ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl21e05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1UBE12_WHEAT (P31251) Ubiquitin-activating enzyme E1 2 56 2e-08
2UBE11_WHEAT (P20973) Ubiquitin-activating enzyme E1 1 56 2e-08
3SURE_HALSA (Q9HQB2) 5'-nucleotidase surE (EC 3.1.3.5) (Nucleosid... 28 7.9

>UBE12_WHEAT (P31251) Ubiquitin-activating enzyme E1 2|
          Length = 1051

 Score = 56.2 bits (134), Expect = 2e-08
 Identities = 27/29 (93%), Positives = 27/29 (93%)
 Frame = +3

Query: 198 MLPRKREIVAGEVEDLQKKTRAGEGETAR 284
           MLPRKREIVAGEVEDLQKKTRAGEGE  R
Sbjct: 1   MLPRKREIVAGEVEDLQKKTRAGEGEATR 29



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>UBE11_WHEAT (P20973) Ubiquitin-activating enzyme E1 1|
          Length = 1051

 Score = 56.2 bits (134), Expect = 2e-08
 Identities = 27/29 (93%), Positives = 27/29 (93%)
 Frame = +3

Query: 198 MLPRKREIVAGEVEDLQKKTRAGEGETAR 284
           MLPRKREIVAGEVEDLQKKTRAGEGE  R
Sbjct: 1   MLPRKREIVAGEVEDLQKKTRAGEGEVTR 29



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>SURE_HALSA (Q9HQB2) 5'-nucleotidase surE (EC 3.1.3.5) (Nucleoside|
           5'-monophosphate phosphohydrolase)
          Length = 258

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +3

Query: 39  SPASFPDATGESKVSRRSHALDLT 110
           +P    DATGE  V+R SHA D+T
Sbjct: 172 APHPDADATGEMVVTRPSHAYDMT 195


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,026,458
Number of Sequences: 219361
Number of extensions: 481659
Number of successful extensions: 1721
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1721
length of database: 80,573,946
effective HSP length: 70
effective length of database: 65,218,676
effective search space used: 1565248224
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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