ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl21c05 |
|---|---|
| Clone Library Name | barley_pub |
>Y2162_ARATH (O22224) Protein At2g41620| Length = 861 Score = 183 bits (464), Expect = 2e-46 Identities = 93/116 (80%), Positives = 107/116 (92%) Frame = +1 Query: 118 WSELLNTSTKLLEQAALTPHFPALQRNLDQLEVLSTKLKAKTIRAEAPSQSLSATRLLAR 297 W++LL++S+KLLEQAA + FP LQRNLDQLE LS KLKAKT+R EAPSQS++ATRLLAR Sbjct: 10 WTDLLHSSSKLLEQAAPSSQFPPLQRNLDQLEALSKKLKAKTLRNEAPSQSIAATRLLAR 69 Query: 298 EGINAEQLTRDLKSFELKTTFEDVFPSEATSVEEYLQQLHEMAIVSSIQGAQKDNL 465 EGINAEQL RDLKSFELKTTFEDVFP+EATSVEEYLQQ+HEMA+VS+IQ AQKDN+ Sbjct: 70 EGINAEQLARDLKSFELKTTFEDVFPAEATSVEEYLQQVHEMAMVSAIQEAQKDNV 125
>NUP93_XENLA (Q7ZX96) Nuclear pore complex protein Nup93 (Nucleoporin Nup93) (93| kDa nucleoporin) (An4a) Length = 820 Score = 57.0 bits (136), Expect = 2e-08 Identities = 30/114 (26%), Positives = 65/114 (57%), Gaps = 1/114 (0%) Frame = +1 Query: 118 WSELLNTSTKLLEQAALTPHFPALQRNLDQLEVLSTKLKAKTI-RAEAPSQSLSATRLLA 294 + ELL + +L + P ++RNL +++ +L++KT+ R S ++ A+ LL Sbjct: 6 FGELLQQAEQLAAETEGVTELPHVERNLQEIQQAGERLRSKTMTRTSQESANVKASVLLG 65 Query: 295 REGINAEQLTRDLKSFELKTTFEDVFPSEATSVEEYLQQLHEMAIVSSIQGAQK 456 G++ +++ L+S TTFE + P + T ++ +L+ + A++S+I+ ++K Sbjct: 66 SRGLDISHISQRLESLSAATTFEPLEPVKDTDIQGFLKNEKDNALLSAIEESRK 119
>NUP93_MOUSE (Q8BJ71) Nuclear pore complex protein Nup93 (Nucleoporin Nup93) (93| kDa nucleoporin) (CBP-interacting protein 4) Length = 819 Score = 54.3 bits (129), Expect = 2e-07 Identities = 28/114 (24%), Positives = 64/114 (56%), Gaps = 1/114 (0%) Frame = +1 Query: 118 WSELLNTSTKLLEQAALTPHFPALQRNLDQLEVLSTKLKAKTI-RAEAPSQSLSATRLLA 294 + ELL + +L + P ++RNL +++ +L+++T+ R + + A+ LL Sbjct: 6 FGELLQQAEQLAAETEGISELPHVERNLQEIQQAGERLRSRTLTRTSQETADVKASVLLG 65 Query: 295 REGINAEQLTRDLKSFELKTTFEDVFPSEATSVEEYLQQLHEMAIVSSIQGAQK 456 G++ +++ L+S TTFE + P + T ++ +L+ + A++S+I+ ++K Sbjct: 66 SRGLDISHISQRLESLSAATTFEPLEPVKDTDIQGFLKNEKDNALLSAIEESRK 119
>NUP93_HUMAN (Q8N1F7) Nuclear pore complex protein Nup93 (Nucleoporin Nup93) (93| kDa nucleoporin) Length = 819 Score = 54.3 bits (129), Expect = 2e-07 Identities = 28/114 (24%), Positives = 64/114 (56%), Gaps = 1/114 (0%) Frame = +1 Query: 118 WSELLNTSTKLLEQAALTPHFPALQRNLDQLEVLSTKLKAKTI-RAEAPSQSLSATRLLA 294 + ELL + +L + P ++RNL +++ +L+++T+ R + + A+ LL Sbjct: 6 FGELLQQAEQLAAETEGISELPHVERNLQEIQQAGERLRSRTLTRTSQETADVKASVLLG 65 Query: 295 REGINAEQLTRDLKSFELKTTFEDVFPSEATSVEEYLQQLHEMAIVSSIQGAQK 456 G++ +++ L+S TTFE + P + T ++ +L+ + A++S+I+ ++K Sbjct: 66 SRGLDISHISQRLESLSAATTFEPLEPVKDTDIQGFLKNEKDNALLSAIEESRK 119
>NUP93_BRARE (Q7ZU29) Nuclear pore complex protein Nup93 (Nucleoporin Nup93) (93| kDa nucleoporin) (Dead eye protein) Length = 820 Score = 53.9 bits (128), Expect = 2e-07 Identities = 27/114 (23%), Positives = 64/114 (56%), Gaps = 1/114 (0%) Frame = +1 Query: 118 WSELLNTSTKLLEQAALTPHFPALQRNLDQLEVLSTKLKAKTI-RAEAPSQSLSATRLLA 294 + ELL + +L + P ++RNL +++ +L+++T+ R + + A+ LL Sbjct: 6 FGELLQQAEQLAAETEAVSELPHVERNLQEIQQAGERLRSRTLTRTSQDTADVKASILLG 65 Query: 295 REGINAEQLTRDLKSFELKTTFEDVFPSEATSVEEYLQQLHEMAIVSSIQGAQK 456 G++ +++ L+S TTFE + P + T ++ +L+ + A++S+I+ +++ Sbjct: 66 SRGLDIFHISQRLESLSAATTFEPLEPVKDTDIQGFLKNERDNALLSAIEESRR 119
