Clone Information

BLAST Search Result

Clone Name	bastl21d07
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	COPG2_MOUSE (Q9QXK3) Coatomer subunit gamma-2 (Gamma-2 coat prot...	110	6e-25
2	COPG2_HUMAN (Q9UBF2) Coatomer subunit gamma-2 (Gamma-2 coat prot...	110	8e-25
3	COPG_HUMAN (Q9Y678) Coatomer subunit gamma (Gamma-coat protein) ...	108	2e-24
4	COPG_BOVIN (P53620) Coatomer subunit gamma (Gamma-coat protein) ...	108	2e-24
5	COPG_CAEEL (Q22498) Probable coatomer subunit gamma (Gamma-coat ...	105	3e-23
6	COPG_SCHPO (P87140) Probable coatomer subunit gamma (Gamma-coat ...	89	3e-18
7	COPG_YEAST (P32074) Coatomer subunit gamma (Gamma-coat protein) ...	69	3e-12
8	MATK_ZANAE (Q9GHE5) Maturase K (Intron maturase)	36	0.025
9	MATK_ANCDI (Q8MEC9) Maturase K (Intron maturase)	35	0.033
10	MATK_ARITO (Q8MEC8) Maturase K (Intron maturase)	35	0.043
11	MATK_AMOTI (Q8MED5) Maturase K (Intron maturase)	35	0.043
12	MATK_AMOBY (Q8MEH7) Maturase K (Intron maturase)	35	0.043
13	MATK_AMOPO (Q8MEE6) Maturase K (Intron maturase)	33	0.13
14	MATK_FILMA (Q8MEC7) Maturase K (Intron maturase)	32	0.48
15	QUEA_THIDN (Q30PZ7) S-adenosylmethionine:tRNA ribosyltransferase...	31	0.62
16	VDH_STRCO (Q06539) Valine dehydrogenase (EC 1.4.1.-) (ValDH)	31	0.81
17	VDH_STRAL (O69056) Valine dehydrogenase (EC 1.4.1.-) (ValDH)	30	1.1
18	MATK_LENCU (Q8MCR6) Maturase K (Intron maturase)	30	1.1
19	MATK_CRAPL (Q5GAA8) Maturase K (Intron maturase)	30	1.4
20	MATK_SPIIN (Q8WHM7) Maturase K (Intron maturase)	30	1.8
21	ZN384_HUMAN (Q8TF68) Zinc finger protein 384 (Nuclear matrix tra...	30	1.8
22	MATK_NUPVA (O98635) Maturase K (Intron maturase)	29	2.4
23	HABP2_BOVIN (Q5E9Z2) Hyaluronan-binding protein 2 precursor (EC ...	29	2.4
24	MATK_ACOCL (Q9GHG9) Maturase K (Intron maturase)	29	3.1
25	MALR_STRR6 (P0A4T2) HTH-type transcriptional regulator malR (Mal...	29	3.1
26	MALR_STRPN (P0A4T1) HTH-type transcriptional regulator malR (Mal...	29	3.1
27	MATK_NYMOD (O98637) Maturase K (Intron maturase)	29	3.1
28	QUEA_CAMJE (Q9PHT9) S-adenosylmethionine:tRNA ribosyltransferase...	28	4.0
29	MATK_LENER (Q8MCR5) Maturase K (Intron maturase)	28	4.0
30	YS86_CAEEL (Q09382) Hypothetical protein ZK945.6	28	4.0
31	VDH_STRCM (Q53872) Valine dehydrogenase (EC 1.4.1.-) (ValDH)	28	5.3
32	ZN384_RAT (Q9EQJ4) Zinc finger protein 384 (Nuclear matrix trans...	28	5.3
33	COAT_PAVHH (P03136) Coat protein VP1 [Contains: Coat protein VP2]	28	5.3
34	TETW_BUTFI (O52836) Tetracycline resistance protein tetW (Tet(W))	28	5.3
35	SYH_PROMM (Q7V4P3) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histi...	28	5.3
36	SORC3_HUMAN (Q9UPU3) VPS10 domain-containing receptor SorCS3 pre...	28	5.3
37	MMPL3_MYCTU (O53657) Putative membrane protein mmpL3	28	5.3
38	AP4B1_MOUSE (Q9WV76) AP-4 complex subunit beta-1 (Adapter-relate...	28	5.3
39	MATK_CYPCL (Q6J9Z4) Maturase K (Intron maturase)	28	6.9
40	YBB1_SCHPO (O60063) Putative 40S ribosomal protein S4-like	28	6.9
41	RHG09_HUMAN (Q9BRR9) Rho-GTPase-activating protein 9	28	6.9
42	KU70_RHIAP (Q26228) ATP-dependent DNA helicase 2 subunit 1 (EC 3...	28	6.9
43	MATK_WOLAR (Q8WHJ9) Maturase K (Intron maturase)	28	6.9
44	SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1...	28	6.9
45	CASP8_HUMAN (Q14790) Caspase-8 precursor (EC 3.4.22.-) (CASP-8) ...	28	6.9
46	SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1	28	6.9
47	SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1...	28	6.9
48	SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1	28	6.9
49	MATK_MUSLA (Q8HV04) Maturase K (Intron maturase)	27	9.0
50	DBP9_ASPOR (Q2UFL0) ATP-dependent RNA helicase dbp9 (EC 3.6.1.-)	27	9.0
51	UL35_HCMVA (P16766) Protein UL35	27	9.0
52	MATK_NYMAL (Q6EW67) Maturase K (Intron maturase)	27	9.0
53	MATK_EURFE (O98639) Maturase K (Intron maturase)	27	9.0
54	MATK_PROLU (Q7YKM5) Maturase K (Intron maturase)	27	9.0

