Clone Information

BLAST Search Result

Clone Name	bastl21d07
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AK068454.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	412	e-112
2	ref\|NM_187618.1\| Oryza sativa (japonica cultivar-group), predic...	331	1e-87
3	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	147	3e-32
4	gb\|AC104473.2\| Oryza sativa (japonica cultivar-group) chromosome...	147	3e-32
5	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	147	3e-32
6	gb\|AC146746.15\| Medicago truncatula clone mth2-108p9, complete s...	52	0.001
7	gb\|AC145897.3\| Pan troglodytes BAC clone RP43-8K4 from 7, comple...	42	1.3
8	emb\|CR940310.6\| M.truncatula DNA sequence from clone MTH2-5D8 on...	42	1.3
9	emb\|CR769775.11\| Human DNA sequence from clone RP11-449H15 on ch...	42	1.3
10	emb\|AL935212.11\| Human DNA sequence from clone RP11-160N1 on chr...	42	1.3
11	emb\|BX005037.5\| Human DNA sequence from clone RP11-34H11 on chro...	42	1.3
12	emb\|AL627230.15\| Human DNA sequence from clone RP11-12A20 on chr...	42	1.3
13	emb\|AL591926.8\| Human DNA sequence from clone RP11-157L3 on chro...	42	1.3
14	emb\|AL391987.15\| Human DNA sequence from clone RP11-374M1 on chr...	42	1.3
15	emb\|AL390198.17\| Human DNA sequence from clone RP13-401N8 on chr...	42	1.3
16	emb\|AL162731.33\| Human DNA sequence from clone RP11-292F9 on chr...	42	1.3
17	emb\|AL078587.18\|HSDJ760C5 Human DNA sequence from clone RP4-760C...	42	1.3
18	gb\|AC090894.10\| Homo sapiens chromosome 17, clone RP11-744K17, c...	42	1.3
19	gb\|AC129805.7\| Homo sapiens 12 BAC RP11-125N22 (Roswell Park Can...	42	1.3
20	gb\|AC020928.7\| Homo sapiens chromosome 19 clone CTD-2162K18, com...	42	1.3
21	gb\|CP000251.1\| Anaeromyxobacter dehalogenans 2CP-C, complete genome	42	1.3
22	gb\|AC087575.11\| Homo sapiens chromosome 17, clone RP11-305L6, co...	42	1.3
23	emb\|AL627306.15\| Human DNA sequence from clone RP11-81A9 on chro...	42	1.3
24	gb\|AC166159.2\| Mus musculus BAC clone RP24-129B16 from chromosom...	40	5.3
25	gb\|AY234384.1\|AY234384S1 Rubrivivax gelatinosus strain S1 5' reg...	40	5.3
26	ref\|XM_598831.2\| PREDICTED: Bos taurus similar to PR-domain zinc...	40	5.3
27	ref\|XM_865806.1\| PREDICTED: Bos taurus similar to PR-domain zinc...	40	5.3
28	ref\|XM_867855.1\| PREDICTED: Bos taurus similar to PR-domain zinc...	40	5.3
29	gb\|AC131106.4\| Mus musculus chromosome 15 clone RP23-301M20, com...	40	5.3
30	gb\|AC104789.4\| Homo sapiens BAC clone RP11-138B1 from 7, complet...	40	5.3
31	emb\|AL663019.2\|OSJN00221 Oryza sativa genomic DNA, chromosome 4,...	40	5.3
32	gb\|AC090651.3\| Homo sapiens chromosome 15 clone RP11-344A16 map ...	40	5.3
33	gb\|AC025916.5\| Homo sapiens chromosome 15 clone CTD-2323M6 map 1...	40	5.3
34	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.3
35	gb\|AF031110.1\|AF031110 Mus musculus clone K127 candidate target ...	40	5.3
36	dbj\|BA000030.2\| Streptomyces avermitilis MA-4680 genomic DNA, co...	40	5.3
37	gb\|AE004775.1\| Pseudomonas aeruginosa PAO1, section 336 of 529 o...	40	5.3
38	ref\|XM_573525.1\| PREDICTED: Rattus norvegicus similar to 9630058...	40	5.3
39	gb\|AY880027.1\| Pseudomonas aeruginosa alginate biosynthesis prot...	40	5.3
40	gb\|AC174770.1\| Gasterosteus aculeatus clone VMRC28-84C03, comple...	40	5.3
41	emb\|AL359760.10\| Human DNA sequence from clone RP11-556K13 on ch...	40	5.3
42	emb\|AL662976.3\|OSJN00177 Oryza sativa genomic DNA, chromosome 4,...	40	5.3
43	gb\|AC166064.4\| Mus musculus BAC clone RP23-52K8 from chromosome ...	40	5.3
44	emb\|AL591946.14\| Mouse DNA sequence from clone RP23-290M7 on chr...	40	5.3
45	gb\|M30880.1\|MUSTCBYAJ Mouse T-cell receptor beta-chain V-region ...	40	5.3
46	gb\|M37181.1\|PSEALG76 P.aeruginosa alg76 gene, complete cds	40	5.3
47	dbj\|AB001942.1\| Mus musculus mRNA for TCR beta chain, partial cds	40	5.3
48	emb\|AL669955.6\| Mouse DNA sequence from clone RP23-188F1 on chro...	40	5.3

