ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bastl21d04 |
|---|---|
| Clone Library Name | barley_pub |
>EMIL1_HUMAN (Q9Y6C2) EMILIN-1 precursor (Elastin microfibril interface-located| protein 1) (Elastin microfibril interfacer 1) Length = 1016 Score = 35.8 bits (81), Expect = 0.027 Identities = 28/94 (29%), Positives = 41/94 (43%), Gaps = 6/94 (6%) Frame = +2 Query: 38 GLRLWCRWLPCA------PASRAFAEHLKPHLGPMRARSAHLCVRGGSWRPCQDGTARDA 199 G+ + ++ PCA P S + L+P R R A+ V WR CQ D Sbjct: 75 GVETYVKYQPCAWGQPQCPQSIMYRRFLRP-----RYRVAYKTVTDMEWRCCQGYGGDDC 129 Query: 200 SRSGLAALGVRASKPWSHGQPGHFCSPSVNGSVA 301 + S ALG +S P +P P+++GS A Sbjct: 130 AESPAPALGPASSTPRPLARPAR---PNLSGSSA 160
>YDM5_SCHPO (P87136) Hypothetical protein C57A7.05 in chromosome I| Length = 1337 Score = 31.2 bits (69), Expect = 0.67 Identities = 14/42 (33%), Positives = 24/42 (57%) Frame = -1 Query: 229 HTQSSKARARSIPRSPILARPPASSTHAQVSRSCSHGAEVRF 104 H+ K AR IP+ P ++ P+SS+ + S+S H ++F Sbjct: 111 HSFFEKDNARDIPQQPSHSQNPSSSSSSSSSQSSQHSTHLQF 152
>VGLG_HHV2H (P13290) Glycoprotein G| Length = 699 Score = 30.0 bits (66), Expect = 1.5 Identities = 15/37 (40%), Positives = 22/37 (59%) Frame = -1 Query: 256 SVTPWLARTHTQSSKARARSIPRSPILARPPASSTHA 146 + TP T+T S+ A A++ P +P PP +STHA Sbjct: 428 AATPGAGHTNTSSASA-AKTPPTTPAPTTPPPTSTHA 463
>CELR2_MOUSE (Q9R0M0) Cadherin EGF LAG seven-pass G-type receptor 2 precursor| (Flamingo 1) (mFmi1) Length = 2920 Score = 30.0 bits (66), Expect = 1.5 Identities = 27/85 (31%), Positives = 35/85 (41%), Gaps = 14/85 (16%) Frame = +2 Query: 8 ERTSHHEPHH-GLRLWC----RWLPCAPASR---------AFAEHLKPHLGPMRARSAHL 145 E T H PHH GLR+WC +P P+S HL P G + H Sbjct: 78 ELTGHLVPHHDGLRVWCPESGAHIPLPPSSEGCPWSCRLLGIGGHLSPQ-GTLTLPEEHP 136 Query: 146 CVRGGSWRPCQDGTARDASRSGLAA 220 C++ R CQ + + A GL A Sbjct: 137 CLKAPRLR-CQ--SCKLAQAPGLRA 158
>SELPA_BRARE (Q98SV1) Selenoprotein Pa precursor (zSelPa)| Length = 367 Score = 24.3 bits (51), Expect(2) = 2.1 Identities = 9/25 (36%), Positives = 15/25 (60%) Frame = -1 Query: 187 SPILARPPASSTHAQVSRSCSHGAE 113 +P++ RP A + +V SC GA+ Sbjct: 260 TPMMKRPCAKHSRCKVQYSCQQGAD 284 Score = 23.9 bits (50), Expect(2) = 2.1 Identities = 8/18 (44%), Positives = 11/18 (61%) Frame = -3 Query: 233 HAHPEQQGQSEKHPSQSH 180 H H E QG++E+H H Sbjct: 209 HGHHEHQGEAERHRHGHH 226