>COPG2_MOUSE (Q9QXK3) Coatomer subunit gamma-2 (Gamma-2 coat protein) (Gamma-2|
           COP)
          Length = 871

 Score =  110 bits (276), Expect = 6e-25
 Identities = 54/100 (54%), Positives = 74/100 (74%)
 Frame = +2

Query: 95  KDDDDSDIEYSPFFGIEKGAVLQEARAFHDPQLDARRCSQVITKLLYLINQGESFTKVEA 274
           K D++S    +PF  +EK AVLQEAR F++  ++ RRC  ++TK+LYL+NQGE F  +EA
Sbjct: 7   KKDEESGSGSNPFQHLEKSAVLQEARIFNETPINPRRCLHILTKILYLLNQGEHFGTMEA 66

Query: 275 TEVFFAVTKLFQSTDAGLRRLVYLMIKELSPSSDEVFIVT 394
           TE FFA+T+LFQS D  LRR+ YL IKE++  S++V IVT
Sbjct: 67  TEAFFAMTRLFQSNDQTLRRMCYLTIKEMATISEDVIIVT 106

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>COPG2_HUMAN (Q9UBF2) Coatomer subunit gamma-2 (Gamma-2 coat protein) (Gamma-2|
           COP)
          Length = 871

 Score =  110 bits (275), Expect = 8e-25
 Identities = 54/100 (54%), Positives = 73/100 (73%)
 Frame = +2

Query: 95  KDDDDSDIEYSPFFGIEKGAVLQEARAFHDPQLDARRCSQVITKLLYLINQGESFTKVEA 274
           K D++S    +PF  +EK AVLQEAR F++  ++ RRC  ++TK+LYL+NQGE F   EA
Sbjct: 7   KKDEESGSGSNPFQHLEKSAVLQEARIFNETPINPRRCLHILTKILYLLNQGEHFGTTEA 66

Query: 275 TEVFFAVTKLFQSTDAGLRRLVYLMIKELSPSSDEVFIVT 394
           TE FFA+T+LFQS D  LRR+ YL IKE++  S++V IVT
Sbjct: 67  TEAFFAMTRLFQSNDQTLRRMCYLTIKEMATISEDVIIVT 106

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>COPG_HUMAN (Q9Y678) Coatomer subunit gamma (Gamma-coat protein) (Gamma-COP)|
          Length = 874

 Score =  108 bits (271), Expect = 2e-24
 Identities = 54/100 (54%), Positives = 73/100 (73%)
 Frame = +2

Query: 95  KDDDDSDIEYSPFFGIEKGAVLQEARAFHDPQLDARRCSQVITKLLYLINQGESFTKVEA 274
           K D++S    +PF  +EK AVLQEAR F++  ++ R+C+ ++TK+LYLINQGE     EA
Sbjct: 7   KKDEESGGGSNPFQHLEKSAVLQEARVFNETPINPRKCAHILTKILYLINQGEHLGTTEA 66

Query: 275 TEVFFAVTKLFQSTDAGLRRLVYLMIKELSPSSDEVFIVT 394
           TE FFA+TKLFQS D  LRR+ YL IKE+S  +++V IVT
Sbjct: 67  TEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDVIIVT 106

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>COPG_BOVIN (P53620) Coatomer subunit gamma (Gamma-coat protein) (Gamma-COP)|
          Length = 874

 Score =  108 bits (271), Expect = 2e-24
 Identities = 54/100 (54%), Positives = 73/100 (73%)
 Frame = +2

