>ref|XM_527429.1| PREDICTED: Pan troglodytes similar to KIAA1411 protein (LOC472050),
           mRNA
          Length = 4932

 Score = 36.2 bits (18), Expect = 2.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 8   ccatgcctggactctcct 25
           ||||||||||||||||||
Sbjct: 398 ccatgcctggactctcct 415

>emb|AL078591.18|HSDJ198I9 Human DNA sequence from clone RP1-198I9 on chromosome 6q12-13
            Contains the 3' end of a novel gene (KIAA1411, FLJ20176,
            FLJ11049), complete sequence
          Length = 144649

 Score = 36.2 bits (18), Expect = 2.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 8    ccatgcctggactctcct 25
            ||||||||||||||||||
Sbjct: 3275 ccatgcctggactctcct 3292

>emb|BX548009.4| Zebrafish DNA sequence from clone CH211-237K17 in linkage group 3,
             complete sequence
          Length = 128639

 Score = 36.2 bits (18), Expect = 2.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 10    atgcctggactctcctga 27
             ||||||||||||||||||
Sbjct: 63599 atgcctggactctcctga 63582

>emb|BX293548.5| Mouse DNA sequence from clone RP23-417K1 on chromosome 2, complete
              sequence
          Length = 195079

 Score = 36.2 bits (18), Expect = 2.2
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                    
Query: 9      catgcctggactctcctgacct 30
              ||||||||||| ||||||||||
Sbjct: 168021 catgcctggacactcctgacct 168042

>ref|XM_599229.2| PREDICTED: Bos taurus similar to Mediator of RNA polymerase II
            transcription subunit 12 (Thyroid hormone
            receptor-associated protein complex 230 kDa component)
            (Trap230) (Activator-recruited cofactor 240 KDa
            component) (ARC240) (CAG repeat protein 45)
            (OPA-containing pr... (LOC520974), mRNA
          Length = 6414

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                             
Query: 1    gtctccgccatgcctgg 17
            |||||||||||||||||
Sbjct: 6278 gtctccgccatgcctgg 6262

>ref|XM_415585.1| PREDICTED: Gallus gallus similar to dynein, axonemal, heavy
            polypeptide 9 isoform 2; dynein, axonemal, light
            intermediate chain 1; dynein, axonemal, heavy polypeptide
            17-like; ciliary dynein heavy chain (LOC417314), mRNA
          Length = 16433

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                             
Query: 11   tgcctggactctcctga 27
            |||||||||||||||||
Sbjct: 1792 tgcctggactctcctga 1808

>gb|AC183529.4| Pan troglodytes BAC clone CH251-669H19 from chromosome 3, complete
             sequence
          Length = 216860

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                              
Query: 13    cctggactctcctgacc 29
             |||||||||||||||||
Sbjct: 49327 cctggactctcctgacc 49343

>gb|AC055727.13| Homo sapiens 3 BAC RP11-271G19 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 31101

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                             
Query: 8    ccatgcctggactctcc 24
            |||||||||||||||||
Sbjct: 2790 ccatgcctggactctcc 2806

>gb|AC142316.1| Pan troglodytes BAC clone RP43-51P9 from Y, complete sequence
          Length = 146181

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                             
Query: 7    gccatgcctggactctc 23
            |||||||||||||||||
Sbjct: 7622 gccatgcctggactctc 7638

>emb|BX248098.7| Human DNA sequence from clone CTD-2173L22 on chromosome 9 Contains a
              novel gene, a zinc finger protein pseudogene, a S-phase
              kinase-associated protein 1A (p19A) (SKP1A) pseudogene and
              two CpG islands, complete sequence
          Length = 119184

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                               
Query: 8      ccatgcctggactctcc 24
              |||||||||||||||||
Sbjct: 114506 ccatgcctggactctcc 114522

>emb|BX005214.7| Human DNA sequence from clone RP11-347J14 on chromosome 9 Contains the
              C9orf36 gene for chromosome 9 open reading frame 36, two
              novel pseudogenes, a 6-pyruvoyltetrahydropterin synthase
              (PTS) pseudogene and two novel genes, complete sequence
          Length = 143520

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                               
Query: 8      ccatgcctggactctcc 24
              |||||||||||||||||
Sbjct: 131575 ccatgcctggactctcc 131559

>emb|AL589863.11| Human DNA sequence from clone RP11-310J24 on chromosome 10, complete
             sequence
          Length = 168231

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                              
Query: 7     gccatgcctggactctc 23
             |||||||||||||||||
Sbjct: 69209 gccatgcctggactctc 69225

>gb|AC117481.8| Homo sapiens 3 BAC RP11-642N14 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 138412

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                              
Query: 13    cctggactctcctgacc 29
             |||||||||||||||||
Sbjct: 52516 cctggactctcctgacc 52500

>gb|AC158581.2| Mus musculus chromosome 3, clone RP24-264G1, complete sequence
          Length = 166808

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                              
Query: 8     ccatgcctggactctcc 24
             |||||||||||||||||
Sbjct: 99738 ccatgcctggactctcc 99722

>gb|BC033956.1| Homo sapiens cDNA clone IMAGE:5286779
          Length = 886

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 8   ccatgcctggactctcc 24
           |||||||||||||||||
Sbjct: 461 ccatgcctggactctcc 477