>dbj|AK068454.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013155G01, full
           insert sequence
          Length = 3214

 Score =  412 bits (208), Expect = e-112
 Identities = 328/368 (89%)
 Strand = Plus / Plus

                                                                       
Query: 29  cgtcgcatgcctcgctccctcgccggcgacctcaccgacccggagatggcgcagccctac 88
           |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 136 cgtcgcatgcctcgctccctcgccggcgacctcaccgatccggagatggcgcagccgtac 195

                                                                       
Query: 89  atgaagaaggacgacgacgactccgacatcgagtactcaccatttttcgggattgagaag 148
           ||||||||||| |||||||||   ||| | |||||||| |||||||  ||||||||||||
Sbjct: 196 atgaagaaggatgacgacgacgaggacgttgagtactcgccattttatgggattgagaag 255

                                                                       
Query: 149 ggggctgttctgcaggaggcacgggctttccatgatccccagcttgatgccagaagatgc 208
           || || ||||||||||||||| |||||||||||||||| |||||||||||||| |  |||
Sbjct: 256 ggagccgttctgcaggaggcaagggctttccatgatccgcagcttgatgccaggaagtgc 315

                                                                       
Query: 209 tcgcaagttatcaccaagttattatatttaattaaccaaggagagtcctttacaaaggtt 268
           |||||||| ||||| ||| |||| |||||| | |||||||| ||| | || |||||||||
Sbjct: 316 tcgcaagtcatcactaagctattgtatttactcaaccaaggggagacattcacaaaggtt 375

                                                                       
Query: 269 gaggccacagaagtcttctttgcagttactaagttattccagtccactgatgctggtctc 328
           |||||||||||||| ||||||||||| || ||| | ||||||||||  ||||||||||| 
Sbjct: 376 gaggccacagaagttttctttgcagtaacaaagctgttccagtccaaggatgctggtctt 435

                                                                       
Query: 329 aggaggctggtgtatttgatgatcaaagagctttctccatcatcagatgaggttttcata 388
           ||| ||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||
Sbjct: 436 aggcggctggtgtatttaatgatcaaagagctttcaccatcatcagatgaggttatcata 495

                   
Query: 389 gtcacaag 396
           ||||||||
Sbjct: 496 gtcacaag 503

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>ref|NM_187618.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2481

 Score =  331 bits (167), Expect = 1e-87
 Identities = 284/323 (87%)
 Strand = Plus / Plus

                                                                       
Query: 74  atggcgcagccctacatgaagaaggacgacgacgactccgacatcgagtactcaccattt 133
           ||||||||||| |||||||||||||| |||||||||   ||| | |||||||| ||||||
Sbjct: 1   atggcgcagccgtacatgaagaaggatgacgacgacgaggacgttgagtactcgccattt 60

                                                                       
Query: 134 ttcgggattgagaagggggctgttctgcaggaggcacgggctttccatgatccccagctt 193
           |  |||||||||||||| || ||||||||||||||| |||||||||||||||| ||||||
Sbjct: 61  tatgggattgagaagggagccgttctgcaggaggcaagggctttccatgatccgcagctt 120

                                                                       
Query: 194 gatgccagaagatgctcgcaagttatcaccaagttattatatttaattaaccaaggagag 253
           |||||||| |  ||||||||||| ||||| ||| |||| |||||| | |||||||| |||
Sbjct: 121 gatgccaggaagtgctcgcaagtcatcactaagctattgtatttactcaaccaaggggag 180

