ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl21e05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|M55604.1|WHTUBA1 T.aestivum ubiquitin activating enzyme E1 (U... 387 e-104
2gb|M90663.1|WHTE1A Wheat ubiquitin activating enzyme (E1) mRNA, ... 293 2e-76
3dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 64 3e-07
4gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 64 3e-07
5emb|BX000501.4|CNS08CDR Oryza sativa chromosome 11, . BAC OSJNBa... 64 3e-07
6emb|BX000497.1|CNS08CDN Oryza sativa chromosome 11, . BAC OSJNBa... 64 3e-07
7dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
8dbj|AK111781.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.001
9gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 52 0.001
10emb|BX000494.2|CNS08CDK Oryza sativa chromosome 12, . BAC OSJNBa... 52 0.001
11gb|AY597048.1| Oncorhynchus mykiss macrophage myristoylated alan... 44 0.24
12emb|AJ278573.1|SNA278573 Streptomyces natalensis pimaricin biosy... 44 0.24
13dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 44 0.24
14gb|AC146334.2| Oryza sativa (japonica cultivar-group) chromosome... 42 0.94
15gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 42 0.94
16gb|AF202898.1|AF202898 Streptomyces coelicolor A3(2) type I poly... 42 0.94
17dbj|AK058631.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.94
18gb|DQ333391.1| Cervid herpesvirus 2 glycoprotein C gene, complet... 42 0.94
19ref|XM_475618.1| Oryza sativa (japonica cultivar-group), predic... 40 3.7
20ref|XM_468450.1| Oryza sativa (japonica cultivar-group), mRNA 40 3.7
21ref|XM_507059.1| PREDICTED Oryza sativa (japonica cultivar-group... 40 3.7
22ref|XM_468451.1| Oryza sativa (japonica cultivar-group), mRNA 40 3.7
23gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 40 3.7
24gb|AY657515.1| Synthetic construct Peudomonas aeruginosa clone F... 40 3.7
25gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 40 3.7
26ref|XM_749626.1| Aspergillus fumigatus Af293 AP-1 adaptor comple... 40 3.7
27gb|DQ352994.1| Apomyrma stygia voucher RA0120 abdominal-A (AbdA)... 40 3.7
28gb|DQ352869.1| Pachycondyla stigma voucher RA0243 abdominal-A (A... 40 3.7
29emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 40 3.7
30gb|AC093502.2| Drosophila melanogaster 3L BAC RP98-48C4 (Roswell... 40 3.7
31gb|AC010031.8| Drosophila melanogaster 3L BAC RP98-2M20 (Roswell... 40 3.7
32gb|AC104703.3| Drosophila melanogaster 3L BAC RP98-35M1 (Roswell... 40 3.7
33ref|NM_176328.1| Drosophila melanogaster CG17364-RB, transcript ... 40 3.7
34ref|NM_140417.2| Drosophila melanogaster CG17364-RA, transcript ... 40 3.7
35gb|AY094951.1| Drosophila melanogaster RH68811 full insert cDNA 40 3.7
36gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, comple... 40 3.7
37dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.7
38dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.7
39gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome 40 3.7
40dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 3.7
41gb|AE004563.1| Pseudomonas aeruginosa PAO1, section 124 of 529 o... 40 3.7
42gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 3.7
43dbj|AP004020.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.7
44dbj|AP004878.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.7
45dbj|AK101218.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.7
46dbj|AK071390.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.7
47dbj|AK062205.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.7
48dbj|AK060561.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.7
49gb|AE003536.4| Drosophila melanogaster chromosome 3L, section 49... 40 3.7
50gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 40 3.7
51gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 3.7
52gb|AC087425.2| Oryza sativa (japonica cultivar-group) chromosome... 40 3.7
53dbj|D45381.1| Carassius auratus mRNA for AMPA-type glutamate rec... 40 3.7
54gb|U12018.1|CAU12018 Carassius auratus glutamate receptor 4 (glu... 40 3.7 
>gb|M55604.1|WHTUBA1 T.aestivum ubiquitin activating enzyme E1 (UBA1) gene, complete cds
          Length = 3586

