ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl21e01 |
|---|---|
| Clone Library Name | barley_pub |
>IF2_SHEON (Q8EHL5) Translation initiation factor IF-2| Length = 885 Score = 28.5 bits (62), Expect = 4.0 Identities = 12/20 (60%), Positives = 14/20 (70%) Frame = -3 Query: 363 LEQDGVATLGDLVLCGLEVG 304 L Q+G GD+VLCGLE G Sbjct: 581 LVQEGTLRQGDIVLCGLEYG 600
>SFRS4_HUMAN (Q08170) Splicing factor, arginine/serine-rich 4 (Pre-mRNA-splicing| factor SRP75) (SRP001LB) Length = 494 Score = 28.5 bits (62), Expect = 4.0 Identities = 13/39 (33%), Positives = 23/39 (58%) Frame = -2 Query: 127 RSRPKNAQSTWMGREQEQVRGFGRSKKKENSTSLRKRNP 11 RSR K+ +S G +++ G + KKKE++ + R+P Sbjct: 369 RSRSKSERSRKRGSKRDSKAGSSKKKKKEDTDRSQSRSP 407
>IF2_COLP3 (Q482T9) Translation initiation factor IF-2| Length = 889 Score = 28.5 bits (62), Expect = 4.0 Identities = 12/20 (60%), Positives = 14/20 (70%) Frame = -3 Query: 363 LEQDGVATLGDLVLCGLEVG 304 L Q+G GD+VLCGLE G Sbjct: 585 LVQEGTLKQGDIVLCGLEYG 604
>YSC2_THETH (P25125) Hypothetical 38.4 kDa protein in scsB 5'region (ORFB)| Length = 343 Score = 28.5 bits (62), Expect = 4.0 Identities = 16/38 (42%), Positives = 20/38 (52%) Frame = -1 Query: 320 AALRWATKGLSRPEAIFSFLPFTTTTKSHLVRVGVSWN 207 AA R+ RPEAI F T +S L RV ++WN Sbjct: 105 AAERFLAWAKERPEAIQDFDQGYVTPESTLARVALAWN 142
>RDRP_PAV (Q9J7Z2) RNA-directed RNA polymerase (EC 2.7.7.48) (RdRp) (RNA| replicase) (Protein A) Length = 973 Score = 28.1 bits (61), Expect = 5.2 Identities = 20/61 (32%), Positives = 29/61 (47%) Frame = +1 Query: 214 LTPTRTRCDLVVVVNGRKEKIASGLLNPFVAHLKAAQDQIAKGGYTILLQPDPGADAPWF 393 L P R V VNGR +K A+ ++ PF + + A + + L P+PG PW Sbjct: 408 LLPMRGVNSDVATVNGRVKKPANTVI-PFKEYKEYASE------FVEFLVPEPGVGHPWD 460 Query: 394 T 396 T Sbjct: 461 T 461
>IF2_PSEHT (Q3IJ53) Translation initiation factor IF-2| Length = 886 Score = 28.1 bits (61), Expect = 5.2 Identities = 12/20 (60%), Positives = 13/20 (65%) Frame = -3 Query: 363 LEQDGVATLGDLVLCGLEVG 304 L Q G GD+VLCGLE G Sbjct: 582 LVQSGTLNQGDIVLCGLEYG 601
>LIPB_HAEIN (P44464) Lipoyltransferase (EC 2.3.1.-) (Lipoyl-[acyl-carrier| protein]-protein-N-lipoyltransferase) (Lipoate-protein ligase B) Length = 212 Score = 27.7 bits (60), Expect = 6.8 Identities = 13/30 (43%), Positives = 18/30 (60%) Frame = +3 Query: 69 RTCSCSLPIQVD*AFFGLDLSLPQDLNPTH 158 + CS L I+ +F GL L++ DLNP H Sbjct: 135 KICSLGLRIRRGCSFHGLALNINMDLNPFH 164
>LIPB_HAEI8 (Q4QPL7) Lipoyltransferase (EC 2.3.1.-) (Lipoyl-[acyl-carrier| protein]-protein-N-lipoyltransferase) (Lipoate-protein ligase B) Length = 212 Score = 27.7 bits (60), Expect = 6.8 Identities = 13/30 (43%), Positives = 18/30 (60%) Frame = +3 Query: 69 RTCSCSLPIQVD*AFFGLDLSLPQDLNPTH 158 + CS L I+ +F GL L++ DLNP H Sbjct: 135 KICSLGLRIRRGCSFHGLALNINMDLNPFH 164
>EX5B_ECOLI (P08394) Exodeoxyribonuclease V beta chain (EC 3.1.11.5)| (Exodeoxyribonuclease V 135 kDa polypeptide) Length = 1180 Score = 27.7 bits (60), Expect = 6.8 Identities = 19/57 (33%), Positives = 26/57 (45%) Frame = -3 Query: 399 PGEPWRVGTRIGLEQDGVATLGDLVLCGLEVGDEGVEQAGGDLLLPPIHHHNQITPG 229 PG+ WRV + GL+Q G DL + L+V GV + L P +PG Sbjct: 897 PGDNWRVTSYSGLQQRGHGIAQDL-MPRLDVDAAGVASVVEEPTLTPHQFPRGASPG 952
