>ref|NM_192531.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2370

 Score = 60.0 bits (30), Expect = 5e-07
 Identities = 43/46 (93%), Gaps = 1/46 (2%)
 Strand = Plus / Plus

                                                         
Query: 9   gatgatgctgaaaaaa-gcgctctttcaagttccctttcattgctt 53
           |||||||||||||||| ||||||||||||||| || ||||||||||
Sbjct: 334 gatgatgctgaaaaaaagcgctctttcaagtttccattcattgctt 379

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 46.1 bits (23), Expect = 0.008
 Identities = 30/31 (96%), Gaps = 1/31 (3%)
 Strand = Plus / Plus

                                               
Query: 9        gatgatgctgaaaaaa-gcgctctttcaagt 38
                |||||||||||||||| ||||||||||||||
Sbjct: 22773101 gatgatgctgaaaaaaagcgctctttcaagt 22773131

>dbj|AP003492.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0712E02
          Length = 158084

 Score = 46.1 bits (23), Expect = 0.008
 Identities = 30/31 (96%), Gaps = 1/31 (3%)
 Strand = Plus / Plus

                                            
Query: 9     gatgatgctgaaaaaa-gcgctctttcaagt 38
             |||||||||||||||| ||||||||||||||
Sbjct: 90490 gatgatgctgaaaaaaagcgctctttcaagt 90520

>emb|CR543861.1| Acinetobacter sp. ADP1 complete genome
          Length = 3598621

 Score = 38.2 bits (19), Expect = 1.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 9       gatgatgctgaaaaaagcg 27
               |||||||||||||||||||
Sbjct: 1625215 gatgatgctgaaaaaagcg 1625197

>gb|AE000657.1| Aquifex aeolicus VF5, complete genome
          Length = 1551335

 Score = 38.2 bits (19), Expect = 1.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 28      ctctttcaagttccctttc 46
               |||||||||||||||||||
Sbjct: 1052895 ctctttcaagttccctttc 1052877

>gb|AC147646.2| Gallus gallus BAC clone CH261-13L1 from chromosome unknown, complete
              sequence
          Length = 238934

 Score = 38.2 bits (19), Expect = 1.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 27     gctctttcaagttcccttt 45
              |||||||||||||||||||
Sbjct: 227534 gctctttcaagttcccttt 227516

>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome
          Length = 3730232

 Score = 36.2 bits (18), Expect = 7.3
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 9      gatgatgctgaaaaaagc 26
              ||||||||||||||||||
Sbjct: 513007 gatgatgctgaaaaaagc 513024

>ref|XM_515541.1| PREDICTED: Pan troglodytes similar to FLJ00175 protein (LOC459314),
           mRNA
          Length = 1701

 Score = 36.2 bits (18), Expect = 7.3
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 2   agttccggatgatgctga 19
           ||||||||||||||||||
Sbjct: 524 agttccggatgatgctga 541

>gb|AE017138.1| Yersinia pestis biovar Medievalis str. 91001 section 12 of 16 of the
              complete genome
          Length = 290924

 Score = 36.2 bits (18), Expect = 7.3
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 9      gatgatgctgaaaaaagc 26
              ||||||||||||||||||
Sbjct: 190073 gatgatgctgaaaaaagc 190090

>gb|AE006148.1| Pasteurella multocida subsp. multocida str. Pm70 section 115 of 204 of
             the complete genome
          Length = 11751

 Score = 36.2 bits (18), Expect = 7.3
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 13    atgctgaaaaaagcgctc 30
             ||||||||||||||||||
Sbjct: 11686 atgctgaaaaaagcgctc 11703

>gb|AE009952.1| Yersinia pestis KIM, complete genome
          Length = 4600755

 Score = 36.2 bits (18), Expect = 7.3
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                 
Query: 9       gatgatgctgaaaaaagc 26
               ||||||||||||||||||
Sbjct: 3827355 gatgatgctgaaaaaagc 3827338

>gb|AC161355.3| Mus musculus chromosome 1, clone RP24-149A24, complete sequence
          Length = 179242

 Score = 36.2 bits (18), Expect = 7.3
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 28     ctctttcaagttcccttt 45
              ||||||||||||||||||
Sbjct: 158040 ctctttcaagttcccttt 158057

