ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl21b04 |
|---|---|
| Clone Library Name | barley_pub |
>XSP1_ARATH (Q9LLL8) Xylem serine proteinase 1 precursor (EC 3.4.21.-) (AtXSP1)| (Cucumisin-like protein) Length = 749 Score = 67.8 bits (164), Expect = 2e-11 Identities = 34/93 (36%), Positives = 58/93 (62%) Frame = +1 Query: 148 SRKIYIAYLGDVKHGHPDEVVASHHDMLTTLLQSKEDSSASMVYNYKHGFSGFAAMLTAD 327 ++ YI YLGD + + +E + +H ++L++L S+E++ VY+Y F+ FAA L+ Sbjct: 34 AKDFYIIYLGD-RPDNTEETIKTHINLLSSLNISQEEAKERKVYSYTKAFNAFAAKLSPH 92 Query: 328 QATRLAEFPGVISVEPSKTYKTTTTHSWDFLGL 426 +A ++ E V+SV ++ K TT SWDF+GL Sbjct: 93 EAKKMMEMEEVVSVSRNQYRKLHTTKSWDFVGL 125
>CUCM1_CUCME (Q39547) Cucumisin precursor (EC 3.4.21.25) (Allergen Cuc m 1)| Length = 731 Score = 61.6 bits (148), Expect = 1e-09 Identities = 35/91 (38%), Positives = 52/91 (57%) Frame = +1 Query: 151 RKIYIAYLGDVKHGHPDEVVASHHDMLTTLLQSKEDSSASMVYNYKHGFSGFAAMLTADQ 330 + IYI Y+G K PD H ML ++ S + S+++ YK F+GFA LT ++ Sbjct: 31 KNIYIVYMGR-KLEDPDSAHLHHRAMLEQVVGSTF-APESVLHTYKRSFNGFAVKLTEEE 88 Query: 331 ATRLAEFPGVISVEPSKTYKTTTTHSWDFLG 423 A ++A GV+SV ++ + TT SWDFLG Sbjct: 89 AEKIASMEGVVSVFLNEMNELHTTRSWDFLG 119
>SUBL_ARATH (O65351) Subtilisin-like protease precursor (EC 3.4.21.-)| (Cucumisin-like serine protease) Length = 757 Score = 50.1 bits (118), Expect = 3e-06 Identities = 32/96 (33%), Positives = 52/96 (54%) Frame = +1 Query: 217 HHDMLTTLLQSKEDSSASMVYNYKHGFSGFAAMLTADQATRLAEFPGVISVEPSKTYKTT 396 H + + L+S DS A ++Y Y++ GF+ LT ++A L PGVISV P Y+ Sbjct: 48 HSNWYDSSLRSISDS-AELLYTYENAIHGFSTRLTQEEADSLMTQPGVISVLPEHRYELH 106 Query: 397 TTHSWDFLGLNYPSSHTPASELLKATNYGENIIIGM 504 TT + FLGL+ HT ++L ++++G+ Sbjct: 107 TTRTPLFLGLD---EHT--ADLFPEAGSYSDVVVGV 137
>CUDP_METAN (P29138) Cuticle-degrading protease precursor (EC 3.4.21.-) (PR1)| (Chymoelastase) Length = 388 Score = 34.7 bits (78), Expect = 0.15 Identities = 20/58 (34%), Positives = 28/58 (48%) Frame = +1 Query: 199 DEVVASHHDMLTTLLQSKEDSSASMVYNYKHGFSGFAAMLTADQATRLAEFPGVISVE 372 D++ D + L SK D + Y+H F GFA LT ++ L E PGV +E Sbjct: 48 DDIARIATDDTVSALTSKAD------FVYEHAFHGFAGSLTKEELKMLREHPGVDFIE 99
>BTUB_ECOL6 (Q8CVJ0) Vitamin B12 transporter btuB precursor (Cobalamin| receptor) (Outer membrane cobalamin translocator) Length = 614 Score = 30.4 bits (67), Expect = 2.8 Identities = 30/101 (29%), Positives = 41/101 (40%), Gaps = 8/101 (7%) Frame = +1 Query: 154 KIYIAYLGDVKHGHPDEVVASHHDMLTTLLQSKEDSSAS------MVYNYKHGFSGFAAM 315 K + LGD H H +VVA + T Q D S + +N+ +SGF Sbjct: 183 KTRVTLLGDYAHTHGYDVVA--YGNTGTQAQPDNDGFLSKTLYGALEHNFTDAWSGFVRG 240 Query: 316 LTADQATRLAEF--PGVISVEPSKTYKTTTTHSWDFLGLNY 432 D T + PG+ V+ K Y + SWD GL Y Sbjct: 241 YGYDNRTNYDAYYSPGLPLVDTRKLY----SQSWD-AGLRY 276
