ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl21d03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1UL61_HCMVA (P16818) Hypothetical protein UL61 28 5.4
2ATRIP_HUMAN (Q8WXE1) ATR-interacting protein (ATM and Rad3-relat... 28 9.2

>UL61_HCMVA (P16818) Hypothetical protein UL61|
          Length = 431

 Score = 28.5 bits (62), Expect = 5.4
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 2   RRRTTGHLPSKRRRTSRGAAAAQAPEEG 85
           RRR T   PS++++  RG  A++A  EG
Sbjct: 176 RRRPTAATPSRKKKARRGPKASKAGREG 203



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>ATRIP_HUMAN (Q8WXE1) ATR-interacting protein (ATM and|
          Rad3-related-interacting protein)
          Length = 791

 Score = 27.7 bits (60), Expect = 9.2
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = +2

Query: 14 TGHLPSKRRRTSRGAAAAQAPEEGNP 91
          TGH PSKR   +RG +AA AP+  +P
Sbjct: 26 TGHPPSKR---ARGFSAAAAPDPDDP 48


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.314    0.128    0.445 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,469,056
Number of Sequences: 219361
Number of extensions: 224200
Number of successful extensions: 728
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 80,573,946
effective HSP length: 21
effective length of database: 75,967,365
effective search space used: 1823216760
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
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