>gb|AY515251.1| Danio rerio brain-specific homeodomain protein (bsx) mRNA, complete
           cds
          Length = 848

 Score = 36.2 bits (18), Expect = 7.3
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 4   ttccggatgatgctgaaa 21
           ||||||||||||||||||
Sbjct: 375 ttccggatgatgctgaaa 358

>emb|AL138810.10| Human DNA sequence from clone RP1-179L10 on chromosome 11p12-14.1
              Contains a gene encoding the dihydroxylipoamide
              dehydrogenase-binding protein of pyruvate dehydrogenase
              complex (E3-binding protein), a gene similar to the CGI-29
              protein, a CpG island, ESTs, STSs and GSSs, complete
              sequence
          Length = 128228

 Score = 36.2 bits (18), Expect = 7.3
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 32     ttcaagttccctttcatt 49
              ||||||||||||||||||
Sbjct: 111569 ttcaagttccctttcatt 111552

>gb|AC129146.3| Rattus norvegicus 2 BAC CH230-266D19 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 180291

 Score = 36.2 bits (18), Expect = 7.3
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 32     ttcaagttccctttcatt 49
              ||||||||||||||||||
Sbjct: 134292 ttcaagttccctttcatt 134309

>emb|BX936398.1| Yersinia pseudotuberculosis IP32953 genome, complete sequence
          Length = 4744671

 Score = 36.2 bits (18), Expect = 7.3
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                 
Query: 9       gatgatgctgaaaaaagc 26
               ||||||||||||||||||
Sbjct: 3959761 gatgatgctgaaaaaagc 3959744

>emb|BX294153.1| Pirellula sp. strain 1 complete genome; segment 21/24
          Length = 293350

 Score = 36.2 bits (18), Expect = 7.3
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 36    agttccctttcattgctt 53
             ||||||||||||||||||
Sbjct: 55236 agttccctttcattgctt 55219

>emb|AJ414144.1| Yersinia pestis strain CO92 complete genome; segment 4/20
          Length = 208050

 Score = 36.2 bits (18), Expect = 7.3
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 9     gatgatgctgaaaaaagc 26
             ||||||||||||||||||
Sbjct: 96737 gatgatgctgaaaaaagc 96754



 Score = 36.2 bits (18), Expect = 7.3
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 9     gatgatgctgaaaaaagc 26
             ||||||||||||||||||
Sbjct: 95249 gatgatgctgaaaaaagc 95266



 Score = 36.2 bits (18), Expect = 7.3
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 9     gatgatgctgaaaaaagc 26
             ||||||||||||||||||
Sbjct: 93535 gatgatgctgaaaaaagc 93552

>emb|AJ298105.1|HSA298105 Homo sapiens PDX1 gene for lipoyl-containing component X, exons 1-11
          Length = 128228

 Score = 36.2 bits (18), Expect = 7.3
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 32    ttcaagttccctttcatt 49
             ||||||||||||||||||
Sbjct: 16660 ttcaagttccctttcatt 16677

>gb|AC018653.29| Homo sapiens 12 BAC RP11-273B20 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 172155

 Score = 36.2 bits (18), Expect = 7.3
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 35    aagttccctttcattgct 52
             ||||||||||||||||||
Sbjct: 28784 aagttccctttcattgct 28801

>gb|AC122705.2| Homo sapiens chromosome 5 clone RP11-113N15, complete sequence
          Length = 68035

 Score = 36.2 bits (18), Expect = 7.3
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 32    ttcaagttccctttcatt 49
             ||||||||||||||||||
Sbjct: 57715 ttcaagttccctttcatt 57698

>gb|AC107928.3| Homo sapiens chromosome 11, clone RP11-412L22, complete sequence
          Length = 160764

 Score = 36.2 bits (18), Expect = 7.3
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 32     ttcaagttccctttcatt 49
              ||||||||||||||||||
Sbjct: 132183 ttcaagttccctttcatt 132200

>gb|AC091900.3| Homo sapiens chromosome 5 clone RP11-158K14, complete sequence
          Length = 180679

 Score = 36.2 bits (18), Expect = 7.3
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 32     ttcaagttccctttcatt 49
              ||||||||||||||||||
Sbjct: 155659 ttcaagttccctttcatt 155676

