Clone Information

BLAST Search Result

Clone Name	bastl21b03
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	AP2B1_RAT (P62944) AP-2 complex subunit beta-1 (Adapter-related ...	126	3e-29
2	AP2B1_MOUSE (Q9DBG3) AP-2 complex subunit beta-1 (Adapter-relate...	126	3e-29
3	AP2B1_HUMAN (P63010) AP-2 complex subunit beta-1 (Adapter-relate...	126	3e-29
4	AP1B1_MOUSE (O35643) AP-1 complex subunit beta-1 (Adapter-relate...	125	7e-29
5	AP1B1_RAT (P52303) AP-1 complex subunit beta-1 (Adapter-related ...	125	7e-29
6	AP1B1_HUMAN (Q10567) AP-1 complex subunit beta-1 (Adapter-relate...	125	7e-29
7	AP1B1_SCHPO (O43079) AP-1 complex subunit beta-1 (Beta(1)-adapti...	85	8e-17
8	AP2B1_BOVIN (P63009) AP-2 complex subunit beta-1 (Adapter-relate...	85	1e-16
9	AP1B1_YEAST (P36000) AP-1 complex subunit beta-1 (Beta(1)-adapti...	77	2e-14
10	AP3B1_CANFA (Q7YRF1) AP-3 complex subunit beta-1 (Adapter-relate...	60	2e-09
11	AP3B1_MOUSE (Q9Z1T1) AP-3 complex subunit beta-1 (Adapter-relate...	59	5e-09
12	AP3B1_HUMAN (O00203) AP-3 complex subunit beta-1 (Adapter-relate...	59	5e-09
13	AP2B_SCHPO (O43005) AP-2 complex subunit beta (Beta-adaptin) (Cl...	59	8e-09
14	AP3B2_MOUSE (Q9JME5) AP-3 complex subunit beta-2 (Adapter-relate...	53	4e-07
15	AP3B2_HUMAN (Q13367) AP-3 complex subunit beta-2 (Adapter-relate...	53	4e-07
16	AP3B_SCHPO (O13939) AP-3 complex subunit beta (Beta-adaptin) (Ad...	45	9e-05
17	AP3B_ASHGO (Q759E2) AP-3 complex subunit beta (Beta-adaptin) (Ad...	43	5e-04
18	AP4B1_HUMAN (Q9Y6B7) AP-4 complex subunit beta-1 (Adapter-relate...	41	0.002
19	AP4B1_MOUSE (Q9WV76) AP-4 complex subunit beta-1 (Adapter-relate...	40	0.004
20	AP3B_YEAST (P46682) AP-3 complex subunit beta (Beta-adaptin) (Ad...	39	0.005
21	RNZ_BRAJA (Q89NF8) Ribonuclease Z (EC 3.1.26.11) (RNase Z) (tRNa...	32	0.62
22	AP2B_YEAST (P27351) AP-2 complex subunit beta (Beta-adaptin) (Cl...	32	0.80
23	ATIN_BHV1P (P30020) Alpha trans-inducing protein (Alpha-TIF)	31	1.4
24	ICP4_EHV1V (Q6S6U0) Trans-acting transcriptional protein ICP4 (1...	31	1.8
25	ICP4_EHV1K (P17473) Trans-acting transcriptional protein ICP4 (1...	31	1.8
26	ICP4_EHV1B (P28925) Trans-acting transcriptional protein ICP4 (1...	31	1.8
27	AP3D_DROME (P54362) AP-3 complex subunit delta (Delta-adaptin) (...	30	3.1
28	KINH_STRPU (P35978) Kinesin heavy chain	30	4.0
29	RRF_WIGBR (Q8D2G5) Ribosome recycling factor (Ribosome-releasing...	30	4.0
30	VCOM_ADEM1 (O10442) Minor core protein (Protein V) (pV)	29	5.2
31	RENBP_PIG (P17560) N-acylglucosamine 2-epimerase (EC 5.1.3.8) (G...	29	5.2
32	CCNA2_CHICK (P43449) Cyclin-A2 (Cyclin-A)	29	5.2
33	VNUA_PRVKA (P33485) Probable nuclear antigen	29	5.2
34	U269_DEIRA (Q9RXP1) Protein DR0269	29	5.2
35	KCNC4_MOUSE (Q8R1C0) Potassium voltage-gated channel subfamily C...	29	6.8
36	LEA2_CICAR (O49817) Late embryogenesis abundant protein 2 (CapLE...	28	8.9
37	NELFA_HUMAN (Q9H3P2) Negative elongation factor A (NELF-A) (Wolf...	28	8.9
38	MLL3_HUMAN (Q8NEZ4) Myeloid/lymphoid or mixed-lineage leukemia p...	28	8.9
39	ROCK1_RABIT (O77819) Rho-associated protein kinase 1 (EC 2.7.11....	28	8.9
40	ROCK1_HUMAN (Q13464) Rho-associated protein kinase 1 (EC 2.7.11....	28	8.9
41	DPOLA_ORYSA (O48653) DNA polymerase alpha catalytic subunit (EC ...	28	8.9
42	ROCK1_PANTR (P61584) Rho-associated protein kinase 1 (EC 2.7.11....	28	8.9
43	ROCK1_BOVIN (Q8MIT6) Rho-associated protein kinase 1 (EC 2.7.11....	28	8.9
44	TARSH_HUMAN (Q7Z7G0) Target of Nesh-SH3 precursor (Tarsh) (Nesh-...	28	8.9
45	NOLA1_HUMAN (Q9NY12) H/ACA ribonucleoprotein complex subunit 1 (...	28	8.9

