ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl20h12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC121777.3| Mus musculus BAC clone RP23-359A23 from chromosom... 44 0.29
2emb|CR848754.3| Zebrafish DNA sequence from clone CH211-162G12 i... 44 0.29
3emb|BX000987.6| Zebrafish DNA sequence from clone CH211-130P10 i... 44 0.29
4ref|XM_466673.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.1
5gb|AC161126.3| Pan troglodytes BAC clone CH251-595C13 from chrom... 42 1.1
6emb|AL162733.9| Human DNA sequence from clone RP11-397F23 on chr... 42 1.1
7dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
8dbj|AB205132.1| Scutellaria baicalensis cdka2 mRNA for cyclin-de... 42 1.1
9emb|AL954187.5| Zebrafish DNA sequence from clone CH211-69P5 in ... 42 1.1
10dbj|AP004063.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
11dbj|AK099736.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.1
12emb|AL136038.5|CNS01DVT Human chromosome 14 DNA sequence BAC C-2... 42 1.1
13gb|AY501390.1| Homo sapiens retinoic acid receptor beta 5 (RARB)... 40 4.5
14ref|NM_001034819.1| Gallus gallus bone morphogenetic protein 3 (... 40 4.5
15gb|BC030234.1| Homo sapiens retinoic acid receptor, beta, mRNA (... 40 4.5
16gb|AY731540.1| Arachis hypogaea clone PM723 microsatellite sequence 40 4.5
17gb|AC011705.11| Drosophila melanogaster clone BACR10C18, complet... 40 4.5
18gb|AC158214.4| Mus musculus chromosome 7, clone RP24-208N15, com... 40 4.5
19gb|AC101980.8| Mus musculus chromosome 7, clone RP24-339E15, com... 40 4.5
20gb|AY526428.1| Arachis hypogaea clone PM672 microsatellite sequence 40 4.5
21gb|BC050415.2| Homo sapiens retinoic acid receptor, beta, mRNA (... 40 4.5
22gb|AY046944.1| Mesocricetus auratus retinoic acid receptor beta-... 40 4.5
23gb|AC183921.2| Pan troglodytes BAC clone CH251-617M1 from chromo... 40 4.5
24gb|BC060794.1| Homo sapiens retinoic acid receptor, beta, transc... 40 4.5
25emb|CR735103.4| Zebrafish DNA sequence from clone CH211-13L14 in... 40 4.5
26emb|BX842612.10| Zebrafish DNA sequence from clone DKEY-5N18 in ... 40 4.5
27gb|DQ097308.1| Gallus gallus bone morphogenetic protein 3 precur... 40 4.5
28ref|NM_205080.1| Gallus gallus calpain 2, (m/II) large subunit (... 40 4.5
29gb|AC010653.10| Homo sapiens chromosome 16 clone RP11-417N10, co... 40 4.5
30gb|AC091211.3| Drosophila melanogaster 3L BAC RP98-26E12 (Roswel... 40 4.5
31emb|CR621137.1| full-length cDNA clone CS0DI008YJ13 of Placenta ... 40 4.5
32gb|AC093416.2| Homo sapiens chromosome 3 clone RP11-659P16, comp... 40 4.5
33ref|NM_016152.2| Homo sapiens retinoic acid receptor, beta (RARB... 40 4.5
34ref|NM_000965.2| Homo sapiens retinoic acid receptor, beta (RARB... 40 4.5
35gb|AC093157.2| Homo sapiens chromosome 1 clone RP11-421L21, comp... 40 4.5
36emb|CR536558.1| Homo sapiens full open reading frame cDNA clone ... 40 4.5
37gb|AC008338.7|AC008338 Drosophila melanogaster, chromosome X, re... 40 4.5
38tpg|BK005598.1| TPA: TPA_exp: Homo sapiens NSP (NSP) gene, compl... 40 4.5
39dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.5
40gb|AC010317.5| Homo sapiens chromosome 5 clone CTB-88J14, comple... 40 4.5
41gb|AF079317.1| Sphingomonas aromaticivorans plasmid pNL1, comple... 40 4.5
42gb|AC154799.3| Mus musculus BAC clone RP23-79K21 from chromosome... 40 4.5
43gb|AC009097.9| Homo sapiens chromosome 16 clone RP11-432I5, comp... 40 4.5
44gb|AC007963.7|AC007963 Homo sapiens chromosome 17, clone CTD-201... 40 4.5
45gb|AC026412.4| Homo sapiens chromosome 5 clone CTD-2012J19, comp... 40 4.5
46dbj|AP001081.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.5
47dbj|BA000004.3| Bacillus halodurans C-125 DNA, complete genome 40 4.5
48gb|AY893913.1| Synthetic construct Homo sapiens clone FLH127879.... 40 4.5
49gb|AY893467.1| Synthetic construct Homo sapiens clone FLH127785.... 40 4.5
50gb|AF466646.1| Zea mays putative transposase (Z195D10.1) gene, p... 40 4.5
51gb|AF157483.1|AF157483 Homo sapiens retinoic acid receptor beta ... 40 4.5
52gb|AC006958.1|AC006958 Homo sapiens chromosome 5q, Bac clone 32d... 40 4.5
53gb|AE003571.4| Drosophila melanogaster chromosome X, section 68 ... 40 4.5
54gb|AE003562.3| Drosophila melanogaster chromosome 3L, section 23... 40 4.5
55gb|AC004251.1|AC004251 Drosophila melanogaster (P1 DS08305 (D253... 40 4.5
56gb|AC133511.3| Mus musculus BAC clone RP23-413E2 from 10, comple... 40 4.5
57gb|AC153595.27| Mus musculus 6 BAC RP23-140J24 (Roswell Park Can... 40 4.5
58gb|AC153540.4| Mus musculus 10 BAC RP23-356N9 (Roswell Park Canc... 40 4.5
59gb|M96023.1|HUMRAR28 Human retinoic acid receptor beta gene, exo... 40 4.5
60emb|X07282.1|HSRARE Human mRNA for retinoic acid receptor-epsilo... 40 4.5
61emb|Y00291.1|HSHAPRA Human hap mRNA encoding a DNA-binding hormo... 40 4.5
62dbj|D38026.1|CHKMCL Chicken mRNA for m-calpain large subunit (mC... 40 4.5
63emb|AL607073.15| Mouse DNA sequence from clone RP23-321K1 on chr... 40 4.5 
>gb|AC121777.3| Mus musculus BAC clone RP23-359A23 from chromosome 16, complete
             sequence
          Length = 192846

