ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl21c11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 58 3e-05
2dbj|AP004728.3| Oryza sativa (japonica cultivar-group) genomic D... 58 3e-05
3dbj|AK120595.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 3e-05
4gb|AC131743.3| Mus musculus BAC clone RP23-68K21 from chromosome... 48 0.025
5dbj|AK134899.1| Mus musculus adult male olfactory brain cDNA, RI... 48 0.025
6dbj|AK148903.1| Mus musculus 2 days neonate sympathetic ganglion... 48 0.025
7dbj|AK088176.1| Mus musculus 2 days neonate thymus thymic cells ... 48 0.025
8gb|AC154809.2| Mus musculus BAC clone RP24-528G7 from chromosome... 44 0.39
9gb|U41013.1| Caenorhabditis elegans cosmid T06C10, complete sequ... 44 0.39
10emb|AL512452.7| Human DNA sequence from clone RP11-520F22 on chr... 42 1.6
11gb|AC016383.11| Homo sapiens chromosome 18, clone RP11-25O3, com... 42 1.6
12ref|XM_604716.2| PREDICTED: Bos taurus similar to egf-like modul... 40 6.1
13gb|AC022433.5|AC022433 Homo sapiens chromosome 5 clone CTD-3066J... 40 6.1
14gb|AC090059.9| Homo sapiens 12 BAC RP11-604C20 (Roswell Park Can... 40 6.1
15emb|AL670943.14| Mouse DNA sequence from clone RP23-233G6 on chr... 40 6.1

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 44/49 (89%)
 Strand = Plus / Plus

                                                                 
Query: 304      caatgctgctacaacaagtacttcagaaagccatatccaaacaagaata 352
                ||||||||||| | |||||||||| ||||| ||||||||| ||||||||
Sbjct: 16636288 caatgctgctatagcaagtacttctgaaagtcatatccaagcaagaata 16636336



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 67/80 (83%)
 Strand = Plus / Plus

                                                                            
Query: 5        acacatgttgatgtttccacgattcatgctagtgatatctctgcctctaggagctcacaa 64
                |||||||||||||||||||   ||| ||| |||||||| |||| ||| ||||  ||||||
Sbjct: 16636037 acacatgttgatgtttccaaagttcgtgcgagtgatatttctgtctcaaggaattcacaa 16636096

                                    
Query: 65       aatcattctgaaactagatc 84
                ||   |||||||||||||||
Sbjct: 16636097 aaggcttctgaaactagatc 16636116



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>dbj|AP004728.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0583E12
          Length = 152449

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 44/49 (89%)
 Strand = Plus / Plus

                                                               
Query: 304    caatgctgctacaacaagtacttcagaaagccatatccaaacaagaata 352
              ||||||||||| | |||||||||| ||||| ||||||||| ||||||||
Sbjct: 132268 caatgctgctatagcaagtacttctgaaagtcatatccaagcaagaata 132316



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 67/80 (83%)
 Strand = Plus / Plus

                                                                          
Query: 5      acacatgttgatgtttccacgattcatgctagtgatatctctgcctctaggagctcacaa 64
              |||||||||||||||||||   ||| ||| |||||||| |||| ||| ||||  ||||||
Sbjct: 132017 acacatgttgatgtttccaaagttcgtgcgagtgatatttctgtctcaaggaattcacaa 132076

                                  
Query: 65     aatcattctgaaactagatc 84
              ||   |||||||||||||||
Sbjct: 132077 aaggcttctgaaactagatc 132096



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>dbj|AK120595.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013147K17, full
            insert sequence
          Length = 5013

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 44/49 (89%)
 Strand = Plus / Plus

                                                             
Query: 304  caatgctgctacaacaagtacttcagaaagccatatccaaacaagaata 352
            ||||||||||| | |||||||||| ||||| ||||||||| ||||||||
Sbjct: 2431 caatgctgctatagcaagtacttctgaaagtcatatccaagcaagaata 2479



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 64/77 (83%)
 Strand = Plus / Plus

                                                                        
Query: 8    catgttgatgtttccacgattcatgctagtgatatctctgcctctaggagctcacaaaat 67
            ||||||||||||||||   ||| ||| |||||||| |||| ||| ||||  |||||||| 
Sbjct: 2183 catgttgatgtttccaaagttcgtgcgagtgatatttctgtctcaaggaattcacaaaag 2242

