ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl21c04 |
|---|---|
| Clone Library Name | barley_pub |
>RP1L1_HUMAN (Q8IWN7) Retinitis pigmentosa 1-like 1 protein| Length = 2480 Score = 30.0 bits (66), Expect = 1.4 Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 12/50 (24%) Frame = +1 Query: 214 PQEEGALQNSSEGKIQAPELK------------PLAGSQAVPKTEGVSTP 327 P+ EG Q SEG I+APE + P A +A P+ EGV TP Sbjct: 2263 PEAEGEAQPESEG-IEAPEAEGEAQPELEGVEAPEAEEEAQPEPEGVETP 2311
>AEX3_CAEEL (O02626) Regulator of presynaptic activity aex-3 (Aboc, expulsion| defective protein 3) Length = 1409 Score = 29.6 bits (65), Expect = 1.8 Identities = 24/58 (41%), Positives = 25/58 (43%) Frame = +1 Query: 166 PVTPRELGFTPFRNPPPQEEGALQNSSEGKIQAPELKPLAGSQAVPKTEGVSTPISLV 339 PV PRE P RNPPP GA EG P L P V T TP +LV Sbjct: 967 PVPPREAPPIPKRNPPPL--GAPPKVPEGARAPPPLPP---RPKVKTTAVDETPQNLV 1019
>PSC_DROME (P35820) Polycomb group protein Psc (Protein posterior sex combs)| Length = 1601 Score = 29.6 bits (65), Expect = 1.8 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 6/66 (9%) Frame = +1 Query: 148 DLARRLPVTPRELGFTPFRNP------PPQEEGALQNSSEGKIQAPELKPLAGSQAVPKT 309 +LA +LP +GF P +NP PP ++ N+ Q+ + K + G Q+ P Sbjct: 1311 ELAPKLPTLAPFVGFNPLQNPAAGKKVPPSKKS--PNAGAAAHQSGQQKLVNGGQSQPAQ 1368 Query: 310 EGVSTP 327 + S P Sbjct: 1369 QKTSPP 1374
>B3A2_RABIT (P48746) Anion exchange protein 2 (Non-erythroid band 3-like| protein) (AE2 anion exchanger) (Solute carrier family 4 member 2) (B3RP) Length = 1237 Score = 29.3 bits (64), Expect = 2.4 Identities = 19/66 (28%), Positives = 27/66 (40%) Frame = +1 Query: 172 TPRELGFTPFRNPPPQEEGALQNSSEGKIQAPELKPLAGSQAVPKTEGVSTPISLVKSIH 351 TP+ G P R P GA EG+ E G++A + STP S+ + Sbjct: 98 TPQGPGRKPRRRPGASPTGATPTIEEGEEDEEEANEAEGARAPTEPSPASTPSSVQFFLQ 157 Query: 352 AQLGAQ 369 GA+ Sbjct: 158 EDEGAE 163
>B3A2_HUMAN (P04920) Anion exchange protein 2 (Non-erythroid band 3-like| protein) (AE2 anion exchanger) (Solute carrier family 4 member 2) (BND3L) Length = 1241 Score = 28.9 bits (63), Expect = 3.1 Identities = 17/55 (30%), Positives = 24/55 (43%) Frame = +1 Query: 172 TPRELGFTPFRNPPPQEEGALQNSSEGKIQAPELKPLAGSQAVPKTEGVSTPISL 336 TP+ G P R P G EG+ E G++A+ + VSTP S+ Sbjct: 98 TPQGPGRKPRRRPGASPTGETPTIEEGEEDEDEASEAEGARALTQPSPVSTPSSV 152
>SMO_MOUSE (P56726) Smoothened homolog precursor (SMO)| Length = 793 Score = 28.5 bits (62), Expect = 4.0 Identities = 17/46 (36%), Positives = 25/46 (54%) Frame = +1 Query: 151 LARRLPVTPRELGFTPFRNPPPQEEGALQNSSEGKIQAPELKPLAG 288 +ARR + P+++ TP P P EE A E +I +PEL+ G Sbjct: 630 VARRGAILPQDVSVTPVATPVPPEEQANMWLVEAEI-SPELEKRLG 674