                                                                       
Query: 254 tcctttacaaaggttgaggccacagaagtcttctttgcagttactaagttattccagtcc 313
            | || ||||||||||||||||||||||| ||||||||||| || ||| | |||||||||
Sbjct: 181 acattcacaaaggttgaggccacagaagttttctttgcagtaacaaagctgttccagtcc 240

                                                                       
Query: 314 actgatgctggtctcaggaggctggtgtatttgatgatcaaagagctttctccatcatca 373
           |  ||||||||||| ||| ||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 241 aaggatgctggtcttaggcggctggtgtatttaatgatcaaagagctttcaccatcatca 300

                                  
Query: 374 gatgaggttttcatagtcacaag 396
           ||||||||| |||||||||||||
Sbjct: 301 gatgaggttatcatagtcacaag 323

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  147 bits (74), Expect = 3e-32
 Identities = 107/118 (90%)
 Strand = Plus / Plus

                                                                           
Query: 264     aggttgaggccacagaagtcttctttgcagttactaagttattccagtccactgatgctg 323
               ||||||||||||||||||| ||||||||||| || ||| | ||||||||||  |||||||
Sbjct: 6646358 aggttgaggccacagaagttttctttgcagtaacaaagctgttccagtccaaggatgctg 6646417

                                                                         
Query: 324     gtctcaggaggctggtgtatttgatgatcaaagagctttctccatcatcagatgaggt 381
               |||| ||| ||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 6646418 gtcttaggcggctggtgtatttaatgatcaaagagctttcaccatcatcagatgaggt 6646475



 Score =  137 bits (69), Expect = 3e-29
 Identities = 78/81 (96%)
 Strand = Plus / Plus

                                                                           
Query: 29      cgtcgcatgcctcgctccctcgccggcgacctcaccgacccggagatggcgcagccctac 88
               |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 6644825 cgtcgcatgcctcgctccctcgccggcgacctcaccgatccggagatggcgcagccgtac 6644884

                                    
Query: 89      atgaagaaggacgacgacgac 109
               ||||||||||| |||||||||
Sbjct: 6644885 atgaagaaggatgacgacgac 6644905



 Score =  115 bits (58), Expect = 1e-22
 Identities = 88/98 (89%)
 Strand = Plus / Plus

                                                                           
Query: 119     gagtactcaccatttttcgggattgagaagggggctgttctgcaggaggcacgggctttc 178
               |||||||| |||||||  |||||||||||||| || ||||||||||||||| ||||||||
Sbjct: 6646007 gagtactcgccattttatgggattgagaagggagccgttctgcaggaggcaagggctttc 6646066

                                                     
Query: 179     catgatccccagcttgatgccagaagatgctcgcaagt 216
               |||||||| |||||||||||||| |  |||||||||||
Sbjct: 6646067 catgatccgcagcttgatgccaggaagtgctcgcaagt 6646104

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>gb|AC104473.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1626B05,
             complete sequence
          Length = 127946

 Score =  147 bits (74), Expect = 3e-32
 Identities = 107/118 (90%)
 Strand = Plus / Plus

                                                                         
Query: 264   aggttgaggccacagaagtcttctttgcagttactaagttattccagtccactgatgctg 323
             ||||||||||||||||||| ||||||||||| || ||| | ||||||||||  |||||||
Sbjct: 31906 aggttgaggccacagaagttttctttgcagtaacaaagctgttccagtccaaggatgctg 31965

                                                                       
Query: 324   gtctcaggaggctggtgtatttgatgatcaaagagctttctccatcatcagatgaggt 381
             |||| ||| ||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 31966 gtcttaggcggctggtgtatttaatgatcaaagagctttcaccatcatcagatgaggt 32023



 Score =  137 bits (69), Expect = 3e-29
 Identities = 78/81 (96%)
 Strand = Plus / Plus

                                                                         
Query: 29    cgtcgcatgcctcgctccctcgccggcgacctcaccgacccggagatggcgcagccctac 88
             |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 30373 cgtcgcatgcctcgctccctcgccggcgacctcaccgatccggagatggcgcagccgtac 30432

                                  
Query: 89    atgaagaaggacgacgacgac 109
             ||||||||||| |||||||||
Sbjct: 30433 atgaagaaggatgacgacgac 30453



 Score =  115 bits (58), Expect = 1e-22
 Identities = 88/98 (89%)
 Strand = Plus / Plus

                                                                         
Query: 119   gagtactcaccatttttcgggattgagaagggggctgttctgcaggaggcacgggctttc 178
             |||||||| |||||||  |||||||||||||| || ||||||||||||||| ||||||||
Sbjct: 31555 gagtactcgccattttatgggattgagaagggagccgttctgcaggaggcaagggctttc 31614

                                                   
Query: 179   catgatccccagcttgatgccagaagatgctcgcaagt 216
             |||||||| |||||||||||||| |  |||||||||||
Sbjct: 31615 catgatccgcagcttgatgccaggaagtgctcgcaagt 31652

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  147 bits (74), Expect = 3e-32
 Identities = 107/118 (90%)
 Strand = Plus / Plus

                                                                           
Query: 264     aggttgaggccacagaagtcttctttgcagttactaagttattccagtccactgatgctg 323
               ||||||||||||||||||| ||||||||||| || ||| | ||||||||||  |||||||
Sbjct: 6645571 aggttgaggccacagaagttttctttgcagtaacaaagctgttccagtccaaggatgctg 6645630

                                                                         
Query: 324     gtctcaggaggctggtgtatttgatgatcaaagagctttctccatcatcagatgaggt 381
               |||| ||| ||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 6645631 gtcttaggcggctggtgtatttaatgatcaaagagctttcaccatcatcagatgaggt 6645688



 Score =  137 bits (69), Expect = 3e-29
 Identities = 78/81 (96%)
 Strand = Plus / Plus

                                                                           
Query: 29      cgtcgcatgcctcgctccctcgccggcgacctcaccgacccggagatggcgcagccctac 88
               |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 6644038 cgtcgcatgcctcgctccctcgccggcgacctcaccgatccggagatggcgcagccgtac 6644097

                                    
Query: 89      atgaagaaggacgacgacgac 109
               ||||||||||| |||||||||
Sbjct: 6644098 atgaagaaggatgacgacgac 6644118



 Score =  115 bits (58), Expect = 1e-22
 Identities = 88/98 (89%)
 Strand = Plus / Plus

                                                                           
Query: 119     gagtactcaccatttttcgggattgagaagggggctgttctgcaggaggcacgggctttc 178
               |||||||| |||||||  |||||||||||||| || ||||||||||||||| ||||||||
Sbjct: 6645220 gagtactcgccattttatgggattgagaagggagccgttctgcaggaggcaagggctttc 6645279

                                                     
Query: 179     catgatccccagcttgatgccagaagatgctcgcaagt 216
               |||||||| |||||||||||||| |  |||||||||||
Sbjct: 6645280 catgatccgcagcttgatgccaggaagtgctcgcaagt 6645317

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>gb|AC146746.15| Medicago truncatula clone mth2-108p9, complete sequence
          Length = 95118

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 71/86 (82%)
 Strand = Plus / Plus

                                                                         
Query: 122   tactcaccatttttcgggattgagaagggggctgttctgcaggaggcacgggctttccat 181
             ||||| || ||||| |||||||| |||||||||||||| || ||||| |||| |||  ||
Sbjct: 24662 tactccccttttttggggattgaaaagggggctgttcttcaagaggcccgggtttttaat 24721

                                       
Query: 182   gatccccagcttgatgccagaagatg 207
             ||||| || || ||||| || |||||
Sbjct: 24722 gatccacaactagatgctaggagatg 24747



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 42/49 (85%)
 Strand = Plus / Plus

                                                              
Query: 264   aggttgaggccacagaagtcttctttgcagttactaagttattccagtc 312
             ||||||| ||||||||||| |||||| | ||||| ||| | ||||||||
Sbjct: 25167 aggttgaagccacagaagttttcttttctgttaccaagcttttccagtc 25215

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>gb|AC145897.3| Pan troglodytes BAC clone RP43-8K4 from 7, complete sequence
          Length = 153704

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 267   ttgaggccacagaagtcttct 287
             |||||||||||||||||||||
Sbjct: 29610 ttgaggccacagaagtcttct 29590

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>emb|CR940310.6| M.truncatula DNA sequence from clone MTH2-5D8 on chromosome 3, complete
              sequence
          Length = 121689