>dbj|BS000587.2| Pan troglodytes chromosome Y clone:PTB-490L20, complete sequence
          Length = 161137

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                               
Query: 7      gccatgcctggactctc 23
              |||||||||||||||||
Sbjct: 111526 gccatgcctggactctc 111542

>gb|AC022046.11| Homo sapiens chromosome , clone RP11-13L22, complete sequence
          Length = 169553

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                               
Query: 8      ccatgcctggactctcc 24
              |||||||||||||||||
Sbjct: 117819 ccatgcctggactctcc 117835

>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                                 
Query: 7        gccatgcctggactctc 23
                |||||||||||||||||
Sbjct: 20644045 gccatgcctggactctc 20644029

>gb|AC183102.3| Pan troglodytes BAC clone CH251-717M1 from chromosome 3, complete
             sequence
          Length = 172268

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                              
Query: 13    cctggactctcctgacc 29
             |||||||||||||||||
Sbjct: 87287 cctggactctcctgacc 87271

>gb|AC016399.9| Homo sapiens chromosome 10 clone RP11-70E21, complete sequence
          Length = 173239

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                              
Query: 13    cctggactctcctgacc 29
             |||||||||||||||||
Sbjct: 36522 cctggactctcctgacc 36506

>dbj|AK145758.1| Mus musculus blastocyst blastocyst cDNA, RIKEN full-length enriched
           library, clone:I1C0038H21 product:hypothetical protein,
           full insert sequence
          Length = 3382

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 14  ctggactctcctgacct 30
           |||||||||||||||||
Sbjct: 796 ctggactctcctgacct 812

>gb|AC026370.31| Homo sapiens 12 BAC RP11-98F7 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 89843

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                              
Query: 7     gccatgcctggactctc 23
             |||||||||||||||||
Sbjct: 24319 gccatgcctggactctc 24335

>gb|AC146271.2| Pan troglodytes BAC clone CH251-26F19 from chromosome y, complete
             sequence
          Length = 207919

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                              
Query: 7     gccatgcctggactctc 23
             |||||||||||||||||
Sbjct: 69370 gccatgcctggactctc 69386

>gb|AC153986.8| Mus musculus 6 BAC RP24-105F24 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 162415

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                              
Query: 11    tgcctggactctcctga 27
             |||||||||||||||||
Sbjct: 24079 tgcctggactctcctga 24095

>gb|AF083133.1|AF083133 Mus musculus cardiac homeobox transcription factor (Nkx2-5) gene,
            complete cds
          Length = 8648

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                             
Query: 11   tgcctggactctcctga 27
            |||||||||||||||||
Sbjct: 4526 tgcctggactctcctga 4510

>gb|AC119914.10| Mus musculus chromosome 15, clone RP24-244H15, complete sequence
          Length = 213223

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                               
Query: 14     ctggactctcctgacct 30
              |||||||||||||||||
Sbjct: 102035 ctggactctcctgacct 102051

>gb|AC138388.3| Mus musculus BAC clone RP23-455J6 from 10, complete sequence
          Length = 164600

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                               
Query: 13     cctggactctcctgacc 29
              |||||||||||||||||
Sbjct: 113794 cctggactctcctgacc 113810

>gb|AC131299.11| Mus musculus chromosome 15, clone RP23-335O2, complete sequence
          Length = 215708

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                               
Query: 14     ctggactctcctgacct 30
              |||||||||||||||||
Sbjct: 189974 ctggactctcctgacct 189958

>dbj|AP000797.6| Homo sapiens genomic DNA, chromosome 11 clone:CMB9-36B5, complete
              sequence
          Length = 148490

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                               
Query: 9      catgcctggactctcct 25
              |||||||||||||||||
Sbjct: 101735 catgcctggactctcct 101719

>gb|AC004447.1|AC004447 Homo sapiens chromosome 19, overlapping cosmids R27918 and R33775,
             complete sequence
          Length = 73007

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                              
Query: 9     catgcctggactctcct 25
             |||||||||||||||||
Sbjct: 19401 catgcctggactctcct 19385

>emb|AL606916.4| Mouse DNA sequence from clone RP23-144L24 on chromosome 4, complete
             sequence
          Length = 190214

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                              
Query: 11    tgcctggactctcctga 27
             |||||||||||||||||
Sbjct: 52134 tgcctggactctcctga 52150

>gb|AC158595.25| Mus musculus 10 BAC RP24-216B14 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 231740

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                               
Query: 13     cctggactctcctgacc 29
              |||||||||||||||||
Sbjct: 157605 cctggactctcctgacc 157589

>gb|AC102278.10| Mus musculus chromosome 3, clone RP24-298A6, complete sequence
          Length = 184908

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                              
Query: 8     ccatgcctggactctcc 24
             |||||||||||||||||
Sbjct: 19826 ccatgcctggactctcc 19842


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 342,104
Number of Sequences: 3902068
Number of extensions: 342104
Number of successful extensions: 42586
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 42522
Number of HSP's gapped (non-prelim): 64
length of query: 30
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 10
effective length of database: 17,155,003,908
effective search space: 171550039080
effective search space used: 171550039080
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)