Clone Name | bastl21d03 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | UL61_HCMVA (P16818) Hypothetical protein UL61 | 28 | 5.4 | 2 | ATRIP_HUMAN (Q8WXE1) ATR-interacting protein (ATM and Rad3-relat... | 28 | 9.2 |
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>UL61_HCMVA (P16818) Hypothetical protein UL61| Length = 431 Score = 28.5 bits (62), Expect = 5.4 Identities = 12/28 (42%), Positives = 18/28 (64%) Frame = +2 Query: 2 RRRTTGHLPSKRRRTSRGAAAAQAPEEG 85 RRR T PS++++ RG A++A EG Sbjct: 176 RRRPTAATPSRKKKARRGPKASKAGREG 203
>ATRIP_HUMAN (Q8WXE1) ATR-interacting protein (ATM and| Rad3-related-interacting protein) Length = 791 Score = 27.7 bits (60), Expect = 9.2 Identities = 14/26 (53%), Positives = 18/26 (69%) Frame = +2 Query: 14 TGHLPSKRRRTSRGAAAAQAPEEGNP 91 TGH PSKR +RG +AA AP+ +P Sbjct: 26 TGHPPSKR---ARGFSAAAAPDPDDP 48 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.314 0.128 0.445 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 17,469,056 Number of Sequences: 219361 Number of extensions: 224200 Number of successful extensions: 728 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 666 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 727 length of database: 80,573,946 effective HSP length: 21 effective length of database: 75,967,365 effective search space used: 1823216760 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits)