>RIMS1_HUMAN (Q86UR5) Regulating synaptic membrane exocytosis protein 1|
            (Rab3-interacting molecule 1) (RIM 1)
          Length = 1692

 Score = 35.0 bits (79), Expect = 0.090
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +2

Query: 116  IDRARGQQERIHQNKVIACDNTIVRGSQSH-HDTGVYGQVHSASVIDSTKEMQEQAE 283
            +DR +  +  IH+++  +CDN   + S S   D     +  SAS + ST  M EQ+E
Sbjct: 1314 LDREQYSKYNIHKDQYRSCDNVSAKSSDSDVSDVSAISRTSSASRLSSTSFMSEQSE 1370

>SIPA_SALTY (Q56027) Cell invasion protein sipA (Effector protein sipA)|
          Length = 685

 Score = 32.3 bits (72), Expect = 0.58
 Identities = 27/87 (31%), Positives = 35/87 (40%), Gaps = 6/87 (6%)
 Frame = +2

Query: 38  DISASRSSQNHSETRSDV--NSISNISLIDRARGQQERIHQNKVIACDNTIVRGSQ---- 199
           +I+ +  S NHS   S    NS S++    R        +  K I    T +  SQ    
Sbjct: 292 NININIDSSNHSVDNSKHINNSRSHVDNSQRHIDNSNHDNSRKTIDNSRTFIDNSQRNGE 351

Query: 200 SHHDTGVYGQVHSASVIDSTKEMQEQA 280
           SHH T      HS S +DST    E A
Sbjct: 352 SHHSTNSSNVSHSHSRVDSTTHQTETA 378

>SIPA_SALTI (P74849) Cell invasion protein sipA (Effector protein sipA)|
          Length = 685

 Score = 32.3 bits (72), Expect = 0.58
 Identities = 27/87 (31%), Positives = 35/87 (40%), Gaps = 6/87 (6%)
 Frame = +2

Query: 38  DISASRSSQNHSETRSDV--NSISNISLIDRARGQQERIHQNKVIACDNTIVRGSQ---- 199
           +I+ +  S NHS   S    NS S++    R        +  K I    T +  SQ    
Sbjct: 292 NININIDSSNHSVDNSKHINNSRSHVDNSQRHIDNSNHDNSRKTIDNSRTFIDNSQRHGE 351

Query: 200 SHHDTGVYGQVHSASVIDSTKEMQEQA 280
           SHH T      HS S +DST    E A
Sbjct: 352 SHHSTNSSNVSHSHSRVDSTTHQTETA 378

>SIPA_SALEN (Q8VQB5) Cell invasion protein sipA (Effector protein sipA)|
          Length = 685

 Score = 32.3 bits (72), Expect = 0.58
 Identities = 27/87 (31%), Positives = 35/87 (40%), Gaps = 6/87 (6%)
 Frame = +2

Query: 38  DISASRSSQNHSETRSDV--NSISNISLIDRARGQQERIHQNKVIACDNTIVRGSQ---- 199
           +I+ +  S NHS   S    NS S++    R        +  K I    T +  SQ    
Sbjct: 292 NININIDSSNHSVDNSKHINNSRSHVDNSQRHIDNSNHDNSRKTIDNSRTFIDNSQRNGE 351

Query: 200 SHHDTGVYGQVHSASVIDSTKEMQEQA 280
           SHH T      HS S +DST    E A
Sbjct: 352 SHHSTNSSNVSHSHSRVDSTTHQTETA 378

>RIMS1_RAT (Q9JIR4) Regulating synaptic membrane exocytosis protein 1|
            (Rab3-interacting molecule 1) (RIM 1)
          Length = 1615

 Score = 31.6 bits (70), Expect = 0.99
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +2

Query: 116  IDRARGQQERIHQNKVIACDNTIVRGSQSH-HDTGVYGQVHSASVIDSTKEMQEQAE 283
            +D  +  +  IH+++  +CDN   + S S   D     +  S S + ST  M EQ+E
Sbjct: 1237 LDHEQYSKYNIHKDQYRSCDNASAKSSDSDVSDVSAISRASSTSRLSSTSFMSEQSE 1293

>PYRF_FUSNN (Q8RG83) Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) (OMP|
           decarboxylase) (OMPDCase) (OMPdecase)
          Length = 237

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 21/92 (22%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
 Frame = +2

Query: 8   HVDVSTIHASDISASRSSQNHSETRSDVNS-ISNISLIDRARGQQERIHQNKVIACDNTI 184
           ++D+ T+HA+  S        + T + VN+ +  I+ +     +  R  QN   + + ++
Sbjct: 80  NIDILTVHAAGGSEMLKGAKRAMTEAGVNTKVIAITQLTSTSEEDMRKEQNIQTSIEESV 139