>AP2B1_RAT (P62944) AP-2 complex subunit beta-1 (Adapter-related protein|
           complex 2 beta-1 subunit) (Beta-adaptin) (Plasma
           membrane adaptor HA2/AP2 adaptin beta subunit) (Clathrin
           assembly protein complex 2 beta large chain) (AP105B)
          Length = 937

 Score =  126 bits (316), Expect = 3e-29
 Identities = 63/76 (82%), Positives = 70/76 (92%)
 Frame = +2

Query: 239 DSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCMQTEN 418
           DSKYF+T KKGEI ELK ELN++ K+KRK+AVKKVIAAMTVGKDVSSLF DVVNCMQT+N
Sbjct: 3   DSKYFTTNKKGEIFELKAELNNEKKEKRKEAVKKVIAAMTVGKDVSSLFPDVVNCMQTDN 62

Query: 419 LELXKLVYLYLINYAK 466
           LEL KLVYLYL+NYAK
Sbjct: 63  LELKKLVYLYLMNYAK 78

to top

>AP2B1_MOUSE (Q9DBG3) AP-2 complex subunit beta-1 (Adapter-related protein|
           complex 2 beta-1 subunit) (Beta-adaptin) (Plasma
           membrane adaptor HA2/AP2 adaptin beta subunit) (Clathrin
           assembly protein complex 2 beta large chain) (AP105B)
          Length = 937

 Score =  126 bits (316), Expect = 3e-29
 Identities = 63/76 (82%), Positives = 70/76 (92%)
 Frame = +2

Query: 239 DSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCMQTEN 418
           DSKYF+T KKGEI ELK ELN++ K+KRK+AVKKVIAAMTVGKDVSSLF DVVNCMQT+N
Sbjct: 3   DSKYFTTNKKGEIFELKAELNNEKKEKRKEAVKKVIAAMTVGKDVSSLFPDVVNCMQTDN 62

Query: 419 LELXKLVYLYLINYAK 466
           LEL KLVYLYL+NYAK
Sbjct: 63  LELKKLVYLYLMNYAK 78

to top

>AP2B1_HUMAN (P63010) AP-2 complex subunit beta-1 (Adapter-related protein|
           complex 2 beta-1 subunit) (Beta-adaptin) (Plasma
           membrane adaptor HA2/AP2 adaptin beta subunit) (Clathrin
           assembly protein complex 2 beta large chain) (AP105B)
          Length = 937

 Score =  126 bits (316), Expect = 3e-29
 Identities = 63/76 (82%), Positives = 70/76 (92%)
 Frame = +2

Query: 239 DSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCMQTEN 418
           DSKYF+T KKGEI ELK ELN++ K+KRK+AVKKVIAAMTVGKDVSSLF DVVNCMQT+N
Sbjct: 3   DSKYFTTNKKGEIFELKAELNNEKKEKRKEAVKKVIAAMTVGKDVSSLFPDVVNCMQTDN 62

Query: 419 LELXKLVYLYLINYAK 466
           LEL KLVYLYL+NYAK
Sbjct: 63  LELKKLVYLYLMNYAK 78

to top

>AP1B1_MOUSE (O35643) AP-1 complex subunit beta-1 (Adapter-related protein|
           complex 1 beta-1 subunit) (Beta-adaptin 1) (Adaptor
           protein complex AP-1 beta-1 subunit) (Golgi adaptor
           HA1/AP1 adaptin beta subunit) (Clathrin assembly protein
           complex 1 beta larg
          Length = 943

 Score =  125 bits (313), Expect = 7e-29
 Identities = 62/76 (81%), Positives = 70/76 (92%)
 Frame = +2

Query: 239 DSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCMQTEN 418
           DSKYF+TTKKGEI ELK ELNS  K+K+K+AVKKVIA+MTVGKDVS+LF DVVNCMQT+N
Sbjct: 3   DSKYFTTTKKGEIFELKAELNSDKKEKKKEAVKKVIASMTVGKDVSALFPDVVNCMQTDN 62

Query: 419 LELXKLVYLYLINYAK 466
           LEL KLVYLYL+NYAK
Sbjct: 63  LELKKLVYLYLMNYAK 78

to top

>AP1B1_RAT (P52303) AP-1 complex subunit beta-1 (Adapter-related protein|
           complex 1 beta-1 subunit) (Beta-adaptin 1) (Adaptor
           protein complex AP-1 beta-1 subunit) (Golgi adaptor
           HA1/AP1 adaptin beta subunit) (Clathrin assembly protein
           complex 1 beta large
          Length = 949