>URFB1_HUMAN (Q6BDS2) UHRF1-binding protein 1 (Ubiquitin-like containing PHD and| RING finger domains 1-binding protein 1) (ICBP90-binding protein 1) Length = 1440 Score = 27.3 bits (59), Expect = 8.9 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 10/34 (29%) Frame = -1 Query: 341 PLAIWSCAALRW----------ATKGLSRPEAIF 270 PL+IW+C LRW A++G +P A F Sbjct: 723 PLSIWACLPLRWQQAQARKLLLASEGRLKPSASF 756
>IF2_PHOLL (Q7MYY7) Translation initiation factor IF-2| Length = 909 Score = 27.3 bits (59), Expect = 8.9 Identities = 11/20 (55%), Positives = 13/20 (65%) Frame = -3 Query: 363 LEQDGVATLGDLVLCGLEVG 304 L Q+G GD+VLCG E G Sbjct: 604 LVQEGTLNKGDIVLCGFEYG 623
>TEGU_HHV6U (P52340) Large tegument protein| Length = 2077 Score = 27.3 bits (59), Expect = 8.9 Identities = 15/30 (50%), Positives = 19/30 (63%) Frame = +1 Query: 241 LVVVVNGRKEKIASGLLNPFVAHLKAAQDQ 330 L V VN ++ ++ LLN F AHLKA DQ Sbjct: 1191 LTVEVNNKENQLQE-LLNHFNAHLKAKMDQ 1219
>TEGU_HHV6G (P30002) Large tegument protein| Length = 2077 Score = 27.3 bits (59), Expect = 8.9 Identities = 15/30 (50%), Positives = 19/30 (63%) Frame = +1 Query: 241 LVVVVNGRKEKIASGLLNPFVAHLKAAQDQ 330 L V VN ++ ++ LLN F AHLKA DQ Sbjct: 1191 LTVEVNNKENQLQE-LLNHFNAHLKAKMDQ 1219
>EURM3_EURMA (O97370) Mite allergen Eur m 3 precursor (EC 3.4.21.-)| Length = 261 Score = 27.3 bits (59), Expect = 8.9 Identities = 12/30 (40%), Positives = 18/30 (60%) Frame = -3 Query: 363 LEQDGVATLGDLVLCGLEVGDEGVEQAGGD 274 L ++ AT+ D ++CG V D GV+ GD Sbjct: 184 LYEEAGATITDNMICGGNVADGGVDSCQGD 213
>ARHGB_RAT (Q9ES67) Rho guanine nucleotide exchange factor 11 (RhoGEF| glutamate transport modulator GTRAP48) Length = 1527 Score = 27.3 bits (59), Expect = 8.9 Identities = 12/46 (26%), Positives = 26/46 (56%) Frame = -2 Query: 142 SCGSERSRPKNAQSTWMGREQEQVRGFGRSKKKENSTSLRKRNPLL 5 SC +E+++ + W+ + + SKK++++ +KRNP+L Sbjct: 510 SCTAEKTQSAPDKDKWLPFFPKTKKQSSNSKKEKDALEDKKRNPIL 555
>TCFL5_HUMAN (Q9UL49) Transcription factor-like 5 protein (Cha transcription| factor) (HPV-16 E2-binding protein 1) (E2BP-1) Length = 452 Score = 27.3 bits (59), Expect = 8.9 Identities = 11/30 (36%), Positives = 17/30 (56%) Frame = -1 Query: 92 GEGAGASAGIWEKQEERKFNKFAEEKSSPE 3 GEGA A+ G W+ E + N + +S P+ Sbjct: 318 GEGATATQGAWQSSESSQANLGEQAQSGPQ 347
>NIR_PSECL (Q06006) Copper-containing nitrite reductase precursor (EC 1.7.2.1)| (Cu-NIR) Length = 363 Score = 27.3 bits (59), Expect = 8.9 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 8/47 (17%) Frame = -3 Query: 345 ATLGDLVLCG-------LEVGDEGVEQAGGDLLLPP-IHHHNQITPG 229 + LG VL G L G EG+++ DL+ PP +H H Q+ G Sbjct: 6 SVLGACVLLGSCASSLALAGGAEGLQRVKVDLVAPPLVHPHEQVVSG 52 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,178,804 Number of Sequences: 219361 Number of extensions: 958806 Number of successful extensions: 3277 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 3190 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3276 length of database: 80,573,946 effective HSP length: 111 effective length of database: 56,224,875 effective search space used: 1349397000 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
