>RP1L1_MOUSE (Q8CGM2) Retinitis pigmentosa 1-like 1 protein (Retinitis pigmentosa|
            1-like protein 1)
          Length = 1859

 Score = 32.3 bits (72), Expect = 0.63
 Identities = 18/67 (26%), Positives = 35/67 (52%)
 Frame = -1

Query: 466  THNLEPEQATRDLGRTMRGDHLTALHIHPWINQQRNGPRRRIESGSSEIDGRFDPIPSTG 287
            TH++E ++A+R+  + + G H       PW++   +  R   E+ S + +GR   + +  
Sbjct: 1693 THSVEIQEASRERQQEVEGRHQDVKEDSPWVSSGESQGRVGSENTSLDQEGR---LLNHH 1749

Query: 286  NQPAPQS 266
             +P PQS
Sbjct: 1750 QRPGPQS 1756

>PELI1_MOUSE (Q8C669) Protein pellino homolog 1 (Pellino-1)|
          Length = 418

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +2

Query: 68  AYPLQKISFLAPNQGPLVCCFRNYIHTHHHWSEQQEREGR 187
           A+P  K   +   + P V     ++H +H+W  ++ER+G+
Sbjct: 290 AFPSMKRKDVVDEKQPWVYLNCGHVHGYHNWGNKEERDGK 329

>PELI1_HUMAN (Q96FA3) Protein pellino homolog 1 (Pellino-1) (Pellino-related|
           intracellular signaling molecule)
          Length = 418

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +2

Query: 68  AYPLQKISFLAPNQGPLVCCFRNYIHTHHHWSEQQEREGR 187
           A+P  K   +   + P V     ++H +H+W  ++ER+G+
Sbjct: 290 AFPSMKRKDVVDEKQPWVYLNCGHVHGYHNWGNKEERDGK 329

>SPEG_BRARE (Q696W0) Striated muscle preferentially expressed protein kinase|
           (EC 2.7.11.1)
          Length = 2995

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 431 PRTNHARRSPHSPAYPSMD*SAAERPAPPNRI 336
           PRTN +R+ P SPA P +     + P  P R+
Sbjct: 492 PRTNVSRKWPKSPAQPMVKDGLVQAPQKPPRL 523

>TRI1_STRCO (Q9RDE2) Tricorn protease homolog 1 (EC 3.4.21.-)|
          Length = 1067

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +1

Query: 268 IEARVGSRWTESDRSGRQSRRTPIRFGGA 354
           + A  G  WT  D  G + RR  IR GGA
Sbjct: 249 VYASAGELWTLDDLDGAEPRRLDIRLGGA 277

>TIF1G_HUMAN (Q9UPN9) Transcription intermediary factor 1-gamma (TIF1-gamma)|
           (RET-fused gene 7 protein) (Rfg7 protein) (Tripartite
           motif protein 33)
          Length = 1127

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
 Frame = -2

Query: 396 PCISIHGLI----SSGTARAAESNRGPPRLTAASIRFRPPGTNP 277
           P +S+H       S  TA  A +NRGP   +  +I   P  TNP
Sbjct: 631 PVVSVHNTTINPTSPTTATMANANRGPTSPSVTAIELIPSVTNP 674

>TIF1G_MOUSE (Q99PP7) Transcription intermediary factor 1-gamma (TIF1-gamma)|
           (Tripartite motif protein 33)
          Length = 1142

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
 Frame = -2

Query: 396 PCISIHGLI---SSGTARAAESNRGPPRLTAASIRFRPPGTNP 277
           P +S H  I   S  TA  A +NRGP   +  +I   P  TNP
Sbjct: 647 PVVSAHNPINPTSPTTATMANANRGPTSPSVTAIELIPSVTNP 689

>FREA_HUMAN (O43638) Forkhead-related transcription factor 10 (FREAC-10)|
           (Forkhead-like 18 protein)
          Length = 330

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 20/40 (50%), Positives = 22/40 (55%)
 Frame = -3

Query: 371 SAAERPAPPNRIGVLRD*RPLRSDSVHREPTRASIAPGGF 252
           SAA  PAPP   G LR   PL +D  H+EP  A    GGF
Sbjct: 271 SAAPSPAPPTPPGSLRAPLPLPTD--HKEPWVA----GGF 304

>PCF11_HUMAN (O94913) Pre-mRNA cleavage complex 2 protein Pcf11 (Pre-mRNA cleavage|
            complex II protein Pcf11) (Fragment)
          Length = 1654

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +2

Query: 284  VPGGRNRIEAAVNLGGPRFD 343
            VPGG  RIE  +  GGPRF+
Sbjct: 1112 VPGGGLRIEGPLGQGGPRFE 1131


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,309,372
Number of Sequences: 219361
Number of extensions: 1107156
Number of successful extensions: 3410
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3392
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3072927439
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)