 Score =  125 bits (313), Expect = 7e-29
 Identities = 62/76 (81%), Positives = 70/76 (92%)
 Frame = +2

Query: 239 DSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCMQTEN 418
           DSKYF+TTKKGEI ELK ELNS  K+K+K+AVKKVIA+MTVGKDVS+LF DVVNCMQT+N
Sbjct: 3   DSKYFTTTKKGEIFELKAELNSDKKEKKKEAVKKVIASMTVGKDVSALFPDVVNCMQTDN 62

Query: 419 LELXKLVYLYLINYAK 466
           LEL KLVYLYL+NYAK
Sbjct: 63  LELKKLVYLYLMNYAK 78

to top

>AP1B1_HUMAN (Q10567) AP-1 complex subunit beta-1 (Adapter-related protein|
           complex 1 beta-1 subunit) (Beta-adaptin 1) (Adaptor
           protein complex AP-1 beta-1 subunit) (Golgi adaptor
           HA1/AP1 adaptin beta subunit) (Clathrin assembly protein
           complex 1 beta larg
          Length = 949

 Score =  125 bits (313), Expect = 7e-29
 Identities = 62/76 (81%), Positives = 70/76 (92%)
 Frame = +2

Query: 239 DSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCMQTEN 418
           DSKYF+TTKKGEI ELK ELNS  K+K+K+AVKKVIA+MTVGKDVS+LF DVVNCMQT+N
Sbjct: 3   DSKYFTTTKKGEIFELKAELNSDKKEKKKEAVKKVIASMTVGKDVSALFPDVVNCMQTDN 62

Query: 419 LELXKLVYLYLINYAK 466
           LEL KLVYLYL+NYAK
Sbjct: 63  LELKKLVYLYLMNYAK 78

to top

>AP1B1_SCHPO (O43079) AP-1 complex subunit beta-1 (Beta(1)-adaptin) (Clathrin|
           assembly protein large beta-1 chain) (Clathrin assembly
           protein complex 1 beta-1 large chain)
          Length = 683

 Score = 85.1 bits (209), Expect = 8e-17
 Identities = 46/75 (61%), Positives = 54/75 (72%)
 Frame = +2

Query: 242 SKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCMQTENL 421
           S  F   KK E  EL++ L SQY  +R DAVK+ IAAMTVGKDVSSLF DV+  + T ++
Sbjct: 8   SSRFKAFKKSETSELQKGLVSQYAYERIDAVKRTIAAMTVGKDVSSLFPDVLKNLATRDI 67

Query: 422 ELXKLVYLYLINYAK 466
            L KLVYLYLINYAK
Sbjct: 68  TLKKLVYLYLINYAK 82

to top

>AP2B1_BOVIN (P63009) AP-2 complex subunit beta-1 (Adapter-related protein|
           complex 2 beta-1 subunit) (Beta-adaptin) (Plasma
           membrane adaptor HA2/AP2 adaptin beta subunit) (Clathrin
           assembly protein complex 2 beta large chain) (AP105B)
           (Fragment)
          Length = 236

 Score = 84.7 bits (208), Expect = 1e-16
 Identities = 42/46 (91%), Positives = 44/46 (95%)
 Frame = +2

Query: 329 AVKKVIAAMTVGKDVSSLFTDVVNCMQTENLELXKLVYLYLINYAK 466
           AVKKVIAAMTVGKDVSSLF DVVNCMQT+NLEL KLVYLYL+NYAK
Sbjct: 1   AVKKVIAAMTVGKDVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAK 46

to top

>AP1B1_YEAST (P36000) AP-1 complex subunit beta-1 (Beta(1)-adaptin) (Clathrin|
           assembly protein large beta-1 chain) (Clathrin assembly
           protein complex 1 beta-1 large chain)
          Length = 726

 Score = 77.4 bits (189), Expect = 2e-14
 Identities = 39/67 (58%), Positives = 50/67 (74%)
 Frame = +2

Query: 266 KGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCMQTENLELXKLVYL 445
           KGE+ EL+  L SQY   RKDA+KK I  MT+GKDVSSLF DV+  + T ++E  KLVYL
Sbjct: 25  KGELSELRTGLVSQYPQTRKDAIKKTIQQMTLGKDVSSLFPDVLKNIATIDVEQKKLVYL 84

Query: 446 YLINYAK 466
           Y++NYA+
Sbjct: 85  YVMNYAE 91

to top

>AP3B1_CANFA (Q7YRF1) AP-3 complex subunit beta-1 (Adapter-related protein|
           complex 3 beta-1 subunit) (Beta3A-adaptin) (Adaptor
           protein complex AP-3 beta-1 subunit) (Clathrin assembly
           protein complex 3 beta-1 large chain)
          Length = 1091

 Score = 60.5 bits (145), Expect = 2e-09
 Identities = 36/98 (36%), Positives = 56/98 (57%), Gaps = 1/98 (1%)
 Frame = +2

Query: 176 AGGGDRCVFGR*ARRG-DMSGHDSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAA 352
           AGGG+    G+ A      SG    + S  KK E  +LK+ L S     + DA+K+++  
Sbjct: 12  AGGGEATELGQEATSTVSPSGAFGLFSSDLKKNE--DLKQMLESNKDSAKLDAMKRIVGM 69