 Score =  387 bits (195), Expect = e-104
 Identities = 239/255 (93%), Gaps = 9/255 (3%)
 Strand = Plus / Plus

                                                                       
Query: 30  gaccgtccctcgcctgcttccttccccgacgcgacaggcgaatccaaggtttcgcggcgg 89
           ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 6   gaccgtcgctcgcctgcttccttcaccgacgcgacaggcgaatccaaggtttcgcggcgg 65

                                                                       
Query: 90  ---------tcgcacgcgctggatctgacgcggcagctcccggcggccgtttactactgc 140
                    | ||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 66  ttgcggccctagcacgcgctggatctgacgcggcagctcccggcggccgcgtactactgc 125

                                                                       
Query: 141 ctgctcttcgctgcgtcggcggccgtcctcgggctcctcggcggcgtcgcgcgctatatg 200
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 126 ctgctcttcgctgcgtcggcggctgtcctcgggctcctcggcggcgtcgcgcgctatatg 185

                                                                       
Query: 201 cttccccggaagcgggagatcgtcgccggcgaggtcgaggacttgcagaagaaaacccgc 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 186 cttccccggaagcgggagatcgtcgccggcgaggtcgaggacttgcagaagaagacccgc 245

                          
Query: 261 gccggggagggggag 275
           |||||||||||||||
Sbjct: 246 gccggggagggggag 260
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>gb|M90663.1|WHTE1A Wheat ubiquitin activating enzyme (E1) mRNA, complete cds
          Length = 3695

 Score =  293 bits (148), Expect = 2e-76
 Identities = 174/180 (96%), Gaps = 2/180 (1%)
 Strand = Plus / Plus

                                                                       
Query: 92  gcacgcgctggatctgacgcggcagctcccggcggccgtttactactgcctgctcttcgc 151
           ||||||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||
Sbjct: 174 gcacgcgctggatctgacgcg-cagctcccggcggccgcgtactactgcctgctcttcgc 232

                                                                       
Query: 152 tgcgtcggcggccgtcctcgggctcctcggcggcgtcgcgcgctatatgcttccccggaa 211
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 233 tgcgtcggcggccgtcctcgggctcctcggcg-cgtcgcgcgctatatgcttccccggaa 291

                                                                       
Query: 212 gcgggagatcgtcgccggcgaggtcgaggacttgcagaagaaaacccgcgccggggaggg 271
           |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 292 gcgggagatcgtcgccggcgaggtcgaggacttgcagaagaagacccgtgccggggaggg 351



 Score = 79.8 bits (40), Expect = 4e-12
 Identities = 66/73 (90%), Gaps = 5/73 (6%)
 Strand = Plus / Plus

                                                                      
Query: 8  cccatcccagaaaccctagacggaccgtccctcgcctgctt-ccttccccgacgcgacag 66
          |||| ||||||||||||||||    |||| ||||||||||| ||||||||||||||||||
Sbjct: 8  cccagcccagaaaccctagac----cgtcgctcgcctgctttccttccccgacgcgacag 63

                       
Query: 67 gcgaatccaaggt 79
          |||||||||||||
Sbjct: 64 gcgaatccaaggt 76
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11,
              complete sequence
          Length = 28386948

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 80/96 (83%)
 Strand = Plus / Minus

                                                                          
Query: 169    tcgggctcctcggcggcgtcgcgcgctatatgcttccccggaagcgggagatcgtcgccg 228
              |||| ||||||||||||| |   | |||||||||| |||| |||||||||    ||||||
Sbjct: 300318 tcggcctcctcggcggcgccctacactatatgcttacccgcaagcgggaggagctcgccg 300259

                                                  
Query: 229    gcgaggtcgaggacttgcagaagaaaacccgcgccg 264
              |||||||| | |||||||| ||||| ||||||||||
Sbjct: 300258 gcgaggtccacgacttgcacaagaagacccgcgccg 300223