>NP106_SCHPO (O14310) Nucleoporin npp106 (Nuclear pore protein npp106)| Length = 933 Score = 38.1 bits (87), Expect = 0.011 Identities = 26/101 (25%), Positives = 50/101 (49%), Gaps = 1/101 (0%) Frame = +1 Query: 166 LTPHFPALQRNLDQLEVLSTKLKAKTIRAEAPSQSLSATRLLAREGINAEQLTRDLKSFE 345 L P P +Q L+QLE + L++K + A LLA G+NAEQ + + S Sbjct: 40 LEPQVPVIQYGLNQLEEKARNLESKVLLTR--DGDTKAHYLLAESGMNAEQTRQKIYSIH 97 Query: 346 LKTTFEDVFPSEATSVEEYLQQLHE-MAIVSSIQGAQKDNL 465 + + ++ + + + E+ +L+ +V+SI+ + N+ Sbjct: 98 IHSPWDQLELDKKSLYEQPHTKLYNGQNVVASIENGYQSNV 138
>ARGC_CORGL (Q59279) N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)| (AGPR) (N-acetyl-glutamate semialdehyde dehydrogenase) (NAGSA dehydrogenase) Length = 347 Score = 33.1 bits (74), Expect = 0.36 Identities = 19/70 (27%), Positives = 30/70 (42%) Frame = +1 Query: 175 HFPALQRNLDQLEVLSTKLKAKTIRAEAPSQSLSATRLLAREGINAEQLTRDLKSFELKT 354 H P + +NL ++ K+ + A P L+ +EG+ AEQ + F + Sbjct: 212 HTPEIAQNLGEVSDKPVKVSFTPVLAPLPRGILTTATAPLKEGVTAEQARAVYEEFYAQE 271 Query: 355 TFEDVFPSEA 384 TF V P A Sbjct: 272 TFVHVLPEGA 281
>TSKS_HUMAN (Q9UJT2) Testis-specific serine kinase substrate (Testis-specific| kinase substrate) (STK22 substrate 1) Length = 592 Score = 31.6 bits (70), Expect = 1.1 Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 2/90 (2%) Frame = +1 Query: 151 LEQAALTPHFPALQRNLDQLEVLSTKLKAKTIRAEAPSQSLSATRLLAREGINAEQ--LT 324 ++Q LTP P+ QR ++ L + AK +RAEA S +L RL E + A+ LT Sbjct: 479 VKQRGLTPACPSCQRLHKKILELERQALAKHVRAEALSSTL---RLAQDEALRAKNLLLT 535 Query: 325 RDLKSFELKTTFEDVFPSEATSVEEYLQQL 414 +K E T D + S+ ++L L Sbjct: 536 DKMKPEEKMATL-DHLHLKMCSLHDHLSNL 564
>UBP24_HUMAN (Q9UPU5) Ubiquitin carboxyl-terminal hydrolase 24 (EC 3.1.2.15)| (Ubiquitin thioesterase 24) (Ubiquitin-specific-processing protease 24) (Deubiquitinating enzyme 24) Length = 1870 Score = 30.8 bits (68), Expect = 1.8 Identities = 27/91 (29%), Positives = 45/91 (49%) Frame = +1 Query: 166 LTPHFPALQRNLDQLEVLSTKLKAKTIRAEAPSQSLSATRLLAREGINAEQLTRDLKSFE 345 L P PA+Q LDQL+ L K KT+ +E+ SQS + L +++Q + S Sbjct: 357 LIPTDPAIQEALDQLDSLGRK---KTLLSESSSQSSKSPSL------SSKQQHQPSASSI 407 Query: 346 LKTTFEDVFPSEATSVEEYLQQLHEMAIVSS 438 L++ F P +T + L+ + ++SS Sbjct: 408 LESLFRSFAPGMST-----FRVLYNLEVLSS 433
>DRL20_ARATH (Q9SH22) Putative disease resistance protein At1g63360| Length = 884 Score = 30.4 bits (67), Expect = 2.3 Identities = 19/67 (28%), Positives = 34/67 (50%) Frame = +1 Query: 199 LDQLEVLSTKLKAKTIRAEAPSQSLSATRLLAREGINAEQLTRDLKSFELKTTFEDVFPS 378 L+ LE+L+T + + + + + LS +RLL G + L R L+S + T F Sbjct: 663 LEHLEILTTTIDPRAKQFLSSHRLLSHSRLLEIYGSSVSSLNRHLESLSVSTDKLREFQI 722 Query: 379 EATSVEE 399 ++ S+ E Sbjct: 723 KSCSISE 729