Query: 353 MTVGKDVSSLFTDVVNCMQTENLELXKLVYLYLINYAK 466
           +  GK+ S LF  VV  + ++N+E+ KLVY+YL+ YA+
Sbjct: 70  IAKGKNASELFPAVVKNVASKNIEIKKLVYVYLVRYAE 107

to top

>AP3B1_MOUSE (Q9Z1T1) AP-3 complex subunit beta-1 (Adapter-related protein|
           complex 3 beta-1 subunit) (Beta3A-adaptin) (Adaptor
           protein complex AP-3 beta-1 subunit) (Clathrin assembly
           protein complex 3 beta-1 large chain)
          Length = 1105

 Score = 59.3 bits (142), Expect = 5e-09
 Identities = 35/98 (35%), Positives = 56/98 (57%), Gaps = 1/98 (1%)
 Frame = +2

Query: 176 AGGGDRCVFGR*ARRG-DMSGHDSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAA 352
           +GGG+    G+ A      SG    + S  KK E  +LK+ L S     + DA+K+++  
Sbjct: 12  SGGGEAAELGQEATSTISPSGAFGLFSSDWKKNE--DLKQMLESNKDSAKLDAMKRIVGM 69

Query: 353 MTVGKDVSSLFTDVVNCMQTENLELXKLVYLYLINYAK 466
           +  GK+ S LF  VV  + ++N+E+ KLVY+YL+ YA+
Sbjct: 70  IAKGKNASELFPAVVKNVASKNIEIKKLVYVYLVRYAE 107

to top

>AP3B1_HUMAN (O00203) AP-3 complex subunit beta-1 (Adapter-related protein|
           complex 3 beta-1 subunit) (Beta3A-adaptin) (Adaptor
           protein complex AP-3 beta-1 subunit) (Clathrin assembly
           protein complex 3 beta-1 large chain)
          Length = 1094

 Score = 59.3 bits (142), Expect = 5e-09
 Identities = 35/98 (35%), Positives = 56/98 (57%), Gaps = 1/98 (1%)
 Frame = +2

Query: 176 AGGGDRCVFGR*ARRG-DMSGHDSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAA 352
           +GGG+    G+ A      SG    + S  KK E  +LK+ L S     + DA+K+++  
Sbjct: 12  SGGGEATELGQEATSTISPSGAFGLFSSDLKKNE--DLKQMLESNKDSAKLDAMKRIVGM 69

Query: 353 MTVGKDVSSLFTDVVNCMQTENLELXKLVYLYLINYAK 466
           +  GK+ S LF  VV  + ++N+E+ KLVY+YL+ YA+
Sbjct: 70  IAKGKNASELFPAVVKNVASKNIEIKKLVYVYLVRYAE 107

to top

>AP2B_SCHPO (O43005) AP-2 complex subunit beta (Beta-adaptin) (Clathrin|
           assembly protein large beta chain) (Clathrin assembly
           protein complex 2 beta large chain)
          Length = 677

 Score = 58.5 bits (140), Expect = 8e-09
 Identities = 31/74 (41%), Positives = 45/74 (60%)
 Frame = +2

Query: 242 SKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCMQTENL 421
           S +FS+T    +     +   +  +KR  A+KK IA ++ G D+SSLF  V++ M++ NL
Sbjct: 5   SSHFSSTAADLLAVFSSDNKDKSANKRISALKKAIAGISYGYDMSSLFPSVISSMESNNL 64

Query: 422 ELXKLVYLYLINYA 463
           EL KL YLYL  YA
Sbjct: 65  ELKKLCYLYLKIYA 78

to top

>AP3B2_MOUSE (Q9JME5) AP-3 complex subunit beta-2 (Adapter-related protein|
           complex 3 beta-2 subunit) (Beta3B-adaptin) (Adaptor
           protein complex AP-3 beta-2 subunit) (Clathrin assembly
           protein complex 3 beta-2 large chain)
          Length = 1082

 Score = 52.8 bits (125), Expect = 4e-07
 Identities = 30/81 (37%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
 Frame = +2

Query: 233 GHDSK---YFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNC 403
           GHD      FS+  K    +LKE L++     + +A+K+++A +  GK+ S LF  VV  
Sbjct: 23  GHDPASGGIFSSDYKRH-DDLKEMLDTNKDSLKLEAMKRIVAMIARGKNASDLFPAVVKN 81

Query: 404 MQTENLELXKLVYLYLINYAK 466
           +  +N+E+ KLVY+YL+ YA+
Sbjct: 82  VACKNIEVKKLVYVYLVRYAE 102

to top

>AP3B2_HUMAN (Q13367) AP-3 complex subunit beta-2 (Adapter-related protein|
           complex 3 beta-2 subunit) (Beta3B-adaptin) (Adaptor
           protein complex AP-3 beta-2 subunit) (AP-3 complex
           beta-2 subunit) (Clathrin assembly protein complex 3
           beta-2 large chain) (Neu
          Length = 1082

