>RDRP_BDV (P52639) Large structural protein (L protein) (P180) [Includes:|
            RNA-directed RNA polymerase (EC 2.7.7.48); mRNA
            (guanine-N(7)-)-methyltransferase (EC 2.1.1.56); mRNA
            guanylyltransferase (EC 2.7.7.-)]
          Length = 1711

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -3

Query: 461  CTGLIFPRVDP*AALDLPSIASDTSTLSIRGDP 363
            C   I+P VDP  ALDL  + + T  L + GDP
Sbjct: 1467 CVLYIYPTVDPAVALDLCHLPALTIILVLGGDP 1499

>STRN_SORMA (Q70M86) Striatin Pro11|
          Length = 845

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -3

Query: 308 VSITTAWCHDPHSPRSKLKTSTWSPGRSFRSPAAATGDGW 189
           + +   + H  HS  + L  ++WSP  +F +   A GDGW
Sbjct: 476 LDVAADFTHRGHSG-AVLSLASWSPSPNFSTGGRAQGDGW 514

>ERA_HAEIN (P43728) GTP-binding protein era homolog|
          Length = 302

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 9/65 (13%)
 Frame = -2

Query: 390 LNSL-NKR*PAIIVINKID--------ISYRAEVVQSFNYNSLVP*SA*PSIKTEDLDVV 238
           LN L N + P ++ INK+D        + +  ++   FN+  +VP SA       +L+ +
Sbjct: 111 LNKLRNAKAPVVLAINKVDNIKNKDDLLPFITDLSSKFNFAHIVPISAQRGNNVHELEKI 170

Query: 237 ARKKL 223
            R+ L
Sbjct: 171 VRQSL 175

>PCDH9_HUMAN (Q9HC56) Protocadherin-9 precursor|
          Length = 1203

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
 Frame = +1

Query: 283 WHQAVVIETLDNFRSVRYVDFVDDNDGGSP-----LIERVEVSDAIDGKSSAAQG 432
           W Q +V + LD  +   YV  +   DGG+P      I +V VSD  D +    +G
Sbjct: 201 WPQLIVQQNLDREQKDTYVMKIKVEDGGTPQKSSTAILQVTVSDVNDNRPVFKEG 255

>OPGG_VIBCH (Q9KSG8) Glucans biosynthesis protein G precursor|
          Length = 545

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 20/64 (31%), Positives = 28/64 (43%)
 Frame = -3

Query: 425 AALDLPSIASDTSTLSIRGDPPSLSSTKSTYLTERKLSKVSITTAWCHDPHSPRSKLKTS 246
           A LD PS+ S     SIR    +    ++      +LSKV +  A     HSP  + KT 
Sbjct: 256 ALLDSPSV-SGAYRFSIRPGENTRMDVEAVLFPRVELSKVGLAPATSMFMHSPNGREKTD 314

Query: 245 TWSP 234
            + P
Sbjct: 315 DFRP 318

>ARI1B_HUMAN (Q8NFD5) AT-rich interactive domain-containing protein 1B (ARID|
            domain-containing protein 1B) (Osa homolog 2) (hOsa2)
            (p250R) (BRG1-binding protein hELD/OSA1) (BRG1-associated
            factor 250b) (BAF250B)
          Length = 2236

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 19/65 (29%), Positives = 30/65 (46%)
 Frame = +1

Query: 172  IPKRRRQPSPVAAAGERKLLPGDHVEVFSFDRGLCGSWHQAVVIETLDNFRSVRYVDFVD 351
            IP RRR P P+++AG +K   G         +G      +  +I T+D+  S R     +
Sbjct: 1827 IPPRRRPPPPLSSAGRKKEQEG---------KGDSEEQQEKSIIATIDDVLSARPGALPE 1877

Query: 352  DNDGG 366
            D + G
Sbjct: 1878 DANPG 1882


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,671,846
Number of Sequences: 219361
Number of extensions: 901587
Number of successful extensions: 3472
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3472
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3072927439
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)