 Score = 42.1 bits (21), Expect = 0.94
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 260      cgccggggagggggagacggc 280
                |||||||||||||||||||||
Sbjct: 21637789 cgccggggagggggagacggc 21637809



 Score = 42.1 bits (21), Expect = 0.94
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 99     ctggatctgacgcggcagctc 119
              |||||||||||||||||||||
Sbjct: 300382 ctggatctgacgcggcagctc 300362
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 80/96 (83%)
 Strand = Plus / Minus

                                                                          
Query: 169    tcgggctcctcggcggcgtcgcgcgctatatgcttccccggaagcgggagatcgtcgccg 228
              |||| ||||||||||||| |   | |||||||||| |||| |||||||||    ||||||
Sbjct: 300318 tcggcctcctcggcggcgccctacactatatgcttacccgcaagcgggaggagctcgccg 300259

                                                  
Query: 229    gcgaggtcgaggacttgcagaagaaaacccgcgccg 264
              |||||||| | |||||||| ||||| ||||||||||
Sbjct: 300258 gcgaggtccacgacttgcacaagaagacccgcgccg 300223



 Score = 42.1 bits (21), Expect = 0.94
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 260      cgccggggagggggagacggc 280
                |||||||||||||||||||||
Sbjct: 21947988 cgccggggagggggagacggc 21948008



 Score = 42.1 bits (21), Expect = 0.94
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 99     ctggatctgacgcggcagctc 119
              |||||||||||||||||||||
Sbjct: 300382 ctggatctgacgcggcagctc 300362
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>emb|BX000501.4|CNS08CDR Oryza sativa chromosome 11, . BAC OSJNBa0032J07 of library OSJNBa
            from chromosome 11 of cultivar Nipponbare of ssp.
            japonica of Oryza sativa (rice), complete sequence
          Length = 160673

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 80/96 (83%)
 Strand = Plus / Plus

                                                                        
Query: 169  tcgggctcctcggcggcgtcgcgcgctatatgcttccccggaagcgggagatcgtcgccg 228
            |||| ||||||||||||| |   | |||||||||| |||| |||||||||    ||||||
Sbjct: 4675 tcggcctcctcggcggcgccctacactatatgcttacccgcaagcgggaggagctcgccg 4734

                                                
Query: 229  gcgaggtcgaggacttgcagaagaaaacccgcgccg 264
            |||||||| | |||||||| ||||| ||||||||||
Sbjct: 4735 gcgaggtccacgacttgcacaagaagacccgcgccg 4770



 Score = 42.1 bits (21), Expect = 0.94
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 99   ctggatctgacgcggcagctc 119
            |||||||||||||||||||||
Sbjct: 4611 ctggatctgacgcggcagctc 4631
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>emb|BX000497.1|CNS08CDN Oryza sativa chromosome 11, . BAC OSJNBa0010K05 of library OSJNBa
            from chromosome 11 of cultivar Nipponbare of ssp.
            japonica of Oryza sativa (rice), complete sequence
          Length = 164143

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 80/96 (83%)
 Strand = Plus / Minus

                                                                        
Query: 169  tcgggctcctcggcggcgtcgcgcgctatatgcttccccggaagcgggagatcgtcgccg 228
            |||| ||||||||||||| |   | |||||||||| |||| |||||||||    ||||||
Sbjct: 7636 tcggcctcctcggcggcgccctacactatatgcttacccgcaagcgggaggagctcgccg 7577

                                                
Query: 229  gcgaggtcgaggacttgcagaagaaaacccgcgccg 264
            |||||||| | |||||||| ||||| ||||||||||
Sbjct: 7576 gcgaggtccacgacttgcacaagaagacccgcgccg 7541



 Score = 42.1 bits (21), Expect = 0.94
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 99   ctggatctgacgcggcagctc 119
            |||||||||||||||||||||
Sbjct: 7700 ctggatctgacgcggcagctc 7680
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12,
              complete sequence
          Length = 27566993