Query: 185 VRGSQSHHDTGVYGQVHSASVIDSTKEMQEQA 280
           +  ++   ++GV G V S   +  TK+++EQ+
Sbjct: 140 LNYARLAKESGVDGVVSS---VLETKKIREQS 168

>PGCA_BOVIN (P13608) Aggrecan core protein precursor (Cartilage-specific|
            proteoglycan core protein) (CSPCP)
          Length = 2364

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 8    HVDVSTIHASDISASRSSQNHSETRSDVNSISNI 109
            H+++ST    D+S   S + H ET S V  IS +
Sbjct: 1237 HLEISTSGVEDLSVLPSGEGHLETSSGVEDISRL 1270

>ORC3_SCHPO (Q10067) Origin recognition complex subunit 3|
          Length = 690

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 11/58 (18%), Positives = 27/58 (46%)
 Frame = +2

Query: 17  VSTIHASDISASRSSQNHSETRSDVNSISNISLIDRARGQQERIHQNKVIACDNTIVR 190
           +S +H + +    S Q H E R ++  + +I+ +++         +  +  C+N + R
Sbjct: 309 ISPLHLTTLRTVPSFQRHIEQRLEIGDLESINYVEKMLNDDTYFQEMVIQMCENLLYR 366

>FA44A_HUMAN (Q8NFC6) Protein FAM44A|
          Length = 502

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 20/94 (21%), Positives = 39/94 (41%), Gaps = 1/94 (1%)
 Frame = +2

Query: 2   LTHVDVSTIHASDISASRSSQNHSETRSDVNSISNISLIDRARGQQERIHQNKVIACDNT 181
           LT + VS++H SD+S+           SD      I+  D  + +Q +       + +  
Sbjct: 403 LTDITVSSVHTSDLSSFEEDTEEEVVTSDSMEEGEITSDDEEKNKQNKTKTQTSDSSEGK 462

Query: 182 IVRGSQSH-HDTGVYGQVHSASVIDSTKEMQEQA 280
                 ++ H   +Y + +S S  + T E + Q+
Sbjct: 463 TKSVRHAYVHKPYLYSKYYSDSDDELTVEQRRQS 496

>CPI3_RAT (P05544) Contrapsin-like protease inhibitor 3 precursor (CPI-23)|
           (Serine protease inhibitor 1) (SPI-1)
          Length = 413

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 164 IACDNTIVRGSQSHHDTGVYGQVHSASVIDSTKE 265
           + CD T+ R + SH D G   Q+HS ++  S  +
Sbjct: 18  VLCDGTLGRDTLSHEDHGKGRQLHSLTLASSNTD 51

>GT2D1_MOUSE (Q9JI57) General transcription factor II-I repeat domain-containing|
            protein 1 (GTF2I repeat domain-containing protein 1)
            (Binding factor for early enhancer)
          Length = 1104

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = +2

Query: 35   SDISASRSSQNHSETRSDVNSISNISLIDRARGQQERIHQNKV 163
            + +S+S SS + S     V S + ISL+ ++RG +  +H N V
Sbjct: 1023 NSVSSSSSSSSSSSNPESVASTNQISLVVKSRGSE--LHPNSV 1063

>YG49_SCHPO (O60184) Protein C23E6.09 in chromosome II|
          Length = 1102

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
 Frame = +2

Query: 35   SDISASRSSQNH--SETRSDVNSISNISLIDRARGQQERIHQNKVIACDNTIVRGS---- 196
            + IS+++S Q+    + RS  NSISN+S  +R+     +  + +  A + +  + S    
Sbjct: 822  NSISSTKSPQHKLSDQPRSRNNSISNVSHRERSNSVSSKSRETRTSASNESDPKKSTQRD 881

Query: 197  ---QSHHDTGVYGQVHSASVIDSTKEMQEQ 277
               +  + T V G   S+S  D+ K ++ Q
Sbjct: 882  SSKKLENSTVVSGSPSSSSKSDAAKSIKPQ 911

>LAMA2_HUMAN (P24043) Laminin alpha-2 chain precursor (Laminin M chain) (Merosin|
            heavy chain)
          Length = 3110

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
 Frame = +2

Query: 8    HVDVSTIHASDISASRSSQNHSE------TRSDVNSISNISLIDRARGQQERI 148
            H+ VS    S +++  S+QNH++      T S +   +NIS++D    Q+E I
Sbjct: 2397 HIKVSYDLGSGMASVVSNQNHNDGKWKSFTLSRIQKQANISIVDIDTNQEENI 2449


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,846,228
Number of Sequences: 219361
Number of extensions: 844036
Number of successful extensions: 1802
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1802
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2851757076
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)