>ILVH_MYCLE (O33113) Acetolactate synthase small subunit (EC 2.2.1.6) (AHAS)| (Acetohydroxy-acid synthase small subunit) (ALS) Length = 169 Score = 30.0 bits (66), Expect = 3.1 Identities = 17/70 (24%), Positives = 29/70 (41%) Frame = +1 Query: 253 EAPSQSLSATRLLAREGINAEQLTRDLKSFELKTTFEDVFPSEATSVEEYLQQLHEMAIV 432 + P L +R G N E L + + V +E T +E+ +QLH++ V Sbjct: 15 DTPGVLARVAALFSRRGFNIESLAVGATECKTMSRMTIVVSAEETPLEQVTKQLHKLINV 74 Query: 433 SSIQGAQKDN 462 + + DN Sbjct: 75 IKVVEQEADN 84
>AMC1_ORYSA (P27940) Alpha-amylase isozyme C (EC 3.2.1.1) (1,4-alpha-D-glucan| glucanohydrolase) (Isozyme 1B) Length = 348 Score = 30.0 bits (66), Expect = 3.1 Identities = 12/24 (50%), Positives = 14/24 (58%) Frame = -1 Query: 304 SPRAPATWWRRATVTAPRRGSSWP 233 SPRA W+R+T P R S WP Sbjct: 192 SPRATPPTWQRSTSMPPSRASPWP 215
>UAFA_STAS1 (Q4A0V8) Uro-adherence factor A precursor| Length = 2316 Score = 29.3 bits (64), Expect = 5.2 Identities = 26/111 (23%), Positives = 50/111 (45%) Frame = +1 Query: 121 SELLNTSTKLLEQAALTPHFPALQRNLDQLEVLSTKLKAKTIRAEAPSQSLSATRLLARE 300 SE ++ S L E +++ ++ + E LST T + + S+SLSA+ L+ Sbjct: 1846 SESISASESLSESESISA-----SESISESESLSTSESLSTSESLSESESLSASESLSES 1900 Query: 301 GINAEQLTRDLKSFELKTTFEDVFPSEATSVEEYLQQLHEMAIVSSIQGAQ 453 +E + L E + E + SE+ S E L + ++ S+ ++ Sbjct: 1901 ESLSE--SESLSESESLSESESLSASESLSASESLSESESLSESESLSESE 1949
>YG1F_YEAST (P53214) Hypothetical 57.5 kDa protein in VMA7-RPS25A intergenic| region Length = 551 Score = 29.3 bits (64), Expect = 5.2 Identities = 24/75 (32%), Positives = 41/75 (54%) Frame = -3 Query: 431 TIAIS*SCCRYSSTEVASDGKTSSKVVLSSNDLRSLVSCSALIPSRASNLVAESDCDGAS 252 ++ +S S SS+EV S +SS + S+ +++S S+ +P+ VA + AS Sbjct: 107 SMQVSSSSTSSSSSEVTSSSSSSS--ISPSSSSSTIISSSSSLPTFT---VASTSSTVAS 161 Query: 251 ARIVLALSLVESTSS 207 + + + SLV STSS Sbjct: 162 STLSTSSSLVISTSS 176
>DNAS1_CHICK (Q9YGI5) Deoxyribonuclease-1 precursor (EC 3.1.21.1)| (Deoxyribonuclease I) (DNase I) Length = 282 Score = 28.5 bits (62), Expect = 8.9 Identities = 13/24 (54%), Positives = 14/24 (58%) Frame = -3 Query: 335 LRSLVSCSALIPSRASNLVAESDC 264 LRSL SC LIP A V +DC Sbjct: 206 LRSLSSCEWLIPDSADTTVTSTDC 229
>PHZI_PSEFL (Q51785) Autoinducer synthesis protein phzI| Length = 196 Score = 28.5 bits (62), Expect = 8.9 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 3/42 (7%) Frame = -3 Query: 362 SKVVLSSNDLRSLVSCSALIPSRASNL---VAESDCDGASAR 246 ++ +L+ N+ RS+V C+ LIP+ NL V C GA R Sbjct: 54 ARYLLAFNEHRSIVGCARLIPTTFPNLLEGVFSHACAGAPPR 95 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.311 0.125 0.330 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,040,401 Number of Sequences: 219361 Number of extensions: 748485 Number of successful extensions: 1922 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 1910 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1922 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 3026354448 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits)