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 84/100 (84%), Gaps = 5/100 (5%)
 Strand = Plus / Minus

                                                                          
Query: 169    tcgggctcctcggcggcgtcgcgcgctatatgcttccccggaagcgggag-atcgtcgcc 227
              |||| ||||||||||||| |   | |||||||||| |||| ||||||||| ||| |||||
Sbjct: 317286 tcggcctcctcggcggcgccctacactatatgcttacccgcaagcgggaggatc-tcgcc 317228

                                                      
Query: 228    ggcgaggtcg---aggacttgcagaagaaaacccgcgccg 264
              ||||||||||   | |||||||| ||||| ||||||||||
Sbjct: 317227 ggcgaggtcgtccacgacttgcacaagaagacccgcgccg 317188



 Score = 42.1 bits (21), Expect = 0.94
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 99     ctggatctgacgcggcagctc 119
              |||||||||||||||||||||
Sbjct: 317350 ctggatctgacgcggcagctc 317330
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>dbj|AK111781.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023083B12, full
           insert sequence
          Length = 3724

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 84/100 (84%), Gaps = 5/100 (5%)
 Strand = Plus / Plus

                                                                       
Query: 169 tcgggctcctcggcggcgtcgcgcgctatatgcttccccggaagcgggag-atcgtcgcc 227
           |||| ||||||||||||| |   | |||||||||| |||| ||||||||| ||| |||||
Sbjct: 289 tcggcctcctcggcggcgccctacactatatgcttacccgcaagcgggaggatc-tcgcc 347

                                                   
Query: 228 ggcgaggtcg---aggacttgcagaagaaaacccgcgccg 264
           ||||||||||   | |||||||| ||||| ||||||||||
Sbjct: 348 ggcgaggtcgtccacgacttgcacaagaagacccgcgccg 387



 Score = 42.1 bits (21), Expect = 0.94
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 99  ctggatctgacgcggcagctc 119
           |||||||||||||||||||||
Sbjct: 225 ctggatctgacgcggcagctc 245
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 84/100 (84%), Gaps = 5/100 (5%)
 Strand = Plus / Minus

                                                                          
Query: 169    tcgggctcctcggcggcgtcgcgcgctatatgcttccccggaagcgggag-atcgtcgcc 227
              |||| ||||||||||||| |   | |||||||||| |||| ||||||||| ||| |||||
Sbjct: 317286 tcggcctcctcggcggcgccctacactatatgcttacccgcaagcgggaggatc-tcgcc 317228

                                                      
Query: 228    ggcgaggtcg---aggacttgcagaagaaaacccgcgccg 264
              ||||||||||   | |||||||| ||||| ||||||||||
Sbjct: 317227 ggcgaggtcgtccacgacttgcacaagaagacccgcgccg 317188



 Score = 42.1 bits (21), Expect = 0.94
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 99     ctggatctgacgcggcagctc 119
              |||||||||||||||||||||
Sbjct: 317350 ctggatctgacgcggcagctc 317330
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>emb|BX000494.2|CNS08CDK Oryza sativa chromosome 12, . BAC OSJNBa0052H10 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 152222

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 84/100 (84%), Gaps = 5/100 (5%)
 Strand = Plus / Minus

                                                                         
Query: 169   tcgggctcctcggcggcgtcgcgcgctatatgcttccccggaagcgggag-atcgtcgcc 227
             |||| ||||||||||||| |   | |||||||||| |||| ||||||||| ||| |||||
Sbjct: 50337 tcggcctcctcggcggcgccctacactatatgcttacccgcaagcgggaggatc-tcgcc 50279

                                                     
Query: 228   ggcgaggtcg---aggacttgcagaagaaaacccgcgccg 264
             ||||||||||   | |||||||| ||||| ||||||||||
Sbjct: 50278 ggcgaggtcgtccacgacttgcacaagaagacccgcgccg 50239