Query: 95  KDDDDSDIEYSPFFGIEKGAVLQEARAFHDPQLDARRCSQVITKLLYLINQGESFTKVEA 274
           K D++S    +PF  +EK AVLQEAR F++  ++ R+C+ ++TK+LYLINQGE     EA
Sbjct: 7   KKDEESGGGSNPFQHLEKSAVLQEARVFNETPINPRKCAHILTKILYLINQGEHLGTTEA 66

Query: 275 TEVFFAVTKLFQSTDAGLRRLVYLMIKELSPSSDEVFIVT 394
           TE FFA+TKLFQS D  LRR+ YL IKE+S  +++V IVT
Sbjct: 67  TEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDVIIVT 106

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>COPG_CAEEL (Q22498) Probable coatomer subunit gamma (Gamma-coat protein)|
           (Gamma-COP)
          Length = 870

 Score =  105 bits (261), Expect = 3e-23
 Identities = 51/102 (50%), Positives = 74/102 (72%)
 Frame = +2

Query: 89  MKKDDDDSDIEYSPFFGIEKGAVLQEARAFHDPQLDARRCSQVITKLLYLINQGESFTKV 268
           MK +  D +   + +  ++K +VLQEARAF++  ++AR+C  +++KL+Y+I QGES  + 
Sbjct: 1   MKTNKKDEETGGNVYAHLDKTSVLQEARAFNETPINARKCCFILSKLIYIIQQGESIGRT 60

Query: 269 EATEVFFAVTKLFQSTDAGLRRLVYLMIKELSPSSDEVFIVT 394
           EATE FF VTKL+QS D  LRR+VYL +KEL+  SD+V IVT
Sbjct: 61  EATEAFFGVTKLWQSKDVSLRRMVYLAVKELAEVSDDVIIVT 102

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>COPG_SCHPO (P87140) Probable coatomer subunit gamma (Gamma-coat protein)|
           (Gamma-COP)
          Length = 905

 Score = 89.0 bits (219), Expect = 3e-18
 Identities = 44/103 (42%), Positives = 68/103 (66%)
 Frame = +2

Query: 86  YMKKDDDDSDIEYSPFFGIEKGAVLQEARAFHDPQLDARRCSQVITKLLYLINQGESFTK 265
           Y KKDDD  +   S F  + +  V Q+ARAF+   +  R+  ++++K+ YLI  GE F +
Sbjct: 3   YSKKDDDGDE---SIFANVNQVTVTQDARAFNSSSISPRKSRRLLSKIAYLIYTGEHFQE 59

Query: 266 VEATEVFFAVTKLFQSTDAGLRRLVYLMIKELSPSSDEVFIVT 394
            +ATE+FF +TKLFQ  D  LR+ VY++IKELS  +++V ++T
Sbjct: 60  KQATELFFGITKLFQHKDPSLRQFVYIIIKELSVVAEDVIMIT 102

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>COPG_YEAST (P32074) Coatomer subunit gamma (Gamma-coat protein) (Gamma-COP)|
          Length = 935

 Score = 68.9 bits (167), Expect = 3e-12
 Identities = 35/85 (41%), Positives = 59/85 (69%), Gaps = 1/85 (1%)
 Frame = +2

Query: 143 EKGAVLQEA-RAFHDPQLDARRCSQVITKLLYLINQGESFTKVEATEVFFAVTKLFQSTD 319
           +K  + Q+    F++  ++++RC  +I++LL L+ QGE+F + EAT +FF+++KLFQ  +
Sbjct: 19  DKMTIYQDCMNTFNESPVNSKRCRLLISRLLRLLAQGETFPQNEATALFFSISKLFQHQN 78

Query: 320 AGLRRLVYLMIKELSPSSDEVFIVT 394
             LR+ VYL IKELS  S++V + T
Sbjct: 79  DPLRQAVYLAIKELSGISEDVLMAT 103

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>MATK_ZANAE (Q9GHE5) Maturase K (Intron maturase)|
          Length = 512

 Score = 35.8 bits (81), Expect = 0.025
 Identities = 17/40 (42%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
 Frame = -1

Query: 312 DWNNLVTAKKTSVASTFVKDSPWLIK--YNNLVITCEHLL 199
           +WNN++T KK+S    F K++P L +  YN+ V+ CE +L
Sbjct: 191 NWNNIITPKKSSYG--FSKENPRLFRFLYNSYVVECESIL 228

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>MATK_ANCDI (Q8MEC9) Maturase K (Intron maturase)|
          Length = 511