 Score = 52.8 bits (125), Expect = 4e-07
 Identities = 30/81 (37%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
 Frame = +2

Query: 233 GHDSK---YFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNC 403
           GHD      FS+  K    +LKE L++     + +A+K+++A +  GK+ S LF  VV  
Sbjct: 23  GHDPASGGIFSSDYKRH-DDLKEMLDTNKDSLKLEAMKRIVAMIARGKNASDLFPAVVKN 81

Query: 404 MQTENLELXKLVYLYLINYAK 466
           +  +N+E+ KLVY+YL+ YA+
Sbjct: 82  VACKNIEVKKLVYVYLVRYAE 102

to top

>AP3B_SCHPO (O13939) AP-3 complex subunit beta (Beta-adaptin) (Adapter-related|
           protein complex 3 beta subunit) (Clathrin assembly
           protein large beta chain) (Clathrin assembly protein
           complex 3 beta large chain)
          Length = 745

 Score = 45.1 bits (105), Expect = 9e-05
 Identities = 22/62 (35%), Positives = 39/62 (62%)
 Frame = +2

Query: 281 ELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCMQTENLELXKLVYLYLINY 460
           +L   LNS     + +A+  ++A M  G+++S  F DVV  + +EN E+ +LV++YL+ Y
Sbjct: 37  DLLRLLNSNSDAGKLEAINFILAQMMHGENMSLYFPDVVKLVASENPEIRRLVHIYLLQY 96

Query: 461 AK 466
           A+
Sbjct: 97  AE 98

to top

>AP3B_ASHGO (Q759E2) AP-3 complex subunit beta (Beta-adaptin) (Adapter-related|
           protein complex 3 beta subunit) (Clathrin assembly
           protein large beta chain) (Clathrin assembly protein
           complex 3 beta large chain)
          Length = 781

 Score = 42.7 bits (99), Expect = 5e-04
 Identities = 22/79 (27%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
 Frame = +2

Query: 239 DSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGK---DVSSLFTDVVNCMQ 409
           +S YF  +K  +   L   LNS+Y  + +D +K+V++ M  G    ++ + F D+V  + 
Sbjct: 32  ESSYFHYSKSIDSESLPGLLNSRYTREVRDGMKRVMSLMGSGDSSIELETHFADIVKNIG 91

Query: 410 TENLELXKLVYLYLINYAK 466
           ++++++ ++V +YL+ YA+
Sbjct: 92  SDDVKVRRMVSVYLLRYAE 110

to top

>AP4B1_HUMAN (Q9Y6B7) AP-4 complex subunit beta-1 (Adapter-related protein|
           complex 4 beta 1 subunit) (Beta subunit of AP-4) (AP-4
           adapter complex beta subunit)
          Length = 739

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 22/67 (32%), Positives = 40/67 (59%), Gaps = 4/67 (5%)
 Frame = +2

Query: 275 IPELKEELNSQY----KDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCMQTENLELXKLVY 442
           + ELK+ L + +    + + ++ +++VI  MT G D+S +F ++V    T ++   KLVY
Sbjct: 10  VKELKKALCNPHIQADRLRYRNVIQRVIRYMTQGLDMSGVFMEMVKASATVDIVQKKLVY 69

Query: 443 LYLINYA 463
           LY+  YA
Sbjct: 70  LYMCTYA 76

to top

>AP4B1_MOUSE (Q9WV76) AP-4 complex subunit beta-1 (Adapter-related protein|
           complex 4 beta-1 subunit) (Beta subunit of AP-4) (AP-4
           adapter complex beta subunit)
          Length = 739

 Score = 39.7 bits (91), Expect = 0.004
 Identities = 22/67 (32%), Positives = 40/67 (59%), Gaps = 4/67 (5%)
 Frame = +2

Query: 275 IPELKEELNSQY----KDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCMQTENLELXKLVY 442
           + ELK+ L + +    + + ++ +++VI  MT G D+S +F ++V    T ++   KLVY
Sbjct: 10  VKELKKALCNPHIQADRLRYRNVIQRVIRHMTQGLDMSDVFMEMVKASATVDIVQKKLVY 69

Query: 443 LYLINYA 463
           LY+  YA
Sbjct: 70  LYMGTYA 76

to top

>AP3B_YEAST (P46682) AP-3 complex subunit beta (Beta-adaptin) (Adapter-related|
           protein complex 3 beta subunit) (Clathrin assembly
           protein large beta chain) (Clathrin assembly protein
           complex 3 beta large chain)
          Length = 809

 Score = 39.3 bits (90), Expect = 0.005
 Identities = 23/79 (29%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
 Frame = +2

Query: 239 DSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKD---VSSLFTDVVNCMQ 409
           +S Y   ++     +L   LNS+   + +DA+K++I+ M    D   V   F DVV  + 
Sbjct: 32  ESSYTYYSQNINPQQLVTLLNSRNSREVRDAMKRIISIMASDDDSIDVQLYFADVVKNIT 91