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 306   gcttctcttctctgctttgctt 327
             ||||||||||||||||||||||
Sbjct: 91451 gcttctcttctctgctttgctt 91472
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>emb|CR848754.3| Zebrafish DNA sequence from clone CH211-162G12 in linkage group 15,
            complete sequence
          Length = 19365

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 66   tcttcctccagctctgctgtgt 87
            ||||||||||||||||||||||
Sbjct: 4386 tcttcctccagctctgctgtgt 4407
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>emb|BX000987.6| Zebrafish DNA sequence from clone CH211-130P10 in linkage group 15,
            complete sequence
          Length = 152072

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 66   tcttcctccagctctgctgtgt 87
            ||||||||||||||||||||||
Sbjct: 4383 tcttcctccagctctgctgtgt 4404
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>ref|XM_466673.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1442

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 114 agccagaggaggagggagccgcagc 138
           |||||||||||||||||| ||||||
Sbjct: 707 agccagaggaggagggagacgcagc 683
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>gb|AC161126.3| Pan troglodytes BAC clone CH251-595C13 from chromosome 7, complete
             sequence
          Length = 187683

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 303   gctgcttctcttctctgcttt 323
             |||||||||||||||||||||
Sbjct: 22427 gctgcttctcttctctgcttt 22407
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>emb|AL162733.9| Human DNA sequence from clone RP11-397F23 on chromosome 9 Contains the
             5'end of the protein tyrosine phosphatase (non-receptor
             type 3) gene, a novel pseudogene, apseudogene similar to
             mouse Ybox transcription factor and a CpG island, complete
             sequence
          Length = 189367

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 212   tgtgcctgtgcctgggctgggatga 236
             ||||||||||| |||||||||||||
Sbjct: 84840 tgtgcctgtgcttgggctgggatga 84816
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 114      agccagaggaggagggagccgcagc 138
                |||||||||||||||||| ||||||
Sbjct: 24021029 agccagaggaggagggagacgcagc 24021005
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>dbj|AB205132.1| Scutellaria baicalensis cdka2 mRNA for cyclin-dependent kinase A2,
           complete cds
          Length = 1226