 Score = 35.4 bits (80), Expect = 0.033
 Identities = 18/41 (43%), Positives = 27/41 (65%), Gaps = 3/41 (7%)
 Frame = -1

Query: 312 DWNNLVTAKKTSVASTFVKDSP---WLIKYNNLVITCEHLL 199
           +WNNL+T KK+S    F K++P   W + YN+ V+ CE +L
Sbjct: 191 NWNNLITQKKSSYG--FSKENPRLFWFL-YNSYVVECESIL 228

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>MATK_ARITO (Q8MEC8) Maturase K (Intron maturase)|
          Length = 512

 Score = 35.0 bits (79), Expect = 0.043
 Identities = 17/40 (42%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
 Frame = -1

Query: 312 DWNNLVTAKKTSVASTFVKDSP--WLIKYNNLVITCEHLL 199
           +WNNL+T KK++    F K++P  +L  YN+ V+ CE +L
Sbjct: 191 NWNNLITPKKSNYYG-FSKENPRLFLFLYNSYVVECESIL 229

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>MATK_AMOTI (Q8MED5) Maturase K (Intron maturase)|
          Length = 512

 Score = 35.0 bits (79), Expect = 0.043
 Identities = 17/40 (42%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
 Frame = -1

Query: 312 DWNNLVTAKKTSVASTFVKDSP--WLIKYNNLVITCEHLL 199
           +WNNL+T KK++    F K++P  +L  YN+ V+ CE +L
Sbjct: 191 NWNNLITPKKSNYYG-FSKENPRLFLFLYNSYVVECESIL 229

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>MATK_AMOBY (Q8MEH7) Maturase K (Intron maturase)|
          Length = 512

 Score = 35.0 bits (79), Expect = 0.043
 Identities = 17/40 (42%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
 Frame = -1

Query: 312 DWNNLVTAKKTSVASTFVKDSP--WLIKYNNLVITCEHLL 199
           +WNNL+T KK++    F K++P  +L  YN+ V+ CE +L
Sbjct: 191 NWNNLITPKKSNYYG-FSKENPRLFLFLYNSYVVECESIL 229

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>MATK_AMOPO (Q8MEE6) Maturase K (Intron maturase)|
          Length = 512

 Score = 33.5 bits (75), Expect = 0.13
 Identities = 16/39 (41%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
 Frame = -1

Query: 312 DWNNLVTAKKTSVASTFVKDSP--WLIKYNNLVITCEHL 202
           +WNNL+T KK++    F K++P  +L  YN+ V+ CE +
Sbjct: 191 NWNNLITPKKSNYYG-FSKENPRLFLFLYNSYVVECESI 228

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>MATK_FILMA (Q8MEC7) Maturase K (Intron maturase)|
          Length = 512

 Score = 31.6 bits (70), Expect = 0.48
 Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
 Frame = -1

Query: 312 DWNNLVTAKKTSVASTFVKDSP--WLIKYNNLVITCEHL 202
           +W+NL+T KK++    F K++P  +L  YN+ V+ CE +
Sbjct: 191 NWSNLITPKKSNYYG-FSKENPRLFLFLYNSYVVECESI 228

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>QUEA_THIDN (Q30PZ7) S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC|
           5.-.-.-) (Queuosine biosynthesis protein queA)
          Length = 342

 Score = 31.2 bits (69), Expect = 0.62
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = +2

Query: 83  PYMKKDDD-DSDIEYSPFFGIEKGAVLQEARAFHDPQLDARRCSQVITKLLYLINQGE-S 256
           PY++++D+ D +IEY   F  E+GAV     + H  +    R     T     ++ G  +
Sbjct: 159 PYIQREDNKDDEIEYQSVFAKEEGAVAAPTASLHFTKEQHERVCTKFTHAYITLHVGSGT 218

Query: 257 FTKVEATEV 283
           F  VE  ++
Sbjct: 219 FKPVECEKI 227

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>VDH_STRCO (Q06539) Valine dehydrogenase (EC 1.4.1.-) (ValDH)|
          Length = 363

 Score = 30.8 bits (68), Expect = 0.81
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = +2

Query: 71  EMAQPYMKKDDDDSDIEYSPFFGIEKGAVLQEARAFHDPQLDARRCSQVITKL 229
           ++A P ++KD  D  I Y+P + +  G V+Q A   H    D  RC    +K+
Sbjct: 276 QLAHPGVEKDLADRGILYAPDYVVNAGGVIQVADELHG--FDFDRCKAKASKI 326

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>VDH_STRAL (O69056) Valine dehydrogenase (EC 1.4.1.-) (ValDH)|
          Length = 363