>SUBV_BACSU (P29141) Minor extracellular protease vpr precursor (EC 3.4.21.-)| Length = 806 Score = 30.4 bits (67), Expect = 2.8 Identities = 15/37 (40%), Positives = 22/37 (59%) Frame = +1 Query: 283 YKHGFSGFAAMLTADQATRLAEFPGVISVEPSKTYKT 393 Y+ FSGF+ L A++ +L V +V P+ TYKT Sbjct: 106 YEQVFSGFSMKLPANEIPKLLAVKDVKAVYPNVTYKT 142
>CDTB_ECOLI (Q46669) Cytolethal distending toxin subunit B precursor (CDT B)| Length = 269 Score = 29.6 bits (65), Expect = 4.8 Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 2/65 (3%) Frame = +2 Query: 284 TSMVSRASPLCSPQTKQQGLQSFLESSVLNRAKRTRPPPHIAGIFLGS--TTRPPTHRPV 457 T V RAS + SP Q Q L+ +V + RP P AGI G+ T H PV Sbjct: 205 TVPVRRASEIISPAAATQTSQRTLDYAVAGNSVAFRPSPLQAGIVYGARRTQISSDHFPV 264 Query: 458 SY*RQ 472 R+ Sbjct: 265 GVSRR 269
>DPOLZ_HUMAN (O60673) DNA polymerase zeta catalytic subunit (EC 2.7.7.7) (hREV3)| Length = 3130 Score = 29.3 bits (64), Expect = 6.3 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 2/67 (2%) Frame = +1 Query: 199 DEVVAS--HHDMLTTLLQSKEDSSASMVYNYKHGFSGFAAMLTADQATRLAEFPGVISVE 372 +E++A+ HD+ T+ Q S+ S V G M+ A LAEF G S+E Sbjct: 1888 EEIMATLLDHDLSETIYQEPFCSNPSDVPEKPREIGGRLLMVETRLANDLAEFEGDFSLE 1947 Query: 373 PSKTYKT 393 + +KT Sbjct: 1948 GLRLWKT 1954
>DAG_ANTMA (Q38732) DAG protein, chloroplast precursor| Length = 230 Score = 29.3 bits (64), Expect = 6.3 Identities = 14/59 (23%), Positives = 32/59 (54%) Frame = +1 Query: 199 DEVVASHHDMLTTLLQSKEDSSASMVYNYKHGFSGFAAMLTADQATRLAEFPGVISVEP 375 ++++ ++ + L T+L S E++ +M ++GF +T + + + PGV+ V P Sbjct: 104 EQMIDTYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVTEETSEKFKGLPGVLWVLP 162
>TUFT1_BOVIN (P27628) Tuftelin (Enamelin)| Length = 390 Score = 29.3 bits (64), Expect = 6.3 Identities = 28/101 (27%), Positives = 42/101 (41%) Frame = +1 Query: 193 HPDEVVASHHDMLTTLLQSKEDSSASMVYNYKHGFSGFAAMLTADQATRLAEFPGVISVE 372 HP+ A D+L LQS+ LT D+ R+A+ G Sbjct: 14 HPEGQTAGSVDVLRLTLQSE---------------------LTGDELERIAQKAG----- 47 Query: 373 PSKTYKTTTTHSWDFLGLNYPSSHTPASELLKATNYGENII 495 KTY ++HS +SH+ ASEL+++ + E II Sbjct: 48 -RKTYAMVSSHS---------TSHSLASELVESNDGHEEII 78
>BTUB_ECO57 (Q8X714) Vitamin B12 transporter btuB precursor (Cobalamin| receptor) (Outer membrane cobalamin translocator) Length = 614 Score = 29.3 bits (64), Expect = 6.3 Identities = 30/101 (29%), Positives = 40/101 (39%), Gaps = 8/101 (7%) Frame = +1 Query: 154 KIYIAYLGDVKHGHPDEVVASHHDMLTTLLQSKEDSSAS------MVYNYKHGFSGFAAM 315 K + LGD H H +VVA + T Q D S + +N+ +SGF Sbjct: 183 KTRVTLLGDYAHTHGYDVVA--YGNTGTQAQPDNDGFLSKTLYGALEHNFTDAWSGFVRG 240 Query: 316 LTADQATRLAEF--PGVISVEPSKTYKTTTTHSWDFLGLNY 432 D T + PG V+ K Y + SWD GL Y Sbjct: 241 YGYDNRTNYDAYYSPGSPLVDTRKLY----SQSWD-AGLRY 276