Query: 410 TENLELXKLVYLYLINYAK 466
           T + ++ +L++LYL+ +A+
Sbjct: 92  TNDTKVKRLIHLYLLRFAE 110

to top

>RNZ_BRAJA (Q89NF8) Ribonuclease Z (EC 3.1.26.11) (RNase Z) (tRNase Z) (tRNA 3|
           endonuclease)
          Length = 301

 Score = 32.3 bits (72), Expect = 0.62
 Identities = 22/61 (36%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
 Frame = -3

Query: 195 HRSPPPAAEPGVRDGGLRYARGGGRPACLRDGMGLD--SARGSQAGVRACESYGDQTDRE 22
           H  P   A  GV DG LR     GRP  + DG  +D     G   G R     GD    E
Sbjct: 157 HLLPDRLASLGVPDGPLRGELAQGRPVVIEDGRTIDPEDVLGPATGGRKLVVIGDTETTE 216

Query: 21  G 19
           G
Sbjct: 217 G 217

to top

>AP2B_YEAST (P27351) AP-2 complex subunit beta (Beta-adaptin) (Clathrin|
           assembly protein large beta chain) (Clathrin assembly
           protein complex 2 beta large chain)
          Length = 700

 Score = 32.0 bits (71), Expect = 0.80
 Identities = 23/78 (29%), Positives = 47/78 (60%), Gaps = 7/78 (8%)
 Frame = +2

Query: 239 DSKYFSTTKKGEI-PELKEELNSQYKD---KRKDAVKKVIAAMTVGK--DVSSLFTDVVN 400
           D K F+  K  EI  +L+     ++K    +RK+A++K+IA + +G   ++S LF++++ 
Sbjct: 3   DQKVFARYKANEIVTDLQHFGVKKFKSNITRRKNALRKIIANLVLGNYGEMSVLFSELLK 62

Query: 401 CMQTE-NLELXKLVYLYL 451
             Q E +LE+ ++ + Y+
Sbjct: 63  FWQIEDDLEVKRICHEYI 80

to top

>ATIN_BHV1P (P30020) Alpha trans-inducing protein (Alpha-TIF)|
          Length = 504

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = -3

Query: 138 ARGGGRPACLRDGMGLDSARGSQAGVRAC 52
           ARGG  P+ +R G+GL  ARGS     AC
Sbjct: 439 ARGGPGPSPVRSGLGLSRARGSPGPGPAC 467

to top

>ICP4_EHV1V (Q6S6U0) Trans-acting transcriptional protein ICP4 (155 kDa|
           immediate-early protein)
          Length = 1487

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = -3

Query: 225 SPRRAYLPNTHRSPPPAAEPGVRDGGLRYARGGGRPACLRDG 100
           +PR  +  N  ++P  A  PG   GG R A G   P   R G
Sbjct: 226 TPRPRHSQNAAKTPSAAGSPGPSSGGDRPAAGAATPKSCRSG 267

to top

>ICP4_EHV1K (P17473) Trans-acting transcriptional protein ICP4 (155 kDa|
           immediate-early protein)
          Length = 1487

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = -3

Query: 225 SPRRAYLPNTHRSPPPAAEPGVRDGGLRYARGGGRPACLRDG 100
           +PR  +  N  ++P  A  PG   GG R A G   P   R G
Sbjct: 226 TPRPRHSQNAAKTPSAAGSPGPSSGGDRPAAGAATPKSCRSG 267

to top

>ICP4_EHV1B (P28925) Trans-acting transcriptional protein ICP4 (155 kDa|
           immediate-early protein)
          Length = 1487

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = -3

Query: 225 SPRRAYLPNTHRSPPPAAEPGVRDGGLRYARGGGRPACLRDG 100
           +PR  +  N  ++P  A  PG   GG R A G   P   R G
Sbjct: 226 TPRPRHSQNAAKTPSAAGSPGPSSGGDRPAAGAATPKSCRSG 267

to top

>AP3D_DROME (P54362) AP-3 complex subunit delta (Delta-adaptin) (Garnet|
           protein) (Delta adaptin subunit of AP-3)
          Length = 1034

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 18/70 (25%), Positives = 34/70 (48%)
 Frame = +2

Query: 236 HDSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCMQTE 415
           +++KY ST     I E+K+EL       + +AV K+     +G D+S    +++  M + 
Sbjct: 32  NEAKYISTC----IEEIKQELRQDNISVKCNAVAKLTYIQMLGYDISWAGFNIIEVMSSS 87

Query: 416 NLELXKLVYL 445
                ++ YL
Sbjct: 88  RFTCKRIGYL 97

to top

>KINH_STRPU (P35978) Kinesin heavy chain|
          Length = 1031

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -3

Query: 195  HRSPPPAAEPGVRDGGLRYARGGGRP 118
            H  P P    G+R GG    RGGG P
Sbjct: 925  HPPPSPGGSTGIRGGGYSGIRGGGSP 950

to top

>RRF_WIGBR (Q8D2G5) Ribosome recycling factor (Ribosome-releasing factor)|
           (RRF)
          Length = 185

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = +2

Query: 320 RKDA---VKKVIAAMTVGKDVSSLFTDVVNCMQTENLELXKLV 439
           R+DA   +KK+I A T+GKD    F +V+  +    +E  K +
Sbjct: 132 RRDANEKIKKLIKAKTIGKDEDKKFQEVIQNLTNSRIEDTKKI 174

to top

>VCOM_ADEM1 (O10442) Minor core protein (Protein V) (pV)|
          Length = 228

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 17/40 (42%), Positives = 20/40 (50%)
 Frame = +1

Query: 67  RLAPPRRVQSHPIAQTGRPPATARISEASITNPGLRSRRR 186
           R  PP  V+ HP  +  RPPA      A I+ P  R RRR
Sbjct: 130 RAVPPVGVRYHPSIEVARPPA------ARISPPRRRRRRR 163

to top

>RENBP_PIG (P17560) N-acylglucosamine 2-epimerase (EC 5.1.3.8) (GlcNAc|
           2-epimerase) (N-acetyl-D-glucosamine 2-epimerase) (AGE)
           (Renin-binding protein) (RnBP)
          Length = 402

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 4/86 (4%)
 Frame = +1

Query: 61  HTRLAPPRRVQSHPIAQTGRPPATAR--ISEASITNPGLRSRRR*PVCIWQVGSPGRYER 234
           H R+APP +  +  + + GRP    R   SE   T             +W+V +  RY+ 
Sbjct: 94  HARVAPPEKKCAFVLTRDGRPVKVQRSIFSECFYTMAMNE--------LWRVTAEARYQS 145

Query: 235 ARLQVL--LHHQKGGDPRAQGGAQLP 306
             + ++  + H    DP   G  QLP
Sbjct: 146 EAVDMMDQIVHWVREDPSGLGRPQLP 171

to top

>CCNA2_CHICK (P43449) Cyclin-A2 (Cyclin-A)|
          Length = 395

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = -3

Query: 207 LPNTHRSPPPAAEPGVRDGGLR--YARGGGRPACLRDGMGLDSARGSQAGVRACESYGDQ 34
           +P   ++PPPAA   V  G LR   AR G      R+G G  +A G Q   +    Y D+
Sbjct: 11  VPPAAKAPPPAAGTRVALGLLRGGPARPGPAAQAARNGEGRGAAAGQQQ--QPFSVYVDE 68

Query: 33  TDRE 22
            D E
Sbjct: 69  PDEE 72

to top

>VNUA_PRVKA (P33485) Probable nuclear antigen|
          Length = 1733

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 2/70 (2%)
 Frame = -3

Query: 207 LPNTHRSPPPAAEPGVRDGGLRYARGGGRP--ACLRDGMGLDSARGSQAGVRACESYGDQ 34
           LP     PPP   P       R  RGGG P     R G     A G++A     E   ++
Sbjct: 284 LPPPPPPPPPPQPPPAGGSARRRRRGGGPPGRGGRRRGGKRRRAEGTEAAAADAE---EE 340

Query: 33  TDREGDDSGD 4
            D +GD+  D
Sbjct: 341 EDGDGDEDED 350

to top

>U269_DEIRA (Q9RXP1) Protein DR0269|
          Length = 322

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 23/56 (41%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
 Frame = -3

Query: 165 GVRDGGLRYARGGGRPACLRDGMGLDSARGSQAGVRACESYGDQT---DREGDDSG 7
           G R G     RGG RP   R G G D  RG   G R  E  G+++   DR GD  G
Sbjct: 138 GFRGGDRGGDRGGFRPREDRGGFGGDRDRG---GFRPREDRGERSFGGDRGGDRGG 190

to top

>KCNC4_MOUSE (Q8R1C0) Potassium voltage-gated channel subfamily C member 4|
           (Voltage-gated potassium channel subunit Kv3.4)
          Length = 628

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 16/45 (35%), Positives = 19/45 (42%)
 Frame = -3

Query: 168 PGVRDGGLRYARGGGRPACLRDGMGLDSARGSQAGVRACESYGDQ 34
           PG R   L    GGGRP     G G   + G   G   CE + D+
Sbjct: 58  PGTRLAWLADPDGGGRPESDGGGAGSSGSSGGGGGGGGCEFFFDR 102

to top

>LEA2_CICAR (O49817) Late embryogenesis abundant protein 2 (CapLEA-2)|
          Length = 155

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +2

Query: 227 MSGHDSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSS 379
           M+ HD  Y +   KG   E   ++    +DK + A +K   A    KD +S
Sbjct: 1   MTSHDQSYRAGEAKGRTEEKTNQMIGNIEDKAQAAKEKAQQAAQTAKDKTS 51

to top

>NELFA_HUMAN (Q9H3P2) Negative elongation factor A (NELF-A) (Wolf-Hirschhorn|
           syndrome candidate 2 protein)
          Length = 549

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -3

Query: 270 PFLVVEKYLESCPLISPRRAYLPNTHRSPPPAAEPGVR 157
           P L    YL S P + P  +Y+P++   P P++    R
Sbjct: 338 PALPSTSYLPSTPSVVPASSYIPSSETPPAPSSREASR 375

to top

>MLL3_HUMAN (Q8NEZ4) Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog|
            (Histone-lysine N-methyltransferase, H3 lysine-4 specific
            MLL3) (EC 2.1.1.43) (Homologous to ALR protein)
          Length = 4911