                             
Query: 68   cattctgaaactagatc 84
              |||||||||||||||
Sbjct: 2243 gcttctgaaactagatc 2259



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>gb|AC131743.3| Mus musculus BAC clone RP23-68K21 from chromosome 13, complete sequence
          Length = 235930

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                          
Query: 188    aggggttcacagagtcatcatgacactg 215
              |||||||||||||| |||||||||||||
Sbjct: 184023 aggggttcacagagacatcatgacactg 184050



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>dbj|AK134899.1| Mus musculus adult male olfactory brain cDNA, RIKEN full-length
           enriched library, clone:6430512A06
           product:unclassifiable, full insert sequence
          Length = 1393

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 188 aggggttcacagagtcatcatgacactg 215
           |||||||||||||| |||||||||||||
Sbjct: 901 aggggttcacagagacatcatgacactg 874



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>dbj|AK148903.1| Mus musculus 2 days neonate sympathetic ganglion cDNA, RIKEN
            full-length enriched library, clone:7120461F20
            product:unclassifiable, full insert sequence
          Length = 1459

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 188  aggggttcacagagtcatcatgacactg 215
            |||||||||||||| |||||||||||||
Sbjct: 1383 aggggttcacagagacatcatgacactg 1356



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>dbj|AK088176.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN
            full-length enriched library, clone:E430005I09
            product:inferred: hypothetical protein KIAA0217 {Homo
            sapiens}, full insert sequence
          Length = 2434

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 188  aggggttcacagagtcatcatgacactg 215
            |||||||||||||| |||||||||||||
Sbjct: 2354 aggggttcacagagacatcatgacactg 2327



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>gb|AC154809.2| Mus musculus BAC clone RP24-528G7 from chromosome 16, complete sequence
          Length = 191524

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 400   gaaggaacaaattgatcttact 421
             ||||||||||||||||||||||
Sbjct: 54960 gaaggaacaaattgatcttact 54981



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>gb|U41013.1| Caenorhabditis elegans cosmid T06C10, complete sequence
          Length = 36143

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 408   aaattgatcttactaagatcca 429
             ||||||||||||||||||||||
Sbjct: 11573 aaattgatcttactaagatcca 11594



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>emb|AL512452.7| Human DNA sequence from clone RP11-520F22 on chromosome 13, complete
             sequence
          Length = 141913

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 372   cctcatctgtaaacactgtta 392
             |||||||||||||||||||||
Sbjct: 81802 cctcatctgtaaacactgtta 81782



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>gb|AC016383.11| Homo sapiens chromosome 18, clone RP11-25O3, complete sequence
          Length = 178624

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 435    gtgacactgcgggtgttagca 455
              |||||||||||||||||||||
Sbjct: 110746 gtgacactgcgggtgttagca 110766



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>ref|XM_604716.2| PREDICTED: Bos taurus similar to egf-like module-containing
           mucin-like receptor 3 isoform a (LOC526347), mRNA
          Length = 2046

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 252 acagcacaaaagagatgcaa 271
           ||||||||||||||||||||
Sbjct: 518 acagcacaaaagagatgcaa 537



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>gb|AC022433.5|AC022433 Homo sapiens chromosome 5 clone CTD-3066J14, complete sequence
          Length = 171668

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 59     tcacaaaatcattctgaaactaga 82
              |||| |||||||||||||||||||
Sbjct: 114160 tcactaaatcattctgaaactaga 114183



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>gb|AC090059.9| Homo sapiens 12 BAC RP11-604C20 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 130125

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 145    aatccatcaaaacaaggtcattgc 168
              |||||||||||| |||||||||||
Sbjct: 124174 aatccatcaaaaaaaggtcattgc 124197



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>emb|AL670943.14| Mouse DNA sequence from clone RP23-233G6 on chromosome X, complete
             sequence
          Length = 197148

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 315   caacaagtacttcagaaagc 334
             ||||||||||||||||||||
Sbjct: 32277 caacaagtacttcagaaagc 32296


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,831,797
Number of Sequences: 3902068
Number of extensions: 3831797
Number of successful extensions: 77800
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77759
Number of HSP's gapped (non-prelim): 41
length of query: 455
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 433
effective length of database: 17,147,199,772
effective search space: 7424737501276
effective search space used: 7424737501276
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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