>NIPA_PONPY (Q5R8V9) Nuclear-interacting partner of ALK (Nuclear-interacting|
           partner of anaplastic lymphoma kinase) (Zinc finger
           C3HC-type protein 1)
          Length = 502

 Score = 37.0 bits (84), Expect = 0.025
 Identities = 19/60 (31%), Positives = 25/60 (41%)
 Frame = +3

Query: 282 AHSFDAAGTALDSAPSCRPWERGDLLRRLATFKPSTWDAKPKAASSLACSQRGWVNVDMD 461
           A S    G+     PS     +     R+ TF    W  KP   S L C++ GWV V+ D
Sbjct: 54  ATSQSVNGSPQAEQPSLESTSKEAFFSRVETFSSLKWAGKPPELSPLVCAKYGWVTVECD 113

>NIPA_HUMAN (Q86WB0) Nuclear-interacting partner of ALK (Nuclear-interacting|
           partner of anaplastic lymphoma kinase) (hNIPA) (Zinc
           finger C3HC-type protein 1)
          Length = 502

 Score = 36.2 bits (82), Expect = 0.043
 Identities = 19/60 (31%), Positives = 25/60 (41%)
 Frame = +3

Query: 282 AHSFDAAGTALDSAPSCRPWERGDLLRRLATFKPSTWDAKPKAASSLACSQRGWVNVDMD 461
           A S    G+     PS     +     R+ TF    W  KP   S L C++ GWV V+ D
Sbjct: 54  ATSQSVNGSPQAEQPSLESTSKEAFFSRVETFSSLKWAGKPFELSPLVCAKYGWVTVECD 113

>NIPA_MOUSE (Q80YV2) Nuclear-interacting partner of ALK (Nuclear-interacting|
           partner of anaplastic lymphoma kinase) (mNIPA) (Zinc
           finger C3HC-type protein 1)
          Length = 501

 Score = 34.3 bits (77), Expect = 0.16
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 363 RLATFKPSTWDAKPKAASSLACSQRGWVNVDMD 461
           R+ TF    W  KP   S L C++ GWV V+ D
Sbjct: 81  RVETFSSLKWAGKPPELSPLICAKYGWVTVECD 113

>NIPA_XENLA (Q6P7H4) NIPA-like protein (Zinc finger C3HC-type protein 1-like)|
          Length = 477

 Score = 32.3 bits (72), Expect = 0.62
 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
 Frame = +3

Query: 306 TALDSAPSCRPWE---RGDLLRRLATFKPSTWDAKPKAASSLACSQRGWVNVDMD 461
           TA +  P    +E   +     R+ +F    W  KP     L C++ GW N++ D
Sbjct: 52  TAFEDLPGNNSYESTSKDAFFSRVESFSSLKWAGKPPELCPLICAKYGWCNIECD 106

>MK04_RAT (Q63454) Mitogen-activated protein kinase 4 (EC 2.7.11.24)|
           (Extracellular signal-regulated kinase 4) (ERK-4) (MAP
           kinase isoform p63) (p63-MAPK) (MNK2) (Fragment)
          Length = 274

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +3

Query: 273 YGPAHSFDAAGTALDSAPSCRPWERGDLLRRLATFKPSTWDAK 401
           +  AH  +     LD+ P  R  ++ +LLR + +F  STW+ K
Sbjct: 203 FAGAHELEQMQLILDTIPVVREEDKEELLRVMPSFVSSTWEVK 245

>MK04_MOUSE (Q6P5G0) Mitogen-activated protein kinase 4 (EC 2.7.11.24)|
           (Extracellular signal-regulated kinase 4) (ERK-4)
          Length = 583

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +3

Query: 273 YGPAHSFDAAGTALDSAPSCRPWERGDLLRRLATFKPSTWDAK 401
           +  AH  +     LD+ P  R  ++ +LLR + +F  STW+ K
Sbjct: 229 FAGAHELEQMQLILDTIPVVREEDKEELLRVMPSFVSSTWEVK 271

>NIPA_XENTR (Q5M8S7) NIPA-like protein (Zinc finger C3HC-type protein 1-like)|
          Length = 478

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 363 RLATFKPSTWDAKPKAASSLACSQRGWVNVDMD 461
           R+ +F    W  KP     L C++ GW N++ D
Sbjct: 72  RVESFSSLKWAGKPSELCPLICAKYGWSNIECD 104

>MK04_HUMAN (P31152) Mitogen-activated protein kinase 4 (EC 2.7.11.24)|
           (Extracellular signal-regulated kinase 4) (ERK-4) (MAP
           kinase isoform p63) (p63-MAPK)
          Length = 557

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +3

Query: 273 YGPAHSFDAAGTALDSAPSCRPWERGDLLRRLATFKPSTWDAK 401
           +  AH  +     L++ P  R  ++ +LLR + +F  STW+ K
Sbjct: 229 FAGAHELEQMQLILETIPVIREEDKDELLRVMPSFVSSTWEVK 271

>APPA_BACSU (P42061) Oligopeptide-binding protein appA precursor|
          Length = 543

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 9/40 (22%), Positives = 22/40 (55%)
 Frame = -1

Query: 330 KMVQNPKQFQQHQSYEQAHRHVVQRVMRNQPWKPVCYPAN 211
           K++++ K     + Y + +  + Q++  +QP+  + YP N
Sbjct: 475 KLMKDAKSISDRKQYSKEYEQIYQKIAEDQPYTFLYYPNN 514


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,014,340
Number of Sequences: 219361
Number of extensions: 815629
Number of successful extensions: 2463
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2459
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 3026354448
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)