>FMDC_METWO (P61938) Molybdenum-containing formylmethanofuran dehydrogenase 1| subunit C (EC 1.2.99.5) (Molybdenum-containing formylmethanofuran dehydrogenase I subunit C) Length = 400 Score = 29.3 bits (64), Expect = 6.3 Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 7/76 (9%) Frame = -2 Query: 438 GRVVEPKKIPAMCGGG-------LVRFARFNTDDSRKLCKPCCLVCGEHSGEARETMLVV 280 GRV+ K I + G +++ TDD C CC+ ++ +VV Sbjct: 265 GRVITKKGIKVIYNSGSTIREGQIIKGGNKLTDDYIDECARCCISPEDYKLLGEPENVVV 324 Query: 279 IDHGGRRILLALEKSG 232 HG +L A+E G Sbjct: 325 SSHGNEVVLRAVEDPG 340
>FMDC_METTM (P61937) Molybdenum-containing formylmethanofuran dehydrogenase 1| subunit C (EC 1.2.99.5) (Molybdenum-containing formylmethanofuran dehydrogenase I subunit C) Length = 400 Score = 29.3 bits (64), Expect = 6.3 Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 7/76 (9%) Frame = -2 Query: 438 GRVVEPKKIPAMCGGG-------LVRFARFNTDDSRKLCKPCCLVCGEHSGEARETMLVV 280 GRV+ K I + G +++ TDD C CC+ ++ +VV Sbjct: 265 GRVITKKGIKVIYNSGSTIREGQIIKGGNKLTDDYIDECARCCISPEDYKLLGEPENVVV 324 Query: 279 IDHGGRRILLALEKSG 232 HG +L A+E G Sbjct: 325 SSHGNEVVLRAVEDPG 340
>FMDC_METTH (O27002) Molybdenum-containing formylmethanofuran dehydrogenase 1| subunit C (EC 1.2.99.5) (Molybdenum-containing formylmethanofuran dehydrogenase I subunit C) Length = 400 Score = 29.3 bits (64), Expect = 6.3 Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 7/76 (9%) Frame = -2 Query: 438 GRVVEPKKIPAMCGGG-------LVRFARFNTDDSRKLCKPCCLVCGEHSGEARETMLVV 280 GRV+ K I + G +++ TDD C CC+ ++ +VV Sbjct: 265 GRVITKKGIKVIYNSGSTIREGQIIKGGNKLTDDYIDECARCCISPEDYKLLGEPENVVV 324 Query: 279 IDHGGRRILLALEKSG 232 HG +L A+E G Sbjct: 325 SSHGNEVVLRAVEDPG 340
>BACA_BACLI (O68006) Bacitracin synthetase 1 (BA1) [Includes: ATP-dependent| isoleucine adenylase (IleA) (Isoleucine activase); ATP-dependent cysteine adenylase (CysA) (Cysteine activase); ATP-dependent leucine adenylase (LeuA) (Leucine activase); ATP-depe Length = 5255 Score = 29.3 bits (64), Expect = 6.3 Identities = 13/39 (33%), Positives = 22/39 (56%) Frame = +1 Query: 148 SRKIYIAYLGDVKHGHPDEVVASHHDMLTTLLQSKEDSS 264 ++ ++ + G VKHG PD + HHD + T + E S+ Sbjct: 1087 AKPLHELFTGQVKHG-PDRMALKHHDEVMTYQELDEKSN 1124
>TSC2_RAT (P49816) Tuberin (Tuberous sclerosis 2 homolog protein)| Length = 1809 Score = 28.9 bits (63), Expect = 8.2 Identities = 18/37 (48%), Positives = 23/37 (62%) Frame = -3 Query: 359 TPGNSASLVAWSAVSIAAKPEKPCL*L*TMEAEESSL 249 TPG ASL A +A AA+PEKPC AE+++L Sbjct: 1149 TPGGPASLGAQAAP--AARPEKPCAGAQLPAAEKANL 1183