>MSH5_YEAST (Q12175) MutS protein homolog 5| Length = 901 Score = 28.5 bits (62), Expect = 4.0 Identities = 12/16 (75%), Positives = 12/16 (75%) Frame = -1 Query: 327 RCADALGFWNSLRSGK 280 RC DA GF N LRSGK Sbjct: 337 RCPDAFGFINQLRSGK 352
>KRH2_DROME (Q9V447) Protein Kr-h2| Length = 276 Score = 28.1 bits (61), Expect = 5.3 Identities = 15/31 (48%), Positives = 17/31 (54%) Frame = +1 Query: 211 PPQEEGALQNSSEGKIQAPELKPLAGSQAVP 303 PP+ EGA NSSE Q E + SQ VP Sbjct: 8 PPRSEGAQTNSSERSSQQQEQPQQSQSQNVP 38
>SMO_HUMAN (Q99835) Smoothened homolog precursor (SMO) (Gx protein)| Length = 787 Score = 28.1 bits (61), Expect = 5.3 Identities = 17/46 (36%), Positives = 25/46 (54%) Frame = +1 Query: 151 LARRLPVTPRELGFTPFRNPPPQEEGALQNSSEGKIQAPELKPLAG 288 +ARR + P+++ TP P P EE A E +I +PEL+ G Sbjct: 626 VARRGAILPQDISVTPVATPVPPEEQANLWLVEAEI-SPELQKRLG 670
>SWR1_GIBZE (Q4IAK7) Helicase SWR1 (EC 3.6.1.-)| Length = 1691 Score = 27.7 bits (60), Expect = 6.9 Identities = 13/47 (27%), Positives = 22/47 (46%) Frame = +1 Query: 181 ELGFTPFRNPPPQEEGALQNSSEGKIQAPELKPLAGSQAVPKTEGVS 321 E+ +P P E GAL+ S++ ++ E P A +G+S Sbjct: 662 EMSLIQMPDPEPHESGALEKSTKEAVEEKEQIPAAMQDVAAGQDGLS 708
>SMO_RAT (P97698) Smoothened homolog precursor (SMO)| Length = 793 Score = 27.7 bits (60), Expect = 6.9 Identities = 17/46 (36%), Positives = 25/46 (54%) Frame = +1 Query: 151 LARRLPVTPRELGFTPFRNPPPQEEGALQNSSEGKIQAPELKPLAG 288 +ARR + P+++ TP P P EE A E +I +PEL+ G Sbjct: 630 VARRGAILPQDVSVTPVATPVPPEEQANLWLVEAEI-SPELEKRLG 674
>SFR14_MOUSE (Q8CH09) Putative splicing factor, arginine/serine-rich 14| (Arginine/serine-rich splicing factor 14) Length = 1067 Score = 27.7 bits (60), Expect = 6.9 Identities = 14/43 (32%), Positives = 22/43 (51%) Frame = +1 Query: 208 PPPQEEGALQNSSEGKIQAPELKPLAGSQAVPKTEGVSTPISL 336 P +EE ++ EG + L+P AG+ P +EG S S+ Sbjct: 867 PEEEEEDEEESEDEGGEETSTLRPQAGAAKCPGSEGSSPTDSI 909
>ADEC1_BRAJA (Q89QG3) Adenine deaminase 1 (EC 3.5.4.2) (Adenase 1) (Adenine| aminase 1) Length = 600 Score = 27.3 bits (59), Expect = 9.0 Identities = 14/53 (26%), Positives = 29/53 (54%) Frame = +1 Query: 217 QEEGALQNSSEGKIQAPELKPLAGSQAVPKTEGVSTPISLVKSIHAQLGAQIP 375 + +GA+ ++GK++A P+AG + + V+ + ++K A+ G IP Sbjct: 513 EHQGAVCVVADGKVRALVPLPIAGLLSDKRVTEVAEEVKVLKKEWAEAGCTIP 565 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.311 0.132 0.372 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 46,370,123 Number of Sequences: 219361 Number of extensions: 777919 Number of successful extensions: 1745 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 1671 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1743 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 1365190992 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits)