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +2

Query: 71  EMAQPYMKKDDDDSDIEYSPFFGIEKGAVLQEARAFHDPQLDARRCSQVITKL 229
           ++A P ++KD  D  I Y+P + +  G V+Q A   H    D  RC     K+
Sbjct: 276 QLAHPGVEKDLADRGILYAPDYVVNAGGVIQVADELHG--FDFDRCKAKAAKI 326

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>MATK_LENCU (Q8MCR6) Maturase K (Intron maturase)|
          Length = 507

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = -1

Query: 333 LLRPASVDWNNLVTAKKTSVASTFVKDSP--WLIKYNNLVITCEH 205
           LLR    +WN+ +T KK    STF K +P  +L  YN  V  CE+
Sbjct: 176 LLRLFLCNWNSFITTKKKKSISTFSKINPRFFLFLYNFYV--CEY 218

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>MATK_CRAPL (Q5GAA8) Maturase K (Intron maturase)|
          Length = 507

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 11/61 (18%)
 Frame = -1

Query: 309 WNNLVTAKKTSVASTFVKDSPWLIKYNNLVITCE-----------HLLASSWGSWKARAS 163
           WN+L+T KK S + +      +L  YN+ V   E           HLL++S+G +  R  
Sbjct: 184 WNSLITPKKASSSFSKKNQRLFLFLYNSHVCEYEYFFVFIRKQSSHLLSTSYGVFLERIY 243

Query: 162 C 160
           C
Sbjct: 244 C 244

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>MATK_SPIIN (Q8WHM7) Maturase K (Intron maturase)|
          Length = 510

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = -1

Query: 306 NNLVTAKKTSVASTFVKDSPWLIK--YNNLVITCEHL 202
           NN +T KK+S    F KD+P L +  YN+ V+ CE +
Sbjct: 193 NNCITPKKSSYG--FSKDNPRLYRFLYNSYVVECESI 227

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>ZN384_HUMAN (Q8TF68) Zinc finger protein 384 (Nuclear matrix transcription|
           factor 4) (Nuclear matrix protein 4) (CAG repeat protein
           1) (CAS-interacting zinc finger protein)
          Length = 576

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +2

Query: 11  PAPPLERRMPRSLAGDLTDPEMAQPYMKKDDDDSD 115
           P PP  R+  R L   L  PEM  PY+   +DD D
Sbjct: 188 PKPPRGRKKKRMLESGL--PEMNDPYVLSPEDDDD 220

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>MATK_NUPVA (O98635) Maturase K (Intron maturase)|
          Length = 505

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
 Frame = -1

Query: 312 DWNNLVTAKKTSVASTFVKDSP--WLIKYNNLVITCEHLL 199
           +WN+L+T KK++  S F K++   +L  YN+ V  CE +L
Sbjct: 189 NWNSLITPKKST--SIFSKENQRLFLFLYNSHVYECESVL 226

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>HABP2_BOVIN (Q5E9Z2) Hyaluronan-binding protein 2 precursor (EC 3.4.21.-)|
           [Contains: Hyaluronan-binding protein 2 50 kDa heavy
           chain; Hyaluronan-binding protein 2 50 kDa heavy chain
           alternate form; Hyaluronan-binding protein 2 27 kDa
           light chain; Hyaluro
          Length = 558

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +2

Query: 191 LDARRCSQVITKLLYLINQGESFTKVEATEVFFAVTKLFQ 310
           L A  C+++ TK L ++   +  TK E  E  F V K+F+
Sbjct: 356 LTAAHCTEIKTKYLKVVLGDQDLTKTEFHEQSFGVQKIFK 395

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>MATK_ACOCL (Q9GHG9) Maturase K (Intron maturase)|
          Length = 511

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = -1

Query: 312 DWNNLVTAKKTSVASTFVKDSP--WLIKYNNLVITCEHLL 199
           +WN+L+T KK S++  F K +   +L  YN+ V  CE  L
Sbjct: 190 NWNSLITPKK-SISFLFSKGNQRLFLFLYNSYVFECESAL 228

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>MALR_STRR6 (P0A4T2) HTH-type transcriptional regulator malR (Maltose operon|
           transcriptional repressor)
          Length = 327

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +2

Query: 59  LTDPEMAQPYMKKDDDDSDIEYSPFFGIEKGAVLQEARAFHDPQLDA 199
           LT  E A  + K   D++ I ++  F  EKG    +    HDPQ+DA
Sbjct: 199 LTGYEQALKHYKLTTDNNRIYFADEFLEEKGYKFSKRLFKHDPQIDA 245

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>MALR_STRPN (P0A4T1) HTH-type transcriptional regulator malR (Maltose operon|
           transcriptional repressor)
          Length = 327

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +2

Query: 59  LTDPEMAQPYMKKDDDDSDIEYSPFFGIEKGAVLQEARAFHDPQLDA 199
           LT  E A  + K   D++ I ++  F  EKG    +    HDPQ+DA
Sbjct: 199 LTGYEQALKHYKLTTDNNRIYFADEFLEEKGYKFSKRLFKHDPQIDA 245

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>MATK_NYMOD (O98637) Maturase K (Intron maturase)|
          Length = 509

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = -1

Query: 312 DWNNLVTAKKTSVASTFVKDSP--WLIKYNNLVITCEHLL 199
           +WN+L+T+      S F K++   +L  YN+ V  CE +L
Sbjct: 191 NWNSLITSTSNKSISIFSKENQRLFLFLYNSHVYECESVL 230

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>QUEA_CAMJE (Q9PHT9) S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC|
           5.-.-.-) (Queuosine biosynthesis protein queA)
          Length = 342

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
 Frame = +2

Query: 83  PYMKKDDDDSDI-EYSPFFGIEKGAVLQEARAFH--DPQLDARRCSQVITKLLYLINQGE 253
           PY+K++D+ SD+ +Y   F    GAV     + H  +  L+  R    I  L   +  G 
Sbjct: 160 PYIKREDEKSDLKDYQSIFAKNLGAVAAPTASLHFSETMLENLRKKHEIYHLTLHVGAG- 218

Query: 254 SFTKVEATEV 283
           +F  VE   +
Sbjct: 219 TFKSVECENI 228

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>MATK_LENER (Q8MCR5) Maturase K (Intron maturase)|
          Length = 507

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = -1

Query: 333 LLRPASVDWNNLVTAKKTSVASTFVKDSP--WLIKYNNLVITCEH 205
           LLR    +WN+ +T K     STF K +P  +L  YN  V  CE+
Sbjct: 176 LLRLFLCNWNSFITTKNKKSISTFSKINPRFFLFLYNFYV--CEY 218

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>YS86_CAEEL (Q09382) Hypothetical protein ZK945.6|
          Length = 216

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +2

Query: 17  PPLERRMPRSLAGDLTDPEMAQPYMKKDDDDSDIEYSP 130
           P L  +M  S A DL+   M Q Y+K  DD  D+ + P
Sbjct: 79  PSLNTQMSFSTASDLSS--MEQDYVKASDDPFDLNHQP 114

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>VDH_STRCM (Q53872) Valine dehydrogenase (EC 1.4.1.-) (ValDH)|
          Length = 358

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +2

Query: 71  EMAQPYMKKDDDDSDIEYSPFFGIEKGAVLQEARAFHDPQLDARRCSQVITKL 229
           ++A P ++KD  D  I Y+P + +  G V+Q A        D  RC    +K+
Sbjct: 274 QLAHPGVEKDLADRSILYAPDYVVNAGGVIQVADELRG--FDFDRCKAKASKI 324

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>ZN384_RAT (Q9EQJ4) Zinc finger protein 384 (Nuclear matrix transcription|
           factor 4) (Nuclear matrix protein 4) (Cas-associated
           zinc finger protein)
          Length = 579

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = +2

Query: 11  PAPPLERRMPRSLAGDLTDPEMAQPYMKKDDDDSD 115
           P PP  R+  R L   L  PEM  PY+    DD D
Sbjct: 189 PKPPRGRKKKRMLESGL--PEMNDPYVLAPGDDDD 221

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>COAT_PAVHH (P03136) Coat protein VP1 [Contains: Coat protein VP2]|
          Length = 722

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = -1

Query: 351 IIKYTSLLRPASVDWNNLVTAKKTSVASTFVKDSPWL 241
           I+K+ + LRP ++ WN +  A   SVA++++    WL
Sbjct: 665 ILKFKAKLRP-NLTWNPVYQATTDSVANSYMNVKKWL 700

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>TETW_BUTFI (O52836) Tetracycline resistance protein tetW (Tet(W))|
          Length = 639

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 20/55 (36%), Positives = 23/55 (41%), Gaps = 9/55 (16%)
 Frame = +3

Query: 138 GLRRGLF---------CRRHGLSMIPSLMPEDARKLSPSYYI*LTKESPLQRLRP 275
           GL +GLF         C  +GL   P   P D R L+P       KES  Q L P
Sbjct: 484 GLEQGLFGWNVTDCKICFEYGLYYSPVSTPADFRSLAPIVLEQALKESGTQLLEP 538