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 33  ccccagcaaaaggattacggc 53
           |||||||||||||||||||||
Sbjct: 825 ccccagcaaaaggattacggc 845
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>emb|AL954187.5| Zebrafish DNA sequence from clone CH211-69P5 in linkage group 15,
             complete sequence
          Length = 185137

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 61    catcttcttcctccagctctg 81
             |||||||||||||||||||||
Sbjct: 44799 catcttcttcctccagctctg 44819
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>dbj|AP004063.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1476_F05
          Length = 125426

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 114   agccagaggaggagggagccgcagc 138
             |||||||||||||||||| ||||||
Sbjct: 56067 agccagaggaggagggagacgcagc 56043
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>dbj|AK099736.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013090G20, full
           insert sequence
          Length = 1443

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 114 agccagaggaggagggagccgcagc 138
           |||||||||||||||||| ||||||
Sbjct: 708 agccagaggaggagggagacgcagc 684
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>emb|AL136038.5|CNS01DVT Human chromosome 14 DNA sequence BAC C-2302E22 of library CalTech-D from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 151930

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 307    cttctcttctctgctttgctt 327
              |||||||||||||||||||||
Sbjct: 139940 cttctcttctctgctttgctt 139920
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>gb|AY501390.1| Homo sapiens retinoic acid receptor beta 5 (RARB) mRNA, complete cds
          Length = 2552

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 76   gctctgctgtgttcccactt 95
            ||||||||||||||||||||
Sbjct: 1180 gctctgctgtgttcccactt 1161
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>ref|NM_001034819.1| Gallus gallus bone morphogenetic protein 3 (BMP3), mRNA
          Length = 1411

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 211 ctgtgcctgtgcctgggctg 230
           ||||||||||||||||||||
Sbjct: 33  ctgtgcctgtgcctgggctg 52
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>gb|BC030234.1| Homo sapiens retinoic acid receptor, beta, mRNA (cDNA clone MGC:34062
            IMAGE:5229160), complete cds
          Length = 3141

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 76   gctctgctgtgttcccactt 95
            ||||||||||||||||||||
Sbjct: 1668 gctctgctgtgttcccactt 1649
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>gb|AY731540.1| Arachis hypogaea clone PM723 microsatellite sequence
          Length = 350

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 299 cctagctgcttctcttctct 318
           ||||||||||||||||||||
Sbjct: 248 cctagctgcttctcttctct 267
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>gb|AC011705.11| Drosophila melanogaster clone BACR10C18, complete sequence
          Length = 170975

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 2      tcaaaccgccccactccgct 21
              ||||||||||||||||||||
Sbjct: 159300 tcaaaccgccccactccgct 159281
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>gb|AC158214.4| Mus musculus chromosome 7, clone RP24-208N15, complete sequence
          Length = 175320

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 312   cttctctgctttgcttgcct 331
             ||||||||||||||||||||
Sbjct: 17159 cttctctgctttgcttgcct 17140
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>gb|AC101980.8| Mus musculus chromosome 7, clone RP24-339E15, complete sequence
          Length = 219739

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 312   cttctctgctttgcttgcct 331
             ||||||||||||||||||||
Sbjct: 54896 cttctctgctttgcttgcct 54915
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>gb|AY526428.1| Arachis hypogaea clone PM672 microsatellite sequence
          Length = 439

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 299 cctagctgcttctcttctct 318
           ||||||||||||||||||||
Sbjct: 283 cctagctgcttctcttctct 302
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>gb|BC050415.2| Homo sapiens retinoic acid receptor, beta, mRNA (cDNA clone
           IMAGE:6473008), partial cds
          Length = 2369

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 76  gctctgctgtgttcccactt 95
           ||||||||||||||||||||
Sbjct: 974 gctctgctgtgttcccactt 955
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>gb|AY046944.1| Mesocricetus auratus retinoic acid receptor beta-2 mRNA, complete cds
          Length = 2742

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 76   gctctgctgtgttcccactt 95
            ||||||||||||||||||||
Sbjct: 1750 gctctgctgtgttcccactt 1731
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>gb|AC183921.2| Pan troglodytes BAC clone CH251-617M1 from chromosome unknown, complete
              sequence
          Length = 188195