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                       
Query: 272    gccacagaagtcttctttgcagttactaagttattccagtc 312
              ||||||||||| |||||||| || |||||| | ||||||||
Sbjct: 119220 gccacagaagttttctttgctgtcactaagcttttccagtc 119260

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>emb|CR769775.11| Human DNA sequence from clone RP11-449H15 on chromosome 9 Contains a
            novel gene, complete sequence
          Length = 169430

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 267  ttgaggccacagaagtcttct 287
            |||||||||||||||||||||
Sbjct: 6982 ttgaggccacagaagtcttct 6962

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>emb|AL935212.11| Human DNA sequence from clone RP11-160N1 on chromosome 9 Contains eight
             novel pseudogenes, two novel genes and three CpG islands,
             complete sequence
          Length = 181647

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 267   ttgaggccacagaagtcttct 287
             |||||||||||||||||||||
Sbjct: 56609 ttgaggccacagaagtcttct 56629

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>emb|BX005037.5| Human DNA sequence from clone RP11-34H11 on chromosome 9 Contains two CpG
              islands, complete sequence
          Length = 173181

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 267    ttgaggccacagaagtcttct 287
              |||||||||||||||||||||
Sbjct: 165581 ttgaggccacagaagtcttct 165561

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>emb|AL627230.15| Human DNA sequence from clone RP11-12A20 on chromosome 9 Contains six
            novel pseudogenes, the FAM27B gene for family with
            sequence similarity 27, member B, a pseudogene similar to
            part of ribosomal protein L10 (RPL10) and four CpG
            islands, complete sequence
          Length = 194246

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 267  ttgaggccacagaagtcttct 287
            |||||||||||||||||||||
Sbjct: 8137 ttgaggccacagaagtcttct 8157

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>emb|AL591926.8| Human DNA sequence from clone RP11-157L3 on chromosome 9 Contains
            five novel pseudogenes, a pseudogene similar to part of
            ribosomal protein L10 (RPL10) and two CpG islands,
            complete sequence
          Length = 182366

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 267  ttgaggccacagaagtcttct 287
            |||||||||||||||||||||
Sbjct: 7611 ttgaggccacagaagtcttct 7631

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>emb|AL391987.15| Human DNA sequence from clone RP11-374M1 on chromosome 9 Contains the
             FAM27C gene for family with sequence similarity 27, member
             C, three novel genes, five novel pseudogenes and six CpG
             islands, complete sequence
          Length = 202081

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 267   ttgaggccacagaagtcttct 287
             |||||||||||||||||||||
Sbjct: 72620 ttgaggccacagaagtcttct 72640

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>emb|AL390198.17| Human DNA sequence from clone RP13-401N8 on chromosome 20 Contains three
              novel genes, a vomeronasal organ phermone receptor family
              pseudogene, a novel zinc-finger pseudogene and nine CpG
              islands, complete sequence
          Length = 167717

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 267    ttgaggccacagaagtcttct 287
              |||||||||||||||||||||
Sbjct: 121896 ttgaggccacagaagtcttct 121876

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>emb|AL162731.33| Human DNA sequence from clone RP11-292F9 on chromosome 9 Contains four
             novel genes, three novel pseudogenes and two CpG islands,
             complete sequence
          Length = 188062

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 267   ttgaggccacagaagtcttct 287
             |||||||||||||||||||||
Sbjct: 29025 ttgaggccacagaagtcttct 29045

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>emb|AL078587.18|HSDJ760C5 Human DNA sequence from clone RP4-760C5 on chromosome 20 Contains an exon
              for a protein similar to  ABCC7 (ATP-binding cassette,
              sub-family C (CFTR/MRP),member 7), two novel genes and two
              CpG islands, complete sequence
          Length = 124489

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 267    ttgaggccacagaagtcttct 287
              |||||||||||||||||||||
Sbjct: 123679 ttgaggccacagaagtcttct 123699

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>gb|AC090894.10| Homo sapiens chromosome 17, clone RP11-744K17, complete sequence
          Length = 150680

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 267    ttgaggccacagaagtcttct 287
              |||||||||||||||||||||
Sbjct: 140663 ttgaggccacagaagtcttct 140643

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>gb|AC129805.7| Homo sapiens 12 BAC RP11-125N22 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 165378

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 267    ttgaggccacagaagtcttct 287
              |||||||||||||||||||||
Sbjct: 106268 ttgaggccacagaagtcttct 106288

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>gb|AC020928.7| Homo sapiens chromosome 19 clone CTD-2162K18, complete sequence
          Length = 109666

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 267   ttgaggccacagaagtcttct 287
             |||||||||||||||||||||
Sbjct: 29053 ttgaggccacagaagtcttct 29033

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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 55      cgacctcaccgacccggagatggcg 79
               |||||||||||| ||||||||||||
Sbjct: 2798426 cgacctcaccgatccggagatggcg 2798450



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 48     tcgccggcgacctcaccgacc 68
              |||||||||||||||||||||
Sbjct: 167698 tcgccggcgacctcaccgacc 167718

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>gb|AC087575.11| Homo sapiens chromosome 17, clone RP11-305L6, complete sequence
          Length = 198756

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 267   ttgaggccacagaagtcttct 287
             |||||||||||||||||||||
Sbjct: 47072 ttgaggccacagaagtcttct 47052

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>emb|AL627306.15| Human DNA sequence from clone RP11-81A9 on chromosome 9, complete
             sequence
          Length = 51133

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 267   ttgaggccacagaagtcttct 287
             |||||||||||||||||||||
Sbjct: 44152 ttgaggccacagaagtcttct 44172

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>gb|AC166159.2| Mus musculus BAC clone RP24-129B16 from chromosome 15, complete sequence
          Length = 216481

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 253    gtcctttacaaaggttgagg 272
              ||||||||||||||||||||
Sbjct: 158484 gtcctttacaaaggttgagg 158503

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>gb|AY234384.1|AY234384S1 Rubrivivax gelatinosus strain S1 5' region photosynthesis gene
            cluster, partial sequence
          Length = 24637

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 52   cggcgacctcaccgacccgg 71
            ||||||||||||||||||||
Sbjct: 1930 cggcgacctcaccgacccgg 1949

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>ref|XM_598831.2| PREDICTED: Bos taurus similar to PR-domain zinc finger protein 7
           (LOC520584), partial mRNA
          Length = 699

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 250 agagtcctttacaaaggttg 269
           ||||||||||||||||||||
Sbjct: 195 agagtcctttacaaaggttg 176

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>ref|XM_865806.1| PREDICTED: Bos taurus similar to PR-domain zinc finger protein 7
           (LOC614338), partial mRNA
          Length = 928

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 250 agagtcctttacaaaggttg 269
           ||||||||||||||||||||
Sbjct: 228 agagtcctttacaaaggttg 209

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>ref|XM_867855.1| PREDICTED: Bos taurus similar to PR-domain zinc finger protein 7
           (LOC615918), partial mRNA
          Length = 1050

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 250 agagtcctttacaaaggttg 269
           ||||||||||||||||||||
Sbjct: 183 agagtcctttacaaaggttg 164

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>gb|AC131106.4| Mus musculus chromosome 15 clone RP23-301M20, complete sequence
          Length = 218875

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 253  gtcctttacaaaggttgagg 272
            ||||||||||||||||||||
Sbjct: 4660 gtcctttacaaaggttgagg 4679

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>gb|AC104789.4| Homo sapiens BAC clone RP11-138B1 from 7, complete sequence
          Length = 142048

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 276   cagaagtcttctttgcagttacta 299
             |||||||||||||| |||||||||
Sbjct: 20248 cagaagtcttctttccagttacta 20271

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>emb|AL663019.2|OSJN00221 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0038O10,
              complete sequence
          Length = 141545

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 48     tcgccggcgacctcaccgac 67
              ||||||||||||||||||||
Sbjct: 137246 tcgccggcgacctcaccgac 137265

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>gb|AC090651.3| Homo sapiens chromosome 15 clone RP11-344A16 map 15q21.3, complete
              sequence
          Length = 208230

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 147    agggggctgttctgcaggag 166
              ||||||||||||||||||||
Sbjct: 131061 agggggctgttctgcaggag 131042

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>gb|AC025916.5| Homo sapiens chromosome 15 clone CTD-2323M6 map 15q21.3, complete
             sequence
          Length = 109403

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 147   agggggctgttctgcaggag 166
             ||||||||||||||||||||
Sbjct: 27285 agggggctgttctgcaggag 27266

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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 48       tcgccggcgacctcaccgac 67
                ||||||||||||||||||||
Sbjct: 26360669 tcgccggcgacctcaccgac 26360688

