>PHC3_MOUSE (Q8CHP6) Polyhomeotic-like protein 3|
          Length = 981

 Score = 31.2 bits (69), Expect = 0.68
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
 Frame = -1

Query: 309 RVPHHQLLISRYHSLVL-----TRSRPHPPQSHCLPVPKN 205
           +V HHQLL+ +    +      + S+  PP  HC+P+P +
Sbjct: 316 KVSHHQLLLQQQQQQIQPITLQSPSQDPPPSQHCIPLPNH 355

>MCM7_XENLA (Q91876) DNA replication licensing factor MCM7 (CDC47 homolog)|
           (x.MCM7)
          Length = 720

 Score = 30.8 bits (68), Expect = 0.89
 Identities = 16/37 (43%), Positives = 23/37 (62%)
 Frame = +3

Query: 99  NSPFSAGSEPHPLHGRDSSLKTVEGNLQAAAAMASRF 209
           N+  S  +  +P +GR +  KTVE N+Q  AA+ SRF
Sbjct: 478 NARCSILAAANPAYGRYNPKKTVEQNIQLPAALLSRF 514

>RