Clone Name | bastl20g12 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | IF41_WHEAT (Q03387) Eukaryotic initiation factor iso-4F subunit ... | 111 | 5e-25 | 2 | PIN3A_ORYSA (Q5VP70) Probable auxin efflux carrier component 3a ... | 28 | 7.6 |
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>IF41_WHEAT (Q03387) Eukaryotic initiation factor iso-4F subunit p82-34| (eIF-(iso)4F p82-34) Length = 788 Score = 111 bits (277), Expect = 5e-25 Identities = 57/85 (67%), Positives = 61/85 (71%) Frame = +3 Query: 63 MTTDQPVISLXXXXXXXXXXXXXLXXXXXXXXXXGSGDFLRPHGGGASGVSRIGDLHFET 242 MTTDQPVISL L GSGDFLRPHGGGASGVSRIGDLH E+ Sbjct: 1 MTTDQPVISLRPGGGGGGPRGGRLFAPAFAVAASGSGDFLRPHGGGASGVSRIGDLHSES 60 Query: 243 RERIRYSRDQLLDLRKITDISEQIL 317 RER+RYSRDQLLDLRKITD++EQIL Sbjct: 61 RERVRYSRDQLLDLRKITDVTEQIL 85
>PIN3A_ORYSA (Q5VP70) Probable auxin efflux carrier component 3a (OsPIN3a)| Length = 618 Score = 27.7 bits (60), Expect = 7.6 Identities = 11/18 (61%), Positives = 15/18 (83%) Frame = -1 Query: 81 LAGLSSWLRVPNPTKAPR 28 LAGL++W R+P+ T APR Sbjct: 83 LAGLAAWSRLPSRTGAPR 100 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 31,565,048 Number of Sequences: 219361 Number of extensions: 349980 Number of successful extensions: 1436 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 1416 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1435 length of database: 80,573,946 effective HSP length: 81 effective length of database: 62,805,705 effective search space used: 1507336920 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)