>CELR2_HUMAN (Q9HCU4) Cadherin EGF LAG seven-pass G-type receptor 2 precursor| (Epidermal growth factor-like 2) (Multiple epidermal growth factor-like domains 3) (Flamingo 1) Length = 2923 Score = 29.3 bits (64), Expect = 2.5 Identities = 27/85 (31%), Positives = 34/85 (40%), Gaps = 14/85 (16%) Frame = +2 Query: 8 ERTSHHEPHH-GLRLWC----RWLPCAPASR---------AFAEHLKPHLGPMRARSAHL 145 E T H PHH GLR+WC +P PA HL P G + H Sbjct: 78 ELTGHLVPHHDGLRVWCPESEAHIPLPPAPEGCPWSCRLLGIGGHLSPQ-GKLTLPEEHP 136 Query: 146 CVRGGSWRPCQDGTARDASRSGLAA 220 C++ R CQ + + A GL A Sbjct: 137 CLKAPRLR-CQ--SCKLAQAPGLRA 158
>LOLA6_DROME (Q9V5M3) Longitudinals lacking protein, isoforms N/O/W/X/Y| Length = 878 Score = 28.9 bits (63), Expect = 3.3 Identities = 12/29 (41%), Positives = 16/29 (55%) Frame = -3 Query: 233 HAHPEQQGQSEKHPSQSHLGTASSFLHAR 147 H HP+QQ Q ++ + HL S HAR Sbjct: 556 HQHPQQQHQPQQQQHRQHLTIQQSQTHAR 584
>SUH_XENLA (Q91880) Suppressor of hairless protein homolog (X-Su(H))| Length = 501 Score = 28.9 bits (63), Expect = 3.3 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%) Frame = +1 Query: 73 SSLQSFC*APKTAPRPHASTIGSLVRAWRKLEA--VPRWDCEGCFS 204 S+ +F P+ PRPH S G+++RA L A P + EG ++ Sbjct: 438 STSLTFTYTPEPGPRPHCSAAGAILRANSSLLASNEPNTNSEGSYT 483
>TAF4_HUMAN (O00268) Transcription initiation factor TFIID subunit 4| (Transcription initiation factor TFIID 135 kDa subunit) (TAF(II)135) (TAFII-135) (TAFII135) (TAFII-130) (TAFII130) Length = 1085 Score = 28.9 bits (63), Expect = 3.3 Identities = 18/48 (37%), Positives = 25/48 (52%) Frame = +2 Query: 191 RDASRSGLAALGVRASKPWSHGQPGHFCSPSVNGSVAELTADVGTVRR 334 RDA+ + LAA+G R + PG S GSV ++ VGT R+ Sbjct: 1002 RDANLTALAAIGPRKKRKVDCPGPGSGAEGSGPGSVVPGSSGVGTPRQ 1049
>VE2_HPV22 (P50768) Regulatory protein E2| Length = 436 Score = 28.5 bits (62), Expect = 4.3 Identities = 16/61 (26%), Positives = 27/61 (44%) Frame = -3 Query: 284 RSENRSVLAVRDSMACSHAHPEQQGQSEKHPSQSHLGTASSFLHARTSEPIVLAWGRGAV 105 RS +RS R+S+ P++ G + + + H G + L A P++L G Sbjct: 305 RSRSRSRSRTRESVDGGGVAPDEVGATLRSIGRQHSGRLAQLLDAAKDPPVILLRGAANT 364 Query: 104 L 102 L Sbjct: 365 L 365
>EMBP2_CAVPO (P35709) Eosinophil granule major basic protein 2 precursor (MBP-2)| Length = 234 Score = 28.1 bits (61), Expect = 5.7 Identities = 21/65 (32%), Positives = 24/65 (36%), Gaps = 2/65 (3%) Frame = +2 Query: 20 HHEPHHGL--RLWCRWLPCAPASRAFAEHLKPHLGPMRARSAHLCVRGGSWRPCQDGTAR 193 HH+ H + LW W A +P G R LC RGG WR G R Sbjct: 178 HHKHFHWVDGTLWNFWYWAAG---------QPWRGNNSGRCVTLCARGGHWRRSHCGVRR 228 Query: 194 DASRS 208 S S Sbjct: 229 AFSCS 233
>EMBP1_CAVPO (P22032) Eosinophil granule major basic protein 1 precursor (MBP-1)| Length = 233 Score = 28.1 bits (61), Expect = 5.7 Identities = 13/30 (43%), Positives = 14/30 (46%) Frame = +2 Query: 104 KPHLGPMRARSAHLCVRGGSWRPCQDGTAR 193 +P G R R LC RGG WR G R Sbjct: 198 QPWGGRQRGRCVTLCARGGHWRRSHCGKRR 227