 Score = 42.1 bits (21), Expect = 0.94
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 99    ctggatctgacgcggcagctc 119
             |||||||||||||||||||||
Sbjct: 50401 ctggatctgacgcggcagctc 50381
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>gb|AY597048.1| Oncorhynchus mykiss macrophage myristoylated alanine-rich C
           kinase-like protein mRNA, complete cds
          Length = 1307

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 167 cctcgggctcctcggcggcgtc 188
           ||||||||||||||||||||||
Sbjct: 389 cctcgggctcctcggcggcgtc 368
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>emb|AJ278573.1|SNA278573 Streptomyces natalensis pimaricin biosynthetic gene cluster
          Length = 84985

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 164  cgtcctcgggctcctcggcggc 185
            ||||||||||||||||||||||
Sbjct: 8332 cgtcctcgggctcctcggcggc 8353
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 163     ccgtcctcgggctcctcggcggcgtc 188
               |||||||||||| |||||||||||||
Sbjct: 4787528 ccgtcctcgggcgcctcggcggcgtc 4787503
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>gb|AC146334.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone B1356F10,
              complete sequence
          Length = 170681

 Score = 42.1 bits (21), Expect = 0.94
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 260    cgccggggagggggagacggc 280
              |||||||||||||||||||||
Sbjct: 161308 cgccggggagggggagacggc 161328
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 42.1 bits (21), Expect = 0.94
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 222     gtcgccggcgaggtcgaggac 242
               |||||||||||||||||||||
Sbjct: 4504569 gtcgccggcgaggtcgaggac 4504549



 Score = 42.1 bits (21), Expect = 0.94
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 215    ggagatcgtcgccggcgaggtcgag 239
              |||||||||||||| ||||||||||
Sbjct: 404648 ggagatcgtcgccgccgaggtcgag 404672
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>gb|AF202898.1|AF202898 Streptomyces coelicolor A3(2) type I polyketide synthase gene,
            partial cds
          Length = 2203

 Score = 42.1 bits (21), Expect = 0.94
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 162  gccgtcctcgggctcctcggc 182
            |||||||||||||||||||||
Sbjct: 1431 gccgtcctcgggctcctcggc 1411
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>dbj|AK058631.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-C10, full
           insert sequence
          Length = 1357

 Score = 42.1 bits (21), Expect = 0.94
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 260 cgccggggagggggagacggc 280
           |||||||||||||||||||||
Sbjct: 407 cgccggggagggggagacggc 427
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>gb|DQ333391.1| Cervid herpesvirus 2 glycoprotein C gene, complete cds
          Length = 1522

 Score = 42.1 bits (21), Expect = 0.94
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 170  cgggctcctcggcggcgtcgcgcgc 194
            |||||||||||||| ||||||||||
Sbjct: 1188 cgggctcctcggcgccgtcgcgcgc 1164
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>ref|XM_475618.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1335

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 219 atcgtcgccggcgaggtcga 238
           ||||||||||||||||||||
Sbjct: 48  atcgtcgccggcgaggtcga 67
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>ref|XM_468450.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 390

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 211 agcgggagatcgtcgccggcgagg 234
           |||||||| |||||||||||||||
Sbjct: 248 agcgggaggtcgtcgccggcgagg 225
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>ref|XM_507059.1| PREDICTED Oryza sativa (japonica cultivar-group), P0474F11.28-1
           mRNA
          Length = 2304

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 211 agcgggagatcgtcgccggcgagg 234
           |||||||| |||||||||||||||
Sbjct: 79  agcgggaggtcgtcgccggcgagg 102
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>ref|XM_468451.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2049

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 211 agcgggagatcgtcgccggcgagg 234
           |||||||| |||||||||||||||
Sbjct: 112 agcgggaggtcgtcgccggcgagg 135
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>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 74      caaggtttcgcggcggtcgc 93
               ||||||||||||||||||||
Sbjct: 1950645 caaggtttcgcggcggtcgc 1950626
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>gb|AY657515.1| Synthetic construct Peudomonas aeruginosa clone FLH040573.01F
           PA1340 gene, partial cds
          Length = 669

