>PSD2_HUMAN (Q13200) 26S proteasome non-ATPase regulatory subunit 2 (26S|
           proteasome regulatory subunit RPN1) (26S proteasome
           regulatory subunit S2) (26S proteasome subunit p97)
           (Tumor necrosis factor type 1 receptor-associated
           protein 2) (55.11 protein)
          Length = 908

 Score = 91.3 bits (225), Expect = 1e-18
 Identities = 45/82 (54%), Positives = 60/82 (73%)
 Frame = +1

Query: 268 QLELYVVRAQDVDPGVQRLALESMRQEIRSATSSMTSVPKPLKFLRPHYGTLXTYYESMP 447
           +LE+ V R  + D  + R ALE +R++IRS+T+SMTSVPKPLKFLRPHYG L   YE+M 
Sbjct: 55  ELEMLVERLGEKDTSLYRPALEELRRQIRSSTTSMTSVPKPLKFLRPHYGKLKEIYENMA 114

Query: 448 ESELKKYMADILXGVALTMSAE 513
             E K++ ADI+  +A+TMS E
Sbjct: 115 PGENKRFAADIISVLAMTMSGE 136

>PSD2_MOUSE (Q8VDM4) 26S proteasome non-ATPase regulatory subunit 2 (26S|
           proteasome regulatory subunit RPN1) (26S proteasome
           regulatory subunit S2) (26S proteasome subunit p97)
          Length = 908

 Score = 89.4 bits (220), Expect = 5e-18
 Identities = 45/82 (54%), Positives = 59/82 (71%)
 Frame = +1

Query: 268 QLELYVVRAQDVDPGVQRLALESMRQEIRSATSSMTSVPKPLKFLRPHYGTLXTYYESMP 447
           +LE+ V R  + D  + R ALE +R++IRS+T+SMTSVPKPLKFLRPHYG L   YE+M 
Sbjct: 55  ELEMLVERLGEKDTSLYRPALEELRRQIRSSTTSMTSVPKPLKFLRPHYGKLKEIYENMA 114

Query: 448 ESELKKYMADILXGVALTMSAE 513
             E K + ADI+  +A+TMS E
Sbjct: 115 PGENKCFAADIISVLAMTMSGE 136

>RPN1_SCHPO (P87048) 26S proteasome regulatory subunit rpn1 (Proteasome|
           non-ATPase subunit mts4) (19S regulatory cap region of
           26S protease subunit 2)
          Length = 891

 Score = 76.3 bits (186), Expect = 5e-14
 Identities = 39/79 (49%), Positives = 53/79 (67%)
 Frame = +1

Query: 271 LELYVVRAQDVDPGVQRLALESMRQEIRSATSSMTSVPKPLKFLRPHYGTLXTYYESMPE 450
           LEL V   QD  P +   +L  +++ IR++TSSMT+VPKPLKFLRPHY TL   Y+S P+
Sbjct: 57  LELLVQAVQDATPELVGSSLTQLKEIIRTSTSSMTAVPKPLKFLRPHYFTLVKIYDSWPQ 116

Query: 451 SELKKYMADILXGVALTMS 507
           S  K  +ADIL  + ++ S
Sbjct: 117 SPQKTQLADILSVLGMSYS 135

>RPN1_NEUCR (Q7S8R8) 26S proteasome regulatory subunit rpn-1|
          Length = 883

 Score = 73.6 bits (179), Expect = 3e-13
 Identities = 34/73 (46%), Positives = 50/73 (68%)
 Frame = +1

Query: 295 QDVDPGVQRLALESMRQEIRSATSSMTSVPKPLKFLRPHYGTLXTYYESMPESELKKYMA 474
           Q+ D  + + ALE+M+  I+++TSSMT+VPKPLKFLRPHY T+   Y+  P  + K  +A
Sbjct: 48  QESDATLYKPALEAMKNSIKTSTSSMTAVPKPLKFLRPHYETMTKLYDEWPAGDDKSSLA 107

Query: 475 DILXGVALTMSAE 513
           D+L  + +T S E
Sbjct: 108 DVLSVIGMTYSDE 120

>RPN1_YEAST (P38764) 26S proteasome regulatory subunit RPN1 (Proteasome|
           non-ATPase subunit 1)
          Length = 992

 Score = 69.7 bits (169), Expect = 4e-12
 Identities = 34/79 (43%), Positives = 53/79 (67%)
 Frame = +1

Query: 271 LELYVVRAQDVDPGVQRLALESMRQEIRSATSSMTSVPKPLKFLRPHYGTLXTYYESMPE 450
           LEL V R ++ D  +   +L ++++ I+++TSSMT+VPKPLKFLRP Y  L + Y+   +
Sbjct: 48  LELLVERLKEDDSSLYEASLNALKESIKNSTSSMTAVPKPLKFLRPTYPDLCSIYDKWTD 107