>gb|L29282.1|CRECPRPS3 Chlamydomonas eugametos cytochrome b-559 beta subunit, protein L of
           photosystem II, cytochrome b6/f complex protein, subunit
           V, and ribosomal protein S3 genes, complete cds;
           chloroplast genes for chloroplast products
          Length = 6846

 Score = 36.2 bits (18), Expect = 7.3
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 18  gaaaaaagcgctctttca 35
           ||||||||||||||||||
Sbjct: 740 gaaaaaagcgctctttca 757

>ref|XM_687721.1| PREDICTED: Danio rerio similar to brain-specific homeodomain
           protein (LOC573364), mRNA
          Length = 836

 Score = 36.2 bits (18), Expect = 7.3
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 4   ttccggatgatgctgaaa 21
           ||||||||||||||||||
Sbjct: 369 ttccggatgatgctgaaa 352

>gb|AC139021.11| Mus musculus chromosome 1, clone RP23-448C15, complete sequence
          Length = 166133

 Score = 36.2 bits (18), Expect = 7.3
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 28     ctctttcaagttcccttt 45
              ||||||||||||||||||
Sbjct: 152610 ctctttcaagttcccttt 152593

>emb|BX276087.14| Zebrafish DNA sequence from clone CH211-270M20 in linkage group 10,
             complete sequence
          Length = 167208

 Score = 36.2 bits (18), Expect = 7.3
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 4     ttccggatgatgctgaaa 21
             ||||||||||||||||||
Sbjct: 56038 ttccggatgatgctgaaa 56055

>gb|AC027135.6|AC027135 Arabidopsis thaliana chromosome 1 BAC T8E3 genomic sequence, complete
             sequence
          Length = 80139

 Score = 36.2 bits (18), Expect = 7.3
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 31    tttcaagttccctttcat 48
             ||||||||||||||||||
Sbjct: 23902 tttcaagttccctttcat 23885

>ref|NM_214727.1| Danio rerio brain specific homeobox (bsx), mRNA
          Length = 848

 Score = 36.2 bits (18), Expect = 7.3
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 4   ttccggatgatgctgaaa 21
           ||||||||||||||||||
Sbjct: 375 ttccggatgatgctgaaa 358

>gb|AF271892.1|AF271892 Pisum sativum DEAD box protein P68 (P68) mRNA, complete cds
          Length = 2058

 Score = 36.2 bits (18), Expect = 7.3
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 3   gttccggatgatgctgaa 20
           ||||||||||||||||||
Sbjct: 136 gttccggatgatgctgaa 119

>emb|BX120005.6| Zebrafish DNA sequence from clone RP71-56I13 in linkage group 10,
             complete sequence
          Length = 129782

 Score = 36.2 bits (18), Expect = 7.3
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 4     ttccggatgatgctgaaa 21
             ||||||||||||||||||
Sbjct: 97884 ttccggatgatgctgaaa 97901

>dbj|AP001827.6| Homo sapiens genomic DNA, chromosome 11 clone:RP11-236L10, complete
             sequence
          Length = 167639

 Score = 36.2 bits (18), Expect = 7.3
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 31    tttcaagttccctttcat 48
             ||||||||||||||||||
Sbjct: 42209 tttcaagttccctttcat 42226

>dbj|AP002407.3| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-767M8, complete
             sequence
          Length = 176292

 Score = 36.2 bits (18), Expect = 7.3
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 8     ggatgatgctgaaaaaag 25
             ||||||||||||||||||
Sbjct: 18539 ggatgatgctgaaaaaag 18556

>gb|CP000102.1| Methanosphaera stadtmanae DSM 3091, complete genome
          Length = 1767403

 Score = 36.2 bits (18), Expect = 7.3
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 9      gatgatgctgaaaaaagc 26
              ||||||||||||||||||
Sbjct: 155841 gatgatgctgaaaaaagc 155858


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 470,751
Number of Sequences: 3902068
Number of extensions: 470751
Number of successful extensions: 118318
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 117938
Number of HSP's gapped (non-prelim): 377
length of query: 53
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 33
effective length of database: 17,155,003,908
effective search space: 566115128964
effective search space used: 566115128964
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)