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>gb|AF031110.1|AF031110 Mus musculus clone K127 candidate target gene for EVI-1 zinc finger
           protein
          Length = 331

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 226 gttattatatttaattaacc 245
           ||||||||||||||||||||
Sbjct: 69  gttattatatttaattaacc 88

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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 52      cggcgacctcaccgacccggagat 75
               |||| |||||||||||||||||||
Sbjct: 7262592 cggccacctcaccgacccggagat 7262615

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>gb|AE004775.1| Pseudomonas aeruginosa PAO1, section 336 of 529 of the complete
            genome
          Length = 11407

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 100  cgacgacgactccgacatcg 119
            ||||||||||||||||||||
Sbjct: 3890 cgacgacgactccgacatcg 3909

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>ref|XM_573525.1| PREDICTED: Rattus norvegicus similar to 9630058J23Rik protein
           (LOC498297), mRNA
          Length = 1325

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 96  aggacgacgacgactccgac 115
           ||||||||||||||||||||
Sbjct: 881 aggacgacgacgactccgac 900

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>gb|AY880027.1| Pseudomonas aeruginosa alginate biosynthesis protein AlgE (algE)
            gene, partial cds
          Length = 1172

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 100  cgacgacgactccgacatcg 119
            ||||||||||||||||||||
Sbjct: 1050 cgacgacgactccgacatcg 1069

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>gb|AC174770.1| Gasterosteus aculeatus clone VMRC28-84C03, complete sequence
          Length = 124367

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 40     tcgctccctcgccggcgacc 59
              ||||||||||||||||||||
Sbjct: 108070 tcgctccctcgccggcgacc 108051

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>emb|AL359760.10| Human DNA sequence from clone RP11-556K13 on chromosome 1 Contains a
             laminin receptor 1 (ribosomal protein SA, 67kDa) (LAMR1)
             pseudogene and the 3' end of the OLFM3 gene for
             olfactomedin 3, complete sequence
          Length = 79057

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 359   ctttctccatcatcagatga 378
             ||||||||||||||||||||
Sbjct: 31542 ctttctccatcatcagatga 31523

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>emb|AL662976.3|OSJN00177 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0074L08,
            complete sequence
          Length = 171551

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 48   tcgccggcgacctcaccgac 67
            ||||||||||||||||||||
Sbjct: 1302 tcgccggcgacctcaccgac 1321

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>gb|AC166064.4| Mus musculus BAC clone RP23-52K8 from chromosome 17, complete sequence
          Length = 245671

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 268   tgaggccacagaagtcttct 287
             ||||||||||||||||||||
Sbjct: 10654 tgaggccacagaagtcttct 10635

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>emb|AL591946.14| Mouse DNA sequence from clone RP23-290M7 on chromosome 15, complete
              sequence
          Length = 188892

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 156    ttctgcaggaggcacgggct 175
              ||||||||||||||||||||
Sbjct: 165986 ttctgcaggaggcacgggct 165967

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>gb|M30880.1|MUSTCBYAJ Mouse T-cell receptor beta-chain V-region (V12-D1.1-J1.1-C0-C2)
           mRNA, partial cds
          Length = 281

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 271 ggccacagaagtcttctttg 290
           ||||||||||||||||||||
Sbjct: 155 ggccacagaagtcttctttg 174

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>gb|M37181.1|PSEALG76 P.aeruginosa alg76 gene, complete cds
          Length = 2328

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 100  cgacgacgactccgacatcg 119
            ||||||||||||||||||||
Sbjct: 1579 cgacgacgactccgacatcg 1598

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>dbj|AB001942.1| Mus musculus mRNA for TCR beta chain, partial cds
          Length = 42

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 271 ggccacagaagtcttctttg 290
           ||||||||||||||||||||
Sbjct: 21  ggccacagaagtcttctttg 40

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>emb|AL669955.6| Mouse DNA sequence from clone RP23-188F1 on chromosome 4, complete
             sequence
          Length = 114881

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 286   ctttgcagttactaagttattcca 309
             ||||| ||||||||||||||||||
Sbjct: 35896 ctttgtagttactaagttattcca 35873


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,068,399
Number of Sequences: 3902068
Number of extensions: 4068399
Number of successful extensions: 80100
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 79775
Number of HSP's gapped (non-prelim): 325
length of query: 396
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 374
effective length of database: 17,147,199,772
effective search space: 6413052714728
effective search space used: 6413052714728
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result