>AEGA_ECOLI (P37127) Protein aegA| Length = 659 Score = 28.1 bits (61), Expect = 5.7 Identities = 10/25 (40%), Positives = 15/25 (60%) Frame = -2 Query: 330 RTVPTSAVSSATDPLTLGEQKCPGC 256 R+ P A+S D + + +QKC GC Sbjct: 66 RSCPNGAISHVDDSIQVNQQKCIGC 90
>ABCG5_HUMAN (Q9H222) ATP-binding cassette sub-family G member 5 (Sterolin-1)| Length = 651 Score = 28.1 bits (61), Expect = 5.7 Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 1/48 (2%) Frame = +1 Query: 70 RSSLQSFC*APKTAPRPHASTIGSLVRAWRKLEAV-PRWDCEGCFSLW 210 R S S AP TAP PH ++G L ++ V P WD C W Sbjct: 19 RGSQSSLEGAPATAPEPH--SLGILHASYSVSHRVRPWWDITSCRQQW 64
>NIFE_KLEPN (P08737) Nitrogenase iron-molybdenum cofactor biosynthesis protein| nifE Length = 457 Score = 28.1 bits (61), Expect = 5.7 Identities = 12/37 (32%), Positives = 18/37 (48%) Frame = -3 Query: 278 ENRSVLAVRDSMACSHAHPEQQGQSEKHPSQSHLGTA 168 + +LA+ D AC H H ++ G S P + G A Sbjct: 2 KGNEILALLDEPACEHNHKQKSGCSAPKPGATAAGCA 38
>LYAM3_RAT (P98106) P-selectin precursor (Granule membrane protein 140)| (GMP-140) (PADGEM) (Leukocyte-endothelial cell adhesion molecule 3) (LECAM3) (CD62P antigen) Length = 768 Score = 28.1 bits (61), Expect = 5.7 Identities = 24/81 (29%), Positives = 31/81 (38%), Gaps = 6/81 (7%) Frame = -1 Query: 337 GSSDCPHVGGEF-----CH*SINARRTEVSWLSVTPWLARTHTQSSKARARSIPRSPI-L 176 GS DC HV GEF CH S N E+ + + + P+ Sbjct: 519 GSLDCSHVHGEFSVGSTCHFSCN-EEFELLGSRNVECTVSGRWSAPPPTCKGVTSLPVPS 577 Query: 175 ARPPASSTHAQVSRSCSHGAE 113 R PA +T Q + SC H E Sbjct: 578 VRCPALTTPGQGTMSCRHHLE 598
>ALN_YEAST (P32375) Allantoinase (EC 3.5.2.5)| Length = 460 Score = 27.7 bits (60), Expect = 7.4 Identities = 17/44 (38%), Positives = 23/44 (52%) Frame = -3 Query: 278 ENRSVLAVRDSMACSHAHPEQQGQSEKHPSQSHLGTASSFLHAR 147 E VLA D+M HA + + ++ P QSH SSFL +R Sbjct: 178 EALKVLAEEDTMMMFHAELPKAHEDQQQPEQSH-REYSSFLSSR 220
>EMIL1_MOUSE (Q99K41) EMILIN-1 precursor (Elastin microfibril interface-located| protein 1) (Elastin microfibril interfacer 1) Length = 1017 Score = 27.7 bits (60), Expect = 7.4 Identities = 24/84 (28%), Positives = 32/84 (38%), Gaps = 1/84 (1%) Frame = +2 Query: 53 CRW-LPCAPASRAFAEHLKPHLGPMRARSAHLCVRGGSWRPCQDGTARDASRSGLAALGV 229 C W P S + L+P R R A+ V WR CQ D + LG Sbjct: 87 CGWGQPHCSRSIMYRSFLRP-----RYRVAYKTVTDMEWRCCQGYGGDDCGEGPASVLGP 141 Query: 230 RASKPWSHGQPGHFCSPSVNGSVA 301 S P +P P+++GS A Sbjct: 142 APSTPLPRPRP---VRPNLSGSSA 162