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 165 gtcctcgggctcctcggcggcgtcgcgc 192
           ||||||||  ||||||||||||||||||
Sbjct: 76  gtcctcggcgtcctcggcggcgtcgcgc 103
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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 74      caaggtttcgcggcggtcgc 93
               ||||||||||||||||||||
Sbjct: 1480472 caaggtttcgcggcggtcgc 1480491
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>ref|XM_749626.1| Aspergillus fumigatus Af293 AP-1 adaptor complex subunit beta
           (Afu3g08970) partial mRNA
          Length = 2241

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 241 acttgcagaagaaaacccgc 260
           ||||||||||||||||||||
Sbjct: 985 acttgcagaagaaaacccgc 966
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>gb|DQ352994.1| Apomyrma stygia voucher RA0120 abdominal-A (AbdA) gene, partial cds
          Length = 531

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 172 ggctcctcggcggcgtcgcgcgct 195
           |||||||||||||||||| |||||
Sbjct: 358 ggctcctcggcggcgtcgagcgct 381
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>gb|DQ352869.1| Pachycondyla stigma voucher RA0243 abdominal-A (AbdA) gene, partial
           cds
          Length = 648

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 172 ggctcctcggcggcgtcgcgcgct 195
           |||||||||||||||||| |||||
Sbjct: 361 ggctcctcggcggcgtcgagcgct 384
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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 74      caaggtttcgcggcggtcgc 93
               ||||||||||||||||||||
Sbjct: 1367581 caaggtttcgcggcggtcgc 1367600
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>gb|AC093502.2| Drosophila melanogaster 3L BAC RP98-48C4 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 166249

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 222   gtcgccggcgaggtcgagga 241
             ||||||||||||||||||||
Sbjct: 85552 gtcgccggcgaggtcgagga 85571
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>gb|AC010031.8| Drosophila melanogaster 3L BAC RP98-2M20 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 173509

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 222   gtcgccggcgaggtcgagga 241
             ||||||||||||||||||||
Sbjct: 17561 gtcgccggcgaggtcgagga 17580
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>gb|AC104703.3| Drosophila melanogaster 3L BAC RP98-35M1 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 185404

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 222    gtcgccggcgaggtcgagga 241
              ||||||||||||||||||||
Sbjct: 134007 gtcgccggcgaggtcgagga 134026
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>ref|NM_176328.1| Drosophila melanogaster CG17364-RB, transcript variant B (CG17364),
            mRNA
          Length = 2631

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 222  gtcgccggcgaggtcgagga 241
            ||||||||||||||||||||
Sbjct: 1338 gtcgccggcgaggtcgagga 1357
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>ref|NM_140417.2| Drosophila melanogaster CG17364-RA, transcript variant A (CG17364),
            mRNA
          Length = 2415

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 222  gtcgccggcgaggtcgagga 241
            ||||||||||||||||||||
Sbjct: 1338 gtcgccggcgaggtcgagga 1357
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>gb|AY094951.1| Drosophila melanogaster RH68811 full insert cDNA
          Length = 2014

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 222 gtcgccggcgaggtcgagga 241
           ||||||||||||||||||||
Sbjct: 708 gtcgccggcgaggtcgagga 727
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>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome
          Length = 3561584

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 162    gccgtcctcgggctcctcgg 181
              ||||||||||||||||||||
Sbjct: 474763 gccgtcctcgggctcctcgg 474744
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 219     atcgtcgccggcgaggtcga 238
               ||||||||||||||||||||
Sbjct: 3364388 atcgtcgccggcgaggtcga 3364407
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 211      agcgggagatcgtcgccggcgagg 234
                |||||||| |||||||||||||||
Sbjct: 35299137 agcgggaggtcgtcgccggcgagg 35299160
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>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome
          Length = 3304561