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 112    ggagccagaggaggagggag 131
              ||||||||||||||||||||
Sbjct: 153012 ggagccagaggaggagggag 152993
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>gb|BC060794.1| Homo sapiens retinoic acid receptor, beta, transcript variant 1, mRNA
            (cDNA clone MGC:71596 IMAGE:30341884), complete cds
          Length = 2828

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 76   gctctgctgtgttcccactt 95
            ||||||||||||||||||||
Sbjct: 1430 gctctgctgtgttcccactt 1411
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>emb|CR735103.4| Zebrafish DNA sequence from clone CH211-13L14 in linkage group 12,
              complete sequence
          Length = 126042

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 63     tcttcttcctccagctctgctgtg 86
              |||||||||||||| |||||||||
Sbjct: 105809 tcttcttcctccaggtctgctgtg 105832
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>emb|BX842612.10| Zebrafish DNA sequence from clone DKEY-5N18 in linkage group 20
             Contains the gene for a novel protein similar to human and
             mouse complement component 1, q subcomponent-like 1
             (C1QL1) and three CpG islands, complete sequence
          Length = 141139

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 179   tgaaacaaacaatggagtgaaggaagga 206
             |||||||||||| ||| |||||||||||
Sbjct: 98716 tgaaacaaacaaaggaatgaaggaagga 98689
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>gb|DQ097308.1| Gallus gallus bone morphogenetic protein 3 precursor (BMP3) mRNA,
           complete cds
          Length = 1411

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 211 ctgtgcctgtgcctgggctg 230
           ||||||||||||||||||||
Sbjct: 33  ctgtgcctgtgcctgggctg 52
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>ref|NM_205080.1| Gallus gallus calpain 2, (m/II) large subunit (CAPN2), mRNA
          Length = 2723

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 59   ctcatcttcttcctccagct 78
            ||||||||||||||||||||
Sbjct: 1188 ctcatcttcttcctccagct 1169
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>gb|AC010653.10| Homo sapiens chromosome 16 clone RP11-417N10, complete sequence
          Length = 184515

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 302    agctgcttctcttctctgct 321
              ||||||||||||||||||||
Sbjct: 163122 agctgcttctcttctctgct 163141
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>gb|AC091211.3| Drosophila melanogaster 3L BAC RP98-26E12 (Roswell Park Cancer
             Institute Drosophila BAC Library) complete sequence
          Length = 194589

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 171   gcatcggctgaaacaaacaa 190
             ||||||||||||||||||||
Sbjct: 62154 gcatcggctgaaacaaacaa 62135
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>emb|CR621137.1| full-length cDNA clone CS0DI008YJ13 of Placenta Cot 25-normalized of
            Homo sapiens (human)
          Length = 3044

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 76   gctctgctgtgttcccactt 95
            ||||||||||||||||||||
Sbjct: 1700 gctctgctgtgttcccactt 1681
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>gb|AC093416.2| Homo sapiens chromosome 3 clone RP11-659P16, complete sequence
          Length = 189308

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 76    gctctgctgtgttcccactt 95
             ||||||||||||||||||||
Sbjct: 96359 gctctgctgtgttcccactt 96340
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>ref|NM_016152.2| Homo sapiens retinoic acid receptor, beta (RARB), transcript variant
            2, mRNA
          Length = 2762

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 76   gctctgctgtgttcccactt 95
            ||||||||||||||||||||
Sbjct: 1390 gctctgctgtgttcccactt 1371
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>ref|NM_000965.2| Homo sapiens retinoic acid receptor, beta (RARB), transcript variant
            1, mRNA
          Length = 3119

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 76   gctctgctgtgttcccactt 95
            ||||||||||||||||||||
Sbjct: 1747 gctctgctgtgttcccactt 1728
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>gb|AC093157.2| Homo sapiens chromosome 1 clone RP11-421L21, complete sequence
          Length = 192589

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 112   ggagccagaggaggagggag 131
             ||||||||||||||||||||
Sbjct: 37927 ggagccagaggaggagggag 37908
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>emb|CR536558.1| Homo sapiens full open reading frame cDNA clone RZPDo834F1120D for
           gene RARB, retinoic acid receptor, beta; complete cds,
           incl. stopcodon
          Length = 1011

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 76  gctctgctgtgttcccactt 95
           ||||||||||||||||||||
Sbjct: 943 gctctgctgtgttcccactt 924
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>gb|AC008338.7|AC008338 Drosophila melanogaster, chromosome X, region 19C-19E, BAC clone
             BACR30J04, complete sequence
          Length = 177277

