Clone Name | bastl21c11 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 58.0 bits (29), Expect = 3e-05 Identities = 44/49 (89%) Strand = Plus / Plus Query: 304 caatgctgctacaacaagtacttcagaaagccatatccaaacaagaata 352 ||||||||||| | |||||||||| ||||| ||||||||| |||||||| Sbjct: 16636288 caatgctgctatagcaagtacttctgaaagtcatatccaagcaagaata 16636336 Score = 56.0 bits (28), Expect = 1e-04 Identities = 67/80 (83%) Strand = Plus / Plus Query: 5 acacatgttgatgtttccacgattcatgctagtgatatctctgcctctaggagctcacaa 64 ||||||||||||||||||| ||| ||| |||||||| |||| ||| |||| |||||| Sbjct: 16636037 acacatgttgatgtttccaaagttcgtgcgagtgatatttctgtctcaaggaattcacaa 16636096 Query: 65 aatcattctgaaactagatc 84 || ||||||||||||||| Sbjct: 16636097 aaggcttctgaaactagatc 16636116
>dbj|AP004728.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0583E12 Length = 152449 Score = 58.0 bits (29), Expect = 3e-05 Identities = 44/49 (89%) Strand = Plus / Plus Query: 304 caatgctgctacaacaagtacttcagaaagccatatccaaacaagaata 352 ||||||||||| | |||||||||| ||||| ||||||||| |||||||| Sbjct: 132268 caatgctgctatagcaagtacttctgaaagtcatatccaagcaagaata 132316 Score = 56.0 bits (28), Expect = 1e-04 Identities = 67/80 (83%) Strand = Plus / Plus Query: 5 acacatgttgatgtttccacgattcatgctagtgatatctctgcctctaggagctcacaa 64 ||||||||||||||||||| ||| ||| |||||||| |||| ||| |||| |||||| Sbjct: 132017 acacatgttgatgtttccaaagttcgtgcgagtgatatttctgtctcaaggaattcacaa 132076 Query: 65 aatcattctgaaactagatc 84 || ||||||||||||||| Sbjct: 132077 aaggcttctgaaactagatc 132096
>dbj|AK120595.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013147K17, full insert sequence Length = 5013 Score = 58.0 bits (29), Expect = 3e-05 Identities = 44/49 (89%) Strand = Plus / Plus Query: 304 caatgctgctacaacaagtacttcagaaagccatatccaaacaagaata 352 ||||||||||| | |||||||||| ||||| ||||||||| |||||||| Sbjct: 2431 caatgctgctatagcaagtacttctgaaagtcatatccaagcaagaata 2479 Score = 50.1 bits (25), Expect = 0.006 Identities = 64/77 (83%) Strand = Plus / Plus Query: 8 catgttgatgtttccacgattcatgctagtgatatctctgcctctaggagctcacaaaat 67 |||||||||||||||| ||| ||| |||||||| |||| ||| |||| |||||||| Sbjct: 2183 catgttgatgtttccaaagttcgtgcgagtgatatttctgtctcaaggaattcacaaaag 2242 Query: 68 cattctgaaactagatc 84 ||||||||||||||| Sbjct: 2243 gcttctgaaactagatc 2259
>gb|AC131743.3| Mus musculus BAC clone RP23-68K21 from chromosome 13, complete sequence Length = 235930 Score = 48.1 bits (24), Expect = 0.025 Identities = 27/28 (96%) Strand = Plus / Plus Query: 188 aggggttcacagagtcatcatgacactg 215 |||||||||||||| ||||||||||||| Sbjct: 184023 aggggttcacagagacatcatgacactg 184050
>dbj|AK134899.1| Mus musculus adult male olfactory brain cDNA, RIKEN full-length enriched library, clone:6430512A06 product:unclassifiable, full insert sequence Length = 1393 Score = 48.1 bits (24), Expect = 0.025 Identities = 27/28 (96%) Strand = Plus / Minus Query: 188 aggggttcacagagtcatcatgacactg 215 |||||||||||||| ||||||||||||| Sbjct: 901 aggggttcacagagacatcatgacactg 874
>dbj|AK148903.1| Mus musculus 2 days neonate sympathetic ganglion cDNA, RIKEN full-length enriched library, clone:7120461F20 product:unclassifiable, full insert sequence Length = 1459 Score = 48.1 bits (24), Expect = 0.025 Identities = 27/28 (96%) Strand = Plus / Minus Query: 188 aggggttcacagagtcatcatgacactg 215 |||||||||||||| ||||||||||||| Sbjct: 1383 aggggttcacagagacatcatgacactg 1356
>dbj|AK088176.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:E430005I09 product:inferred: hypothetical protein KIAA0217 {Homo sapiens}, full insert sequence Length = 2434 Score = 48.1 bits (24), Expect = 0.025 Identities = 27/28 (96%) Strand = Plus / Minus Query: 188 aggggttcacagagtcatcatgacactg 215 |||||||||||||| ||||||||||||| Sbjct: 2354 aggggttcacagagacatcatgacactg 2327
>gb|AC154809.2| Mus musculus BAC clone RP24-528G7 from chromosome 16, complete sequence Length = 191524 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 400 gaaggaacaaattgatcttact 421 |||||||||||||||||||||| Sbjct: 54960 gaaggaacaaattgatcttact 54981
>gb|U41013.1| Caenorhabditis elegans cosmid T06C10, complete sequence Length = 36143 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 408 aaattgatcttactaagatcca 429 |||||||||||||||||||||| Sbjct: 11573 aaattgatcttactaagatcca 11594
>emb|AL512452.7| Human DNA sequence from clone RP11-520F22 on chromosome 13, complete sequence Length = 141913 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 372 cctcatctgtaaacactgtta 392 ||||||||||||||||||||| Sbjct: 81802 cctcatctgtaaacactgtta 81782
>gb|AC016383.11| Homo sapiens chromosome 18, clone RP11-25O3, complete sequence Length = 178624 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 435 gtgacactgcgggtgttagca 455 ||||||||||||||||||||| Sbjct: 110746 gtgacactgcgggtgttagca 110766
>ref|XM_604716.2| PREDICTED: Bos taurus similar to egf-like module-containing mucin-like receptor 3 isoform a (LOC526347), mRNA Length = 2046 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 252 acagcacaaaagagatgcaa 271 |||||||||||||||||||| Sbjct: 518 acagcacaaaagagatgcaa 537
>gb|AC022433.5|AC022433 Homo sapiens chromosome 5 clone CTD-3066J14, complete sequence Length = 171668 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 59 tcacaaaatcattctgaaactaga 82 |||| ||||||||||||||||||| Sbjct: 114160 tcactaaatcattctgaaactaga 114183
>gb|AC090059.9| Homo sapiens 12 BAC RP11-604C20 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 130125 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 145 aatccatcaaaacaaggtcattgc 168 |||||||||||| ||||||||||| Sbjct: 124174 aatccatcaaaaaaaggtcattgc 124197
>emb|AL670943.14| Mouse DNA sequence from clone RP23-233G6 on chromosome X, complete sequence Length = 197148 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 315 caacaagtacttcagaaagc 334 |||||||||||||||||||| Sbjct: 32277 caacaagtacttcagaaagc 32296 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,831,797 Number of Sequences: 3902068 Number of extensions: 3831797 Number of successful extensions: 77800 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 15 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 77759 Number of HSP's gapped (non-prelim): 41 length of query: 455 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 433 effective length of database: 17,147,199,772 effective search space: 7424737501276 effective search space used: 7424737501276 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)