>HIS5_EMENI (Q9P4P9) Imidazole glycerol phosphate synthase hisHF (IGP synthase)| (ImGP synthase) (IGPS) [Includes: Glutamine amidotransferase (EC 2.4.2.-); Cyclase (EC 4.1.3.-)] Length = 553 Score = 27.7 bits (60), Expect = 7.4 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%) Frame = -3 Query: 254 RDSMACSHAHPEQQGQSE-KHPSQSHLGTASSFLHARTS 141 RD++ + HPE+ GQ HPS+ +++ F H R S Sbjct: 185 RDNIFATQFHPEKSGQGRPTHPSRFLGRSSAPFCHIRDS 223
>SYT5_HUMAN (O00445) Synaptotagmin-5 (Synaptotagmin V) (SytV)| Length = 386 Score = 27.3 bits (59), Expect = 9.7 Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 4/29 (13%) Frame = +1 Query: 133 IGSLVRAWRKLEAVPRWDCEG----CFSL 207 +G V+AWR+L+A PR + E CFSL Sbjct: 219 LGRPVQAWRELQAAPREEQEKLGDICFSL 247
>MYLK_HUMAN (Q15746) Myosin light chain kinase, smooth muscle and non-muscle| isozymes (EC 2.7.11.18) (MLCK) [Contains: Telokin (Kinase-related protein) (KRP)] Length = 1914 Score = 27.3 bits (59), Expect = 9.7 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 1/62 (1%) Frame = +2 Query: 149 VRGGSWR-PCQDGTARDASRSGLAALGVRASKPWSHGQPGHFCSPSVNGSVAELTADVGT 325 V GG + P ++G++ S L A V +SKP S+ QP P N AE +G Sbjct: 984 VLGGKKKLPAENGSS---SAETLNAKAVESSKPLSNAQPSGPLKPVGNAKPAETLKPMGN 1040 Query: 326 VR 331 + Sbjct: 1041 AK 1042
>ABC3G_PAPAN (Q694B7) DNA dC->dU-editing enzyme APOBEC-3G (EC 3.5.4.-)| Length = 383 Score = 27.3 bits (59), Expect = 9.7 Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 6/33 (18%) Frame = +1 Query: 163 LEAVPRWDCEG------CFSLWPCCSGCACEQA 243 L+ +P W +G CF+ W C CA E A Sbjct: 263 LDLIPFWKLDGQQYRVTCFTSWSPCFSCAQEMA 295
>ABC3G_MACNG (Q694C4) DNA dC->dU-editing enzyme APOBEC-3G (EC 3.5.4.-)| Length = 383 Score = 27.3 bits (59), Expect = 9.7 Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 6/33 (18%) Frame = +1 Query: 163 LEAVPRWDCEG------CFSLWPCCSGCACEQA 243 L+ +P W +G CF+ W C CA E A Sbjct: 263 LDLIPFWKLDGQQYRVTCFTSWSPCFSCAQEMA 295
>YPE1_RHORU (P23138) Hypothetical 28 kDa protein in petA 5'region| Length = 255 Score = 27.3 bits (59), Expect = 9.7 Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 5/36 (13%) Frame = +2 Query: 119 PMRARSAHLC-----VRGGSWRPCQDGTARDASRSG 211 P+ R A C G +WRPC D R A+R G Sbjct: 73 PLGGRDALACGLKGPAVGEAWRPCADAGLRAAARPG 108
>ABC3G_MACMU (Q7YR23) DNA dC->dU-editing enzyme APOBEC-3G (EC 3.5.4.-)| (Fragment) Length = 370 Score = 27.3 bits (59), Expect = 9.7 Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 6/33 (18%) Frame = +1 Query: 163 LEAVPRWDCEG------CFSLWPCCSGCACEQA 243 L+ +P W +G CF+ W C CA E A Sbjct: 256 LDLIPFWKLDGQQYRVTCFTSWSPCFSCAQEMA 288