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
 Frame = -3

Query: 234  PLISPRRAYLPNTHRSP--PPAAEPGVRDGGLRYARGGG 124
            P + PR A  P   R P  P  A  G+R  G R+   GG
Sbjct: 2449 PPLGPRYAVFPKDQRGPYPPDVASMGMRPHGFRFGFPGG 2487

to top

>ROCK1_RABIT (O77819) Rho-associated protein kinase 1 (EC 2.7.11.1)|
           (Rho-associated, coiled-coil-containing protein kinase
           1) (p160 ROCK-1) (p160ROCK) (cAMP-dependent protein
           kinase ROCK-I) (CePKA) (Corneal epithelial
           Rho-associated-Ser/Thr kinase 1) (HEB
          Length = 1354

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 13/33 (39%), Positives = 23/33 (69%)
 Frame = +2

Query: 245 KYFSTTKKGEIPELKEELNSQYKDKRKDAVKKV 343
           +YFST  K ++ ELKEE+    ++K ++ +KK+
Sbjct: 850 QYFSTLYKTQVKELKEEI----EEKNRENLKKI 878

to top

>ROCK1_HUMAN (Q13464) Rho-associated protein kinase 1 (EC 2.7.11.1)|
           (Rho-associated, coiled-coil-containing protein kinase
           1) (p160 ROCK-1) (p160ROCK) (NY-REN-35 antigen)
          Length = 1354

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 13/33 (39%), Positives = 23/33 (69%)
 Frame = +2

Query: 245 KYFSTTKKGEIPELKEELNSQYKDKRKDAVKKV 343
           +YFST  K ++ ELKEE+    ++K ++ +KK+
Sbjct: 850 QYFSTLYKTQVKELKEEI----EEKNRENLKKI 878

to top

>DPOLA_ORYSA (O48653) DNA polymerase alpha catalytic subunit (EC 2.7.7.7)|
          Length = 1534

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -3

Query: 267 FLVVEKYLESCPLISPRRAYLPNTHRSPPPAAEPGVRDGGLRYARG 130
           F+V +K+  S    S +R   P+T  + P  A+P + D G    +G
Sbjct: 852 FIVPDKFARSKEFNSTKRKMNPDTEAARPDEADPSIDDEGHHVDQG 897

to top

>ROCK1_PANTR (P61584) Rho-associated protein kinase 1 (EC 2.7.11.1)|
           (Rho-associated, coiled-coil-containing protein kinase
           1) (p160 ROCK-1) (p160ROCK) (Fragment)
          Length = 1003

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 13/33 (39%), Positives = 23/33 (69%)
 Frame = +2

Query: 245 KYFSTTKKGEIPELKEELNSQYKDKRKDAVKKV 343
           +YFST  K ++ ELKEE+    ++K ++ +KK+
Sbjct: 499 QYFSTLYKTQVKELKEEI----EEKNRENLKKI 527

to top

>ROCK1_BOVIN (Q8MIT6) Rho-associated protein kinase 1 (EC 2.7.11.1)|
           (Rho-associated, coiled-coil-containing protein kinase
           1) (p160 ROCK-1) (p160ROCK) (Fragment)
          Length = 441

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 13/33 (39%), Positives = 23/33 (69%)
 Frame = +2

Query: 245 KYFSTTKKGEIPELKEELNSQYKDKRKDAVKKV 343
           +YFST  K ++ ELKEE+    ++K ++ +KK+
Sbjct: 257 QYFSTLYKTQVKELKEEI----EEKNRENLKKI 285

to top

>TARSH_HUMAN (Q7Z7G0) Target of Nesh-SH3 precursor (Tarsh) (Nesh-binding|
           protein) (NeshBP) (ABI gene family member 3-binding
           protein)
          Length = 1075

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 16/36 (44%), Positives = 18/36 (50%)
 Frame = +1

Query: 79  PRRVQSHPIAQTGRPPATARISEASITNPGLRSRRR 186
           PRR    P   TG+P +   IS   IT P LRS  R
Sbjct: 716 PRRKPLPPNNVTGKPGSAGIISSGPITTPPLRSTPR 751

to top

>NOLA1_HUMAN (Q9NY12) H/ACA ribonucleoprotein complex subunit 1 (Nucleolar|
           protein family A member 1) (snoRNP protein GAR1)
          Length = 217

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 19/48 (39%), Positives = 20/48 (41%)
 Frame = -3

Query: 207 LPNTHRSPPPAAEPGVRDGGLRYARGGGRPACLRDGMGLDSARGSQAG 64
           LP     P P  E G   GG R  RGGGR    R G      RG + G
Sbjct: 152 LPLQRFLPRPPGEKGPPRGGGRGGRGGGRGGGGRGGGRGGGFRGGRGG 199


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,678,179
Number of Sequences: 219361
Number of extensions: 1118447
Number of successful extensions: 4514
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 4219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4500
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3014947676
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result