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>SYH_PROMM (Q7V4P3) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA|
           ligase) (HisRS)
          Length = 436

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +2

Query: 134 FGIEKGAVLQEARAFHDPQLDARRCSQVITKLLYLINQGESFTKV 268
           FG+E+  +L EA A  +P   A R        LY++N+GE   +V
Sbjct: 305 FGMERLMLLLEAAASINPSGSAARLRASTRPDLYVVNRGEQAERV 349

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>SORC3_HUMAN (Q9UPU3) VPS10 domain-containing receptor SorCS3 precursor|
          Length = 1222

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 212 ASIFWHQAGDHGKPVPPAEQPPSQS 138
           A I W   G  G+P  PA +PP+ S
Sbjct: 33  AEITWDATGGPGRPAAPASRPPALS 57

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>MMPL3_MYCTU (O53657) Putative membrane protein mmpL3|
          Length = 944

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +2

Query: 14  APPLERRMPRSLAGDLTDPEMAQPYMKKDDDDSD 115
           A PL        AGD  +P  A P ++ D DDS+
Sbjct: 874 AMPLAANRSTDAAGDPAEPTAALPIIRSDGDDSE 907

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>AP4B1_MOUSE (Q9WV76) AP-4 complex subunit beta-1 (Adapter-related protein|
           complex 4 beta-1 subunit) (Beta subunit of AP-4) (AP-4
           adapter complex beta subunit)
          Length = 739

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
 Frame = +2

Query: 128 PFFGIEKGAVLQEARAFHDP--QLDARRCSQVITKLLYLINQGESFTKVEATEVFFAVTK 301
           P+ G E   V +  +A  +P  Q D  R   VI +++  + QG     ++ ++VF  + K
Sbjct: 2   PYLGSED-VVKELKKALCNPHIQADRLRYRNVIQRVIRHMTQG-----LDMSDVFMEMVK 55

Query: 302 LFQSTDAGLRRLVYLMIKELSPSSDEVFIV 391
              + D   ++LVYL +   +P   ++ ++
Sbjct: 56  ASATVDIVQKKLVYLYMGTYAPLKPDLALL 85

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>MATK_CYPCL (Q6J9Z4) Maturase K (Intron maturase)|
          Length = 516

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -1

Query: 309 WNNLVTAKKTSVASTFVKDSPWLIKYNNLVITCEHL 202
           +N+L+T+KK+  A + +K       YN+ V  CE+L
Sbjct: 198 FNSLITSKKSIYAFSRIKKRFLWFLYNSYVYECEYL 233

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>YBB1_SCHPO (O60063) Putative 40S ribosomal protein S4-like|
          Length = 327

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 165 RHGLSMIPSLMPEDARKLSPSYYI 236
           R GL+ +PS  PED   L+ +YYI
Sbjct: 243 RPGLTEVPSPFPEDLHALAYTYYI 266

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>RHG09_HUMAN (Q9BRR9) Rho-GTPase-activating protein 9|
          Length = 750

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 2   TSHPAPPLERRMPRSLAGDLTDPEMAQPYMK 94
           +S   PPL R+M RS++ D   P + +P+ +
Sbjct: 128 SSEQPPPLPRKMCRSVSTDNLSPSLLKPFQE 158

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>KU70_RHIAP (Q26228) ATP-dependent DNA helicase 2 subunit 1 (EC 3.6.1.-)|
           (ATP-dependent DNA helicase II 70 kDa subunit) (Ku
           autoantigen protein p70 homolog)
          Length = 600

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
 Frame = +2

Query: 74  MAQPYMKKDDDDSDIEYSPF-FGIEKGAVLQEARAFHDPQLDARRCSQVITKLLYLINQG 250
           M QP+M++DDD+SD E S   FG                        Q +  +L+LI+  
Sbjct: 1   MDQPWMRQDDDESDDESSTVDFG------------------------QAVDGILFLIDAT 36

Query: 251 ES-FTKVEATEVFFAVTKLFQST 316
           E  F +V+    F    K  +ST
Sbjct: 37  EGMFEEVDGDTAFMQCIKAAKST 59

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>MATK_WOLAR (Q8WHJ9) Maturase K (Intron maturase)|
          Length = 508

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = -1

Query: 312 DWNNLVTAKKTSVASTFVKDSPWLIK--YNNLVITCEHL 202
           +W+N +T KK+S    F K++P L +  YN+ V+  E +
Sbjct: 189 NWSNCITTKKSSYG--FSKENPSLYRFLYNSYVVEAESI 225

