ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl21a11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1K1543_HUMAN (Q9P1Y5) Protein KIAA1543 32 0.94
2K1543_MOUSE (Q80VC9) Protein KIAA1543 32 0.94
3LEPA2_LACPL (Q88T65) GTP-binding protein lepA2 30 3.6
4LASS1_MOUSE (P27545) LAG1 longevity assurance homolog 1 (UOG-1 p... 29 7.9

>K1543_HUMAN (Q9P1Y5) Protein KIAA1543|
          Length = 1249

 Score = 32.0 bits (71), Expect = 0.94
 Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
 Frame = +2

Query: 233 EIAARAWLESFPDGRPPTEPEVDAYIDAHRPELPSLPRSQL------HQRLLALRGDQVL 394
           E+  RAW ++ P    P  P     + A R  +P+LP   +      HQ +L      V+
Sbjct: 82  ELYCRAWRQALPQLETPPNPSALLALLARRGTVPALPERPVREADLRHQPILMGAHLAVI 141

Query: 395 DPDQSAFPYRFQRT 436
           D   +AF + + +T
Sbjct: 142 DALMAAFAFEWTKT 155



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>K1543_MOUSE (Q80VC9) Protein KIAA1543|
          Length = 1252

 Score = 32.0 bits (71), Expect = 0.94
 Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 6/74 (8%)
 Frame = +2

Query: 233 EIAARAWLESFPDGRPPTEPEVDAYIDAHRPELPSLPRSQL------HQRLLALRGDQVL 394
           E+  RAW ++ P   P   P     + A R  +PSLP   +      HQ +L      V+
Sbjct: 82  ELYCRAWRQALPQLEPSPSPSALLALLARRGTVPSLPEHPVREADLKHQPILMGAHLAVI 141

Query: 395 DPDQSAFPYRFQRT 436
           D    AF + + +T
Sbjct: 142 DALMVAFSFEWTKT 155



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>LEPA2_LACPL (Q88T65) GTP-binding protein lepA2|
          Length = 595

 Score = 30.0 bits (66), Expect = 3.6
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = +2

Query: 296 VDAYIDAHRPELPSLPRSQLHQRLLALRGDQVLDPDQSAFPY 421
           V A ++A +  LP+ P+  LHQ L AL  D + DP Q    Y
Sbjct: 172 VPAVLEAIKQRLPA-PQGDLHQPLKALVFDSLYDPYQGVIAY 212



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>LASS1_MOUSE (P27545) LAG1 longevity assurance homolog 1 (UOG-1 protein)|
          Length = 350

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +3

Query: 411 HSHTGSSEPISGSLCISGWKLLRWTR*LH 497
           H+H  + E +   LC  GW  LRW    H
Sbjct: 52  HAHLAAPELLLAVLCALGWTALRWAATTH 80


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,922,444
Number of Sequences: 219361
Number of extensions: 516557
Number of successful extensions: 2308
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2300
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3523384522
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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