppressor of| white-apricot homolog 2) (Clk4-associating SR-related protein) Length = 653 Score = 29.6 bits (65), Expect = 3.3 Identities = 22/56 (39%), Positives = 29/56 (51%) Frame = +1 Query: 193 SPPASPLTHDPAASPGGVAGKVP*SSGDLGSETPWQRWILSRPAKTPSARLEMRLQ 360 SPP LT PAASP V K+ + G ET ++P TP RL++R+Q Sbjct: 514 SPPREKLTR-PAASPA-VGEKLKKTEPAAGKETG-----AAKPKLTPQERLKLRMQ 562
>CU093_HUMAN (P59091) Protein C21orf93| Length = 139 Score = 28.9 bits (63), Expect = 5.7 Identities = 17/34 (50%), Positives = 19/34 (55%) Frame = +1 Query: 199 PASPLTHDPAASPGGVAGKVP*SSGDLGSETPWQ 300 PA H PAA+ GGV +V SS L E PWQ Sbjct: 18 PADAQLHGPAAAGGGVGPRVMLSS--LCREHPWQ 49
>Y2902_LISIN (Q926Y8) UPF0189 protein lin2902| Length = 176 Score = 28.5 bits (62), Expect = 7.4 Identities = 17/38 (44%), Positives = 21/38 (55%) Frame = +3 Query: 297 AAVDLIASCQDSIRQIGDEIADALVYLDAGTLEAFHFI 410 A DL+ CQ+ I +IG A V AG L+A HFI Sbjct: 40 AGPDLLKECQEVINRIGSCPAGEAVITSAGDLKA-HFI 76
>Y2759_LISMO (Q8Y3S3) UPF0189 protein lmo2759| Length = 176 Score = 28.5 bits (62), Expect = 7.4 Identities = 16/40 (40%), Positives = 21/40 (52%) Frame = +3 Query: 297 AAVDLIASCQDSIRQIGDEIADALVYLDAGTLEAFHFIGA 416 A DL+ CQ+ I +IG A V AG L+A + I A Sbjct: 40 AGPDLLKECQEVINRIGSCPAGEAVITSAGDLKATYIIHA 79
>Y2748_LISMF (Q71W03) UPF0189 protein LMOf2365_2748| Length = 176 Score = 28.5 bits (62), Expect = 7.4 Identities = 16/40 (40%), Positives = 21/40 (52%) Frame = +3 Query: 297 AAVDLIASCQDSIRQIGDEIADALVYLDAGTLEAFHFIGA 416 A DL+ CQ+ I +IG A V AG L+A + I A Sbjct: 40 AGPDLLKECQEVINRIGTCPAGEAVITSAGDLQASYIIHA 79
>ATI2_VZVD (P09264) Alpha trans-inducing factor 74 kDa protein| Length = 661 Score = 28.5 bits (62), Expect = 7.4 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 5/30 (16%) Frame = -3 Query: 370 TSASAIS-----SPIWRMESWQDAIRSTAA 296 T+ASA++ S +WR E W+D + TAA Sbjct: 310 TTASALTALLRISVLWRKEEWRDGLNGTAA 339
>FETUB_RAT (Q9QX79) Fetuin-B precursor (IRL685)| Length = 378 Score = 28.5 bits (62), Expect = 7.4 Identities = 13/23 (56%), Positives = 15/23 (65%) Frame = +1 Query: 163 CSLAAVTVVSSPPASPLTHDPAA 231 C+LAA V SPPA PL + P A Sbjct: 10 CTLAACCVARSPPAPPLPNAPFA 32
>NUB1_HUMAN (Q9Y5A7) NEDD8 ultimate buster 1 (NY-REN-18 antigen)| Length = 615 Score = 28.5 bits (62), Expect = 7.4 Identities = 13/22 (59%), Positives = 16/22 (72%) Frame = -2 Query: 284 LPRSPEDYGTFPATPPGDAAGS 219 LP SPED + PAT P D+AG+ Sbjct: 537 LPLSPEDSLSPPATSPSDSAGT 558