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>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1|
           (Ser/Arg-related nuclear matrix protein) (SR-related
           nuclear matrix protein of 160 kDa) (SRm160)
          Length = 904

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +1

Query: 7   PPRSTIRTSHASLPRRRPHRP 69
           PPR T R S ++ P RR HRP
Sbjct: 381 PPRKTRRLSPSASPPRRRHRP 401

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>CASP8_HUMAN (Q14790) Caspase-8 precursor (EC 3.4.22.-) (CASP-8) (ICE-like|
           apoptotic protease 5) (MORT1-associated CED-3 homolog)
           (MACH) (FADD-homologous ICE/CED-3-like protease)
           (FADD-like ICE) (FLICE) (Apoptotic cysteine protease)
           (Apoptotic protease Mc
          Length = 479

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 19/63 (30%), Positives = 32/63 (50%)
 Frame = +2

Query: 95  KDDDDSDIEYSPFFGIEKGAVLQEARAFHDPQLDARRCSQVITKLLYLINQGESFTKVEA 274
           K DDD ++    F  +EK  +L E +      +  R C+Q+   LL +IN  E F+K  +
Sbjct: 132 KLDDDMNL-LDIFIEMEKRVILGEGKL----DILKRVCAQINKSLLKIINDYEEFSKERS 186

Query: 275 TEV 283
           + +
Sbjct: 187 SSL 189

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>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1|
          Length = 917

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +1

Query: 7   PPRSTIRTSHASLPRRRPHRP 69
           PPR T R S ++ P RR HRP
Sbjct: 381 PPRKTRRLSPSASPPRRRHRP 401

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>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1|
           (Plenty-of-prolines 101)
          Length = 946

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +1

Query: 7   PPRSTIRTSHASLPRRRPHRP 69
           PPR T R S ++ P RR HRP
Sbjct: 379 PPRKTRRLSPSASPPRRRHRP 399

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>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1|
          Length = 888

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +1

Query: 7   PPRSTIRTSHASLPRRRPHRP 69
           PPR T R S ++ P RR HRP
Sbjct: 378 PPRKTRRLSPSASPPRRRHRP 398

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>MATK_MUSLA (Q8HV04) Maturase K (Intron maturase)|
          Length = 511

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -1

Query: 312 DWNNLVTAKKTSVASTFVKDSPWLIKYNNLVITCEHLL 199
           +WN+L+T KK+    +      +   YN+ V  CE LL
Sbjct: 192 NWNSLITPKKSIYVFSKENKRLFWFLYNSYVSECEFLL 229

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>DBP9_ASPOR (Q2UFL0) ATP-dependent RNA helicase dbp9 (EC 3.6.1.-)|
          Length = 605

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +2

Query: 35  MPRSL-AGDLTDPEMAQPYMKKDDDDSDIE 121
           M R L A D+  PE A    KK++DD+D E
Sbjct: 1   MKRKLDANDVPSPEAADKKEKKEEDDADFE 30

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>UL35_HCMVA (P16766) Protein UL35|
          Length = 640

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 191 AGDHGKPVPPAEQPPSQSRKMVS 123
           +G HG      EQPP Q R+MVS
Sbjct: 554 SGSHGISSADLEQPPRQRRRMVS 576

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>MATK_NYMAL (Q6EW67) Maturase K (Intron maturase)|
          Length = 507

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
 Frame = -1

Query: 312 DWNNLVTAKKTSVASTFVKDSP--WLIKYNNLVITCEHLL 199
           +WN+L+T+ K+   S F K++   +L  YN+ V  CE +L
Sbjct: 191 NWNSLITSNKS--ISIFSKENQRLFLFLYNSHVYECESVL 228

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>MATK_EURFE (O98639) Maturase K (Intron maturase)|
          Length = 507

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
 Frame = -1

Query: 312 DWNNLVTAKKTSVASTFVKDSP--WLIKYNNLVITCEHLL 199
           +WN+L+T+ K+   S F K++   +L  YN+ V  CE +L
Sbjct: 191 NWNSLITSNKS--ISIFSKENQRLFLFLYNSHVYECESVL 228

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>MATK_PROLU (Q7YKM5) Maturase K (Intron maturase)|
          Length = 500

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -1

Query: 312 DWNNLVTAKKTSVASTFVKDSPWLIKYNNLVITCEH 205
           +WN+L+T KK S + + +    +L  YN+ V  CE+
Sbjct: 176 NWNSLITPKKASSSFSKINQRLFLFLYNSHV--CEY 209


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,418,804
Number of Sequences: 219361
Number of extensions: 935419
Number of successful extensions: 3174
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 3080
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3167
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 1370455656
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result