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 2     tcaaaccgccccactccgct 21
             ||||||||||||||||||||
Sbjct: 71234 tcaaaccgccccactccgct 71215
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>tpg|BK005598.1| TPA: TPA_exp: Homo sapiens NSP (NSP) gene, complete cds,
            alternatively spliced
          Length = 227735

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 63   tcttcttcctccagctctgc 82
            ||||||||||||||||||||
Sbjct: 3168 tcttcttcctccagctctgc 3187
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 16      tccgctgatttcttcctccc 35
               ||||||||||||||||||||
Sbjct: 9392067 tccgctgatttcttcctccc 9392086
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>gb|AC010317.5| Homo sapiens chromosome 5 clone CTB-88J14, complete sequence
          Length = 149115

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 112   ggagccagaggaggagggag 131
             ||||||||||||||||||||
Sbjct: 61997 ggagccagaggaggagggag 61978
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>gb|AF079317.1| Sphingomonas aromaticivorans plasmid pNL1, complete plasmid sequence
          Length = 184457

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 153   cccgctcgcggccgcagcgcatcg 176
             ||||||||||||||||||| ||||
Sbjct: 77592 cccgctcgcggccgcagcggatcg 77569
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>gb|AC154799.3| Mus musculus BAC clone RP23-79K21 from chromosome 13, complete sequence
          Length = 206997

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 112   ggagccagaggaggagggag 131
             ||||||||||||||||||||
Sbjct: 82957 ggagccagaggaggagggag 82976
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>gb|AC009097.9| Homo sapiens chromosome 16 clone RP11-432I5, complete sequence
          Length = 199471

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 302    agctgcttctcttctctgct 321
              ||||||||||||||||||||
Sbjct: 160198 agctgcttctcttctctgct 160179
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>gb|AC007963.7|AC007963 Homo sapiens chromosome 17, clone CTD-2010G8, complete sequence
          Length = 133488

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 63    tcttcttcctccagctctgc 82
             ||||||||||||||||||||
Sbjct: 53223 tcttcttcctccagctctgc 53242
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>gb|AC026412.4| Homo sapiens chromosome 5 clone CTD-2012J19, complete sequence
          Length = 128694

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 302   agctgcttctcttctctgct 321
             ||||||||||||||||||||
Sbjct: 95807 agctgcttctcttctctgct 95826
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>dbj|AP001081.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
             clone:P0693B08
          Length = 140812

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 16    tccgctgatttcttcctccc 35
             ||||||||||||||||||||
Sbjct: 62394 tccgctgatttcttcctccc 62413
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>dbj|BA000004.3| Bacillus halodurans C-125 DNA, complete genome
          Length = 4202352

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 27     cttcctccccagcaaaaggattac 50
              ||||||||||||||||| ||||||
Sbjct: 871898 cttcctccccagcaaaacgattac 871875
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>gb|AY893913.1| Synthetic construct Homo sapiens clone FLH127879.01L retinoic acid
           receptor beta (RARB) mRNA, partial cds
          Length = 1011

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 76  gctctgctgtgttcccactt 95
           ||||||||||||||||||||
Sbjct: 943 gctctgctgtgttcccactt 924
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>gb|AY893467.1| Synthetic construct Homo sapiens clone FLH127785.01X retinoic acid
           receptor beta (RARB) mRNA, complete cds
          Length = 1011

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 76  gctctgctgtgttcccactt 95
           ||||||||||||||||||||
Sbjct: 943 gctctgctgtgttcccactt 924
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>gb|AF466646.1| Zea mays putative transposase (Z195D10.1) gene, partial cds;
             glycyl-tRNA synthetase (Z195D10.2), ornithine
             carbamoyltransferase (Z195D10.3), putative gag protein
             (Z195D10.5), putative SET-domain transcriptional regulator
             (Z195D10.7), putative oxysterol-binding protein
             (Z195D10.8), putative polyprotein (Z195D10.9), putative
             oxysterol-binding protein (Z195D10.10), putative gag-pol
             polyprotein (Z195D10.11), putative
             phosphatidylinositol-4-phosphate-5-kinase (Z195D10.12),
             hypothetical protein (Z195D10.15), putative gag-pol
             polyprotein (Z195D10.16), putative polyprotein
             (Z195D10.17), putative retrotransposon protein
             (Z195D10.18), and prpol (Z195D10.19) genes, complete cds;
             and putative teosinte branched2 (Z195D10.20) gene, partial
             cds
          Length = 141939