>SUH_MOUSE (P31266) Recombining binding protein suppressor of hairless (J| kappa-recombination signal binding protein) (RBP-J kappa) Length = 526 Score = 27.3 bits (59), Expect = 9.7 Identities = 11/27 (40%), Positives = 17/27 (62%) Frame = +1 Query: 73 SSLQSFC*APKTAPRPHASTIGSLVRA 153 S+ +F P+ PRPH S G+++RA Sbjct: 463 STSLTFTYTPEPGPRPHCSAAGAILRA 489
>ABC3G_MACFA (Q694C2) DNA dC->dU-editing enzyme APOBEC-3G (EC 3.5.4.-)| Length = 384 Score = 27.3 bits (59), Expect = 9.7 Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 6/33 (18%) Frame = +1 Query: 163 LEAVPRWDCEG------CFSLWPCCSGCACEQA 243 L+ +P W +G CF+ W C CA E A Sbjct: 264 LDLIPFWKLDGQQYRVTCFTSWSPCFSCAQEMA 296
>LIRP_LOCMI (P15131) LIRP precursor (Locusta insulin-related peptide)| [Contains: LIRP B chain; 5 kDa peptide (C chain); LIRP A chain] Length = 145 Score = 27.3 bits (59), Expect = 9.7 Identities = 11/28 (39%), Positives = 19/28 (67%) Frame = -1 Query: 244 WLARTHTQSSKARARSIPRSPILARPPA 161 W ++ ++++A A ++P PILARP A Sbjct: 81 WSGQSADEAAEAAAAALPPYPILARPSA 108
>BNC2_MOUSE (Q8BMQ3) Zinc finger protein basonuclin-2| Length = 1127 Score = 27.3 bits (59), Expect = 9.7 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 4/57 (7%) Frame = -3 Query: 284 RSENRSVLAVRDSMACSHAHPEQQGQSEKHPSQSHLGTAS----SFLHARTSEPIVL 126 R +R+ + DSM PE+ ++E S+ LG S LH+ SE +++ Sbjct: 726 RCISRTEIRRADSMTSEDQEPERDYENESESSEPKLGEESMEGDEHLHSEVSEKVLM 782
>MELPH_MOUSE (Q91V27) Melanophilin (Exophilin-3) (Leaden protein)| (Synaptotagmin-like protein 2a) (Slac2-a) (Slp homolog lacking C2 domains a) Length = 590 Score = 27.3 bits (59), Expect = 9.7 Identities = 9/11 (81%), Positives = 11/11 (100%) Frame = -3 Query: 242 ACSHAHPEQQG 210 +CSHAHPE+QG Sbjct: 91 SCSHAHPEEQG 101
>NKTR_MOUSE (P30415) NK-tumor recognition protein (Natural-killer cells| cyclophilin-related protein) (NK-TR protein) Length = 1453 Score = 27.3 bits (59), Expect = 9.7 Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 8/47 (17%) Frame = -1 Query: 238 ARTHTQSSKARARSIPRSPILARPPASSTH--------AQVSRSCSH 122 +R++T+S R+RS+P S L+R P+S +H +Q SRS S+ Sbjct: 701 SRSYTRS---RSRSLPTSRSLSRSPSSRSHSPNKYSDGSQHSRSSSY 744 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,327,509 Number of Sequences: 219361 Number of extensions: 903467 Number of successful extensions: 3456 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 3287 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3453 length of database: 80,573,946 effective HSP length: 87 effective length of database: 61,489,539 effective search space used: 1475748936 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
