ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl21e08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 1.7
2gb|AC129008.1| Genomic sequence for Oryza sativa, Nipponbare str... 40 1.7
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 1.7
4gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 38 6.5
5ref|XM_657262.1| Aspergillus nidulans FGSC A4 hypothetical prote... 38 6.5
6ref|XM_656450.1| Aspergillus nidulans FGSC A4 hypothetical prote... 38 6.5
7gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 38 6.5
8emb|AJ251874.1|ANI251874 Aspergillus niger mndA gene for beta-ma... 38 6.5
9dbj|AP002517.3| Homo sapiens genomic DNA, chromosome 11q clone:R... 38 6.5
10dbj|AP002512.4| Homo sapiens genomic DNA, chromosome 11q clone:C... 38 6.5

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 107     accaccttcacaaatcacaa 126
               ||||||||||||||||||||
Sbjct: 7599433 accaccttcacaaatcacaa 7599414



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>gb|AC129008.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBb0096L14, from chromosome 3, complete sequence
          Length = 131142

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 107    accaccttcacaaatcacaa 126
              ||||||||||||||||||||
Sbjct: 115857 accaccttcacaaatcacaa 115876



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 107     accaccttcacaaatcacaa 126
               ||||||||||||||||||||
Sbjct: 7597268 accaccttcacaaatcacaa 7597249



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>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 28      cgacgtcgagctcacgcgc 46
               |||||||||||||||||||
Sbjct: 3020145 cgacgtcgagctcacgcgc 3020163



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>ref|XM_657262.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN4750.2), mRNA
          Length = 831

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 9   catcgaaagaggaagcaga 27
           |||||||||||||||||||
Sbjct: 506 catcgaaagaggaagcaga 524



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>ref|XM_656450.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN3938.2), mRNA
          Length = 7872

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 54   agccaaccttgtcggaatc 72
            |||||||||||||||||||
Sbjct: 7023 agccaaccttgtcggaatc 7041



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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 28      cgacgtcgagctcacgcgc 46
               |||||||||||||||||||
Sbjct: 1566804 cgacgtcgagctcacgcgc 1566822



 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 26      gacgacgtcgagctcacgc 44
               |||||||||||||||||||
Sbjct: 1062011 gacgacgtcgagctcacgc 1061993



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>emb|AJ251874.1|ANI251874 Aspergillus niger mndA gene for beta-mannosidase, exons 1-3
          Length = 3066

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 46  cagaccagagccaaccttg 64
           |||||||||||||||||||
Sbjct: 933 cagaccagagccaaccttg 951



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>dbj|AP002517.3| Homo sapiens genomic DNA, chromosome 11q clone:RP11-116P9, complete
             sequences
          Length = 173251

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 109   caccttcacaaatcacaag 127
             |||||||||||||||||||
Sbjct: 38227 caccttcacaaatcacaag 38209



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>dbj|AP002512.4| Homo sapiens genomic DNA, chromosome 11q clone:CTD-3051L14, complete
              sequences
          Length = 175031

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 109    caccttcacaaatcacaag 127
              |||||||||||||||||||
Sbjct: 150752 caccttcacaaatcacaag 150734


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 903,297
Number of Sequences: 3902068
Number of extensions: 903297
Number of successful extensions: 66442
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66280
Number of HSP's gapped (non-prelim): 162
length of query: 138
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 117
effective length of database: 17,151,101,840
effective search space: 2006678915280
effective search space used: 2006678915280
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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