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 189   aatggagtgaaggaaggatg 208
             ||||||||||||||||||||
Sbjct: 35232 aatggagtgaaggaaggatg 35213
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>gb|AF157483.1|AF157483 Homo sapiens retinoic acid receptor beta 4 (NR1B2) mRNA, complete cds
          Length = 1462

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 76   gctctgctgtgttcccactt 95
            ||||||||||||||||||||
Sbjct: 1390 gctctgctgtgttcccactt 1371
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>gb|AC006958.1|AC006958 Homo sapiens chromosome 5q, Bac clone 32d16 (LBNL h177), complete
             sequence
          Length = 77902

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 112   ggagccagaggaggagggag 131
             ||||||||||||||||||||
Sbjct: 13515 ggagccagaggaggagggag 13496
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>gb|AE003571.4| Drosophila melanogaster chromosome X, section 68 of 74 of the complete
             sequence
          Length = 302538

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 2     tcaaaccgccccactccgct 21
             ||||||||||||||||||||
Sbjct: 36531 tcaaaccgccccactccgct 36512
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>gb|AE003562.3| Drosophila melanogaster chromosome 3L, section 23 of 83 of the complete
              sequence
          Length = 255329

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 171    gcatcggctgaaacaaacaa 190
              ||||||||||||||||||||
Sbjct: 245013 gcatcggctgaaacaaacaa 244994
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>gb|AC004251.1|AC004251 Drosophila melanogaster (P1 DS08305 (D253)) DNA sequence, complete
             sequence
          Length = 83846

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 171   gcatcggctgaaacaaacaa 190
             ||||||||||||||||||||
Sbjct: 51671 gcatcggctgaaacaaacaa 51690
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>gb|AC133511.3| Mus musculus BAC clone RP23-413E2 from 10, complete sequence
          Length = 214377

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 61     catcttcttcctccagctct 80
              ||||||||||||||||||||
Sbjct: 191754 catcttcttcctccagctct 191735
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>gb|AC153595.27| Mus musculus 6 BAC RP23-140J24 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 225736

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 304   ctgcttctcttctctgctttgctt 327
             ||||| ||||||||||||||||||
Sbjct: 16238 ctgctcctcttctctgctttgctt 16215
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>gb|AC153540.4| Mus musculus 10 BAC RP23-356N9 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 198205

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 61     catcttcttcctccagctct 80
              ||||||||||||||||||||
Sbjct: 157993 catcttcttcctccagctct 158012
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>gb|M96023.1|HUMRAR28 Human retinoic acid receptor beta gene, exon E10
          Length = 1494

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 76  gctctgctgtgttcccactt 95
           ||||||||||||||||||||
Sbjct: 135 gctctgctgtgttcccactt 116
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>emb|X07282.1|HSRARE Human mRNA for retinoic acid receptor-epsilon protein
          Length = 1758

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 76   gctctgctgtgttcccactt 95
            ||||||||||||||||||||
Sbjct: 1622 gctctgctgtgttcccactt 1603
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>emb|Y00291.1|HSHAPRA Human hap mRNA encoding a DNA-binding hormone receptor
          Length = 2972

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 76   gctctgctgtgttcccactt 95
            ||||||||||||||||||||
Sbjct: 1600 gctctgctgtgttcccactt 1581
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>dbj|D38026.1|CHKMCL Chicken mRNA for m-calpain large subunit (mCL), complete cds
          Length = 2723

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 59   ctcatcttcttcctccagct 78
            ||||||||||||||||||||
Sbjct: 1188 ctcatcttcttcctccagct 1169
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>emb|AL607073.15| Mouse DNA sequence from clone RP23-321K1 on chromosome 4, complete
             sequence
          Length = 95219

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 314   tctctgctttgcttgcctcc 333
             ||||||||||||||||||||
Sbjct: 48725 tctctgctttgcttgcctcc 48706


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,322,143
Number of Sequences: 3902068
Number of extensions: 4322143
Number of successful extensions: 108145
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 107966
Number of HSP's gapped (non-prelim): 179
length of query: 342
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 320
effective length of database: 17,147,199,772
effective search space: 5487103927040
effective search space used: 5487103927040
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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