>LAML2_XENLA (P21910) Lamin-L(II)| Length = 623 Score = 28.5 bits (62), Expect = 7.4 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 6/60 (10%) Frame = -3 Query: 394 SRVPASRYTSASAISSPIWRM------ESWQDAIRSTAAMASHSLGPQKITEPSPRRRLV 233 SRV SR TS+S+ ++ R E +++ ST A HSLG +IT R + Sbjct: 399 SRVTVSRATSSSSSATRTSRSKRRRVEEEYEEGGASTGFGAGHSLGSSRITASEGSSRTI 458
>MAGI1_MOUSE (Q6RHR9) Membrane-associated guanylate kinase, WW and PDZ| domain-containing protein 1 (BAI1-associated protein 1) (BAP-1) (Membrane-associated guanylate kinase inverted 1) (MAGI-1) Length = 1471 Score = 28.1 bits (61), Expect = 9.7 Identities = 27/100 (27%), Positives = 38/100 (38%) Frame = -3 Query: 430 RSRGNAPIKWNASRVPASRYTSASAISSPIWRMESWQDAIRSTAAMASHSLGPQKITEPS 251 R + P W ++ P T+ S SP R E + A + H +K E S Sbjct: 1305 RPKDRPPDAWREAQ-PERTATNGSKRRSPEKRREGTRSADNTLERREKH----EKRREIS 1359 Query: 250 PRRRLVMRPDRG*GAKPEGS*RR*PRLENTETSPLPPKGG 131 P R+ P R + P R RL + SP +GG Sbjct: 1360 PERKRERSPTRRKDSSPSRRRRSLERLLDQRRSPERRRGG 1399
>SCFD2_MOUSE (Q8BTY8) Sec1 family domain-containing protein 2 (Syntaxin-binding| protein 1-like 1) (Neuronal Sec1) Length = 684 Score = 28.1 bits (61), Expect = 9.7 Identities = 15/47 (31%), Positives = 25/47 (53%) Frame = +3 Query: 294 MAAVDLIASCQDSIRQIGDEIADALVYLDAGTLEAFHFIGAFPLLLE 434 M+A ++A Q Q+ ++ ++VYLDA E+ H+ LLE Sbjct: 1 MSAAGILAFAQQGWEQVLAKVKWSVVYLDAACAESLHWSCGSSRLLE 47
>BRAF1_HUMAN (P15056) B-Raf proto-oncogene serine/threonine-protein kinase (EC| 2.7.11.1) (p94) (v-Raf murine sarcoma viral oncogene homolog B1) Length = 766 Score = 28.1 bits (61), Expect = 9.7 Identities = 12/24 (50%), Positives = 17/24 (70%) Frame = -3 Query: 307 STAAMASHSLGPQKITEPSPRRRL 236 S +A AS S+GPQ +T PSP + + Sbjct: 317 SPSAPASDSIGPQILTSPSPSKSI 340
>NRG3_HUMAN (P56975) Pro-neuregulin-3, membrane-bound isoform precursor| (Pro-NRG3) [Contains: Neuregulin-3 (NRG-3)] Length = 720 Score = 28.1 bits (61), Expect = 9.7 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 2/49 (4%) Frame = -3 Query: 385 PASRYTSASAI--SSPIWRMESWQDAIRSTAAMASHSLGPQKITEPSPR 245 P + Y ++S + S+P W + +QDA S+++ +S + T SP+ Sbjct: 225 PTAAYATSSYLHDSTPSWTLSPFQDAASSSSSSSSSATTTTPETSTSPK 273 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,803,878 Number of Sequences: 219361 Number of extensions: 1102632 Number of successful extensions: 3890 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 3635 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3889 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2511994855 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
