ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl20g12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1IF41_WHEAT (Q03387) Eukaryotic initiation factor iso-4F subunit ... 111 5e-25
2PIN3A_ORYSA (Q5VP70) Probable auxin efflux carrier component 3a ... 28 7.6

>IF41_WHEAT (Q03387) Eukaryotic initiation factor iso-4F subunit p82-34|
           (eIF-(iso)4F p82-34)
          Length = 788

 Score =  111 bits (277), Expect = 5e-25
 Identities = 57/85 (67%), Positives = 61/85 (71%)
 Frame = +3

Query: 63  MTTDQPVISLXXXXXXXXXXXXXLXXXXXXXXXXGSGDFLRPHGGGASGVSRIGDLHFET 242
           MTTDQPVISL             L          GSGDFLRPHGGGASGVSRIGDLH E+
Sbjct: 1   MTTDQPVISLRPGGGGGGPRGGRLFAPAFAVAASGSGDFLRPHGGGASGVSRIGDLHSES 60

Query: 243 RERIRYSRDQLLDLRKITDISEQIL 317
           RER+RYSRDQLLDLRKITD++EQIL
Sbjct: 61  RERVRYSRDQLLDLRKITDVTEQIL 85



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>PIN3A_ORYSA (Q5VP70) Probable auxin efflux carrier component 3a (OsPIN3a)|
          Length = 618

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = -1

Query: 81  LAGLSSWLRVPNPTKAPR 28
           LAGL++W R+P+ T APR
Sbjct: 83  LAGLAAWSRLPSRTGAPR 100


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,565,048
Number of Sequences: 219361
Number of extensions: 349980
Number of successful extensions: 1436
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1435
length of database: 80,573,946
effective HSP length: 81
effective length of database: 62,805,705
effective search space used: 1507336920
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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