Query: 451 SELKKYMADILXGVALTMS 507
             LK  +AD+L  +A+T S
Sbjct: 108 PNLKSSLADVLSILAMTYS 126

>RPN1_CANGA (Q6FPV6) 26S proteasome regulatory subunit RPN1|
          Length = 983

 Score = 60.1 bits (144), Expect = 3e-09
 Identities = 31/79 (39%), Positives = 48/79 (60%)
 Frame = +1

Query: 271 LELYVVRAQDVDPGVQRLALESMRQEIRSATSSMTSVPKPLKFLRPHYGTLXTYYESMPE 450
           LE+ V    + D  +    L  +++ I+++TSSMT+VPKPLKFLRP Y  L   Y+   +
Sbjct: 49  LEMLVQTLLEDDSKLYETTLTQLKEFIKNSTSSMTAVPKPLKFLRPFYPDLCKAYDKWSD 108

Query: 451 SELKKYMADILXGVALTMS 507
            + K  +AD+L  +A+T S
Sbjct: 109 KDQKSSLADMLSVLAMTYS 127

>PCY2_RAT (O88637) Ethanolamine-phosphate cytidylyltransferase (EC|
          2.7.7.14) (Phosphorylethanolamine transferase)
          (CTP:phosphoethanolamine cytidylyltransferase)
          Length = 404

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -3

Query: 94 IRFGDGAGGLARVRGASGTEATRRCCVGVY 5
          IR G GAGG A ++G  G    R  C G Y
Sbjct: 2  IRNGHGAGGAAGLKGPGGQRTVRVWCDGCY 31

>ELL2_HUMAN (O00472) RNA polymerase II elongation factor ELL2|
          Length = 640

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +3

Query: 12  PTQQRRVASVPLAPRTLASP-PAPSPNRIRPASH 110
           PT ++  A +PL P   A P P P P+   P SH
Sbjct: 354 PTSEKSAAGLPLPPAAAAIPTPPPLPSTYLPISH 387

>BAT2_RAT (Q6MG48) Large proline-rich protein BAT2 (HLA-B-associated transcript|
            2)
          Length = 2161

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 12   PTQQRRVASVPLAPRTLASPPAPSPNRIRPA 104
            P ++  +A VPLAP    +PP+P+P R   A
Sbjct: 1129 PPKEGVLAQVPLAPPQPGAPPSPAPARFSTA 1159

>DMF1_SCHPO (P78953) Division mal foutue 1 protein|
          Length = 920

 Score = 29.3 bits (64), Expect = 6.6
 Identities = 17/62 (27%), Positives = 30/62 (48%)
 Frame = +1

Query: 274 ELYVVRAQDVDPGVQRLALESMRQEIRSATSSMTSVPKPLKFLRPHYGTLXTYYESMPES 453
           ELY+  +++ +P +  +  +S++QE      S TS+PK     +  YG     Y  +P  
Sbjct: 357 ELYLQSSRNSEPEISTIINDSLQQENMDEDISATSIPKS----QAAYGHGSVTYHEVPRY 412

Query: 454 EL 459
            L
Sbjct: 413 NL 414

>YKY4_CAEEL (Q17963) Hypothetical WD-repeat protein C14B1.4|
          Length = 376

 Score = 28.9 bits (63), Expect = 8.6
 Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = +3

Query: 12  PTQQRRVASVPLAPRTLASPPAP--SPNRIRPAS 107
           PTQQ    +VP AP   +S PAP  SPN I P++
Sbjct: 15  PTQQIDQLTVPNAPDGGSSAPAPSTSPNSISPSN 48

>YACF_SHIFL (Q83MF4) UPF0289 protein yacF|
          Length = 247

 Score = 28.9 bits (63), Expect = 8.6
 Identities = 12/33 (36%), Positives = 23/33 (69%)
 Frame = +1

Query: 307 PGVQRLALESMRQEIRSATSSMTSVPKPLKFLR 405
           PGV +  +E++ Q++++A S + S P+  +FLR
Sbjct: 81  PGVDQSRIEALIQQLKAAVSVLISAPRIGQFLR 113

>AMIB_ECOLI (P26365) N-acetylmuramoyl-L-alanine amidase amiB precursor (EC|
           3.5.1.28)
          Length = 445

 Score = 28.9 bits (63), Expect = 8.6
 Identities = 20/67 (29%), Positives = 30/67 (44%)
 Frame = -1

Query: 480 YVSHVLL*LRFWHTFVVGXKGSIVWAEELQRLGDRRHRACS*TNLLPHALEGEPLHAGIH 301
           Y+S  +L L+F H+  VG   +     +LQR+G+   R               P HA + 
Sbjct: 324 YLSQAVLDLQFGHSQRVGYDVATSMISQLQRIGEIHKR--------------RPEHASLG 369

Query: 300 VLRPHDV 280
           VLR  D+
Sbjct: 370 VLRSPDI 376


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.312    0.129    0.359 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,243,436
Number of Sequences: 219361
Number of extensions: 593870
Number of successful extensions: 2020
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2016
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3812186532
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)