>SNDH_ACELI (Q44091) L-sorbosone dehydrogenase (EC 1.1.1.-) (SNDH)| Length = 449 Score = 28.9 bits (63), Expect = 8.2 Identities = 27/93 (29%), Positives = 36/93 (38%) Frame = +1 Query: 49 GSSSSQHARQVAAWXXXXXXXXXXXXSRANGGGSRKIYIAYLGDVKHGHPDEVVASHHDM 228 G + SQ + AAW +R G R IY+ + GHPD + D+ Sbjct: 349 GIAFSQDSSLPAAWRNGLFVAQHGSWNRKPKSGYRVIYVPF----TDGHPD---GTPRDV 401 Query: 229 LTTLLQSKEDSSASMVYNYKHGFSGFAAMLTAD 327 LT L ED + SG A+L AD Sbjct: 402 LTGFLTQDEDHAHGRPVGLALDKSG--ALLVAD 432
>CBPA1_ANOGA (O02350) Zinc carboxypeptidase A 1 precursor (EC 3.4.17.-) (AgCP)| Length = 433 Score = 28.9 bits (63), Expect = 8.2 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 9/58 (15%) Frame = +1 Query: 145 GSRKIYIAYL------GDVKHGH---PDEVVASHHDMLTTLLQSKEDSSASMVYNYKH 291 G++ + IAY GD +G P+E+V + + L +L+ E+SSA Y+ KH Sbjct: 376 GAQDVKIAYTYELRPDGDAWNGFVLPPNEIVPTGEETLDSLITLLEESSARGYYDEKH 433
>SYH_PROMP (Q7V263) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA| ligase) (HisRS) Length = 429 Score = 28.9 bits (63), Expect = 8.2 Identities = 15/44 (34%), Positives = 26/44 (59%) Frame = -2 Query: 330 LVCGEHSGEARETMLVVIDHGGRRILLALEKSGEHVMMRGHDLV 199 ++CG E RET + +++ G +LA+E S + +R +DLV Sbjct: 312 ILCGSELEETRETDIYIVNKGIHAEILAMELSRK---LRNYDLV 352
>BTUB_SHIFL (Q83IS4) Vitamin B12 transporter btuB precursor (Cobalamin| receptor) (Outer membrane cobalamin translocator) Length = 614 Score = 28.9 bits (63), Expect = 8.2 Identities = 29/101 (28%), Positives = 41/101 (40%), Gaps = 8/101 (7%) Frame = +1 Query: 154 KIYIAYLGDVKHGHPDEVVASHHDMLTTLLQSKEDSSAS------MVYNYKHGFSGFAAM 315 K + LGD H H +VVA + T Q+ D S + +N+ +SGF Sbjct: 183 KTRVTLLGDYAHTHGYDVVA--YGNTGTQAQTDNDGFLSKTLYGALEHNFTDAWSGFVRG 240 Query: 316 LTADQATRLAEF--PGVISVEPSKTYKTTTTHSWDFLGLNY 432 D T + PG ++ K Y + SWD GL Y Sbjct: 241 YGYDNRTNYDAYYSPGSPLLDTRKLY----SQSWD-AGLRY 276
>BTUB_ECOLI (P06129) Vitamin B12 transporter btuB precursor (Cobalamin| receptor) (Outer membrane cobalamin translocator) Length = 614 Score = 28.9 bits (63), Expect = 8.2 Identities = 29/101 (28%), Positives = 41/101 (40%), Gaps = 8/101 (7%) Frame = +1 Query: 154 KIYIAYLGDVKHGHPDEVVASHHDMLTTLLQSKEDSSAS------MVYNYKHGFSGFAAM 315 K + LGD H H +VVA + T Q+ D S + +N+ +SGF Sbjct: 183 KTRVTLLGDYAHTHGYDVVA--YGNTGTQAQTDNDGFLSKTLYGALEHNFTDAWSGFVRG 240 Query: 316 LTADQATRLAEF--PGVISVEPSKTYKTTTTHSWDFLGLNY 432 D T + PG ++ K Y + SWD GL Y Sbjct: 241 YGYDNRTNYDAYYSPGSPLLDTRKLY----SQSWD-AGLRY 276 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 80,505,633 Number of Sequences: 219361 Number of extensions: 1729339 Number of successful extensions: 5063 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 4910 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5060 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3638905326 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