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 218     gatcgtcgccggcgaggtcg 237
               ||||||||||||||||||||
Sbjct: 1961521 gatcgtcgccggcgaggtcg 1961502
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 26    gacggaccgtccctcgcctg 45
             ||||||||||||||||||||
Sbjct: 86184 gacggaccgtccctcgcctg 86203
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>gb|AE004563.1| Pseudomonas aeruginosa PAO1, section 124 of 529 of the complete
            genome
          Length = 9937

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 165  gtcctcgggctcctcggcggcgtcgcgc 192
            ||||||||  ||||||||||||||||||
Sbjct: 7753 gtcctcggcgtcctcggcggcgtcgcgc 7726
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 111     cggcagctcccggcggccgt 130
               ||||||||||||||||||||
Sbjct: 2129561 cggcagctcccggcggccgt 2129542
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>dbj|AP004020.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1119_A01
          Length = 108727

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 211   agcgggagatcgtcgccggcgagg 234
             |||||||| |||||||||||||||
Sbjct: 49471 agcgggaggtcgtcgccggcgagg 49494
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>dbj|AP004878.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0474F11
          Length = 139544

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 211    agcgggagatcgtcgccggcgagg 234
              |||||||| |||||||||||||||
Sbjct: 111187 agcgggaggtcgtcgccggcgagg 111210
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>dbj|AK101218.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033031C13, full
           insert sequence
          Length = 1728

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 219 atcgtcgccggcgaggtcga 238
           ||||||||||||||||||||
Sbjct: 116 atcgtcgccggcgaggtcga 135
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>dbj|AK071390.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023093H07, full
           insert sequence
          Length = 2304

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 211 agcgggagatcgtcgccggcgagg 234
           |||||||| |||||||||||||||
Sbjct: 79  agcgggaggtcgtcgccggcgagg 102
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>dbj|AK062205.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-H02, full
           insert sequence
          Length = 2049

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 211 agcgggagatcgtcgccggcgagg 234
           |||||||| |||||||||||||||
Sbjct: 112 agcgggaggtcgtcgccggcgagg 135
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>dbj|AK060561.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-022-G04, full
           insert sequence
          Length = 1730

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 219 atcgtcgccggcgaggtcga 238
           ||||||||||||||||||||
Sbjct: 115 atcgtcgccggcgaggtcga 134
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>gb|AE003536.4| Drosophila melanogaster chromosome 3L, section 49 of 83 of the complete
              sequence
          Length = 350428

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 222    gtcgccggcgaggtcgagga 241
              ||||||||||||||||||||
Sbjct: 242559 gtcgccggcgaggtcgagga 242540
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>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 168     ctcgggctcctcggcggcgtcgcg 191
               |||||||| |||||||||||||||
Sbjct: 2637365 ctcgggctgctcggcggcgtcgcg 2637388
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 153     gcgtcggcggccgtcctcgggctc 176
               |||||||||||| |||||||||||
Sbjct: 1756399 gcgtcggcggccatcctcgggctc 1756422
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>gb|AC087425.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0676G05,
              complete sequence
          Length = 167317

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 219    atcgtcgccggcgaggtcga 238
              ||||||||||||||||||||
Sbjct: 158212 atcgtcgccggcgaggtcga 158231
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>dbj|D45381.1| Carassius auratus mRNA for AMPA-type glutamate receptor, partial cds
          Length = 2703

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 162  gccgtcctcgggctcctcgg 181
            ||||||||||||||||||||
Sbjct: 1731 gccgtcctcgggctcctcgg 1712
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>gb|U12018.1|CAU12018 Carassius auratus glutamate receptor 4 (glur4) mRNA, partial cds
          Length = 3613

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 162  gccgtcctcgggctcctcgg 181
            ||||||||||||||||||||
Sbjct: 1731 gccgtcctcgggctcctcgg 1712


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,941,243
Number of Sequences: 3902068
Number of extensions: 1941243
Number of successful extensions: 42800
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 41025
Number of HSP's gapped (non-prelim): 1762
length of query: 284
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 262
effective length of database: 17,147,199,772
effective search space: 4492566340264
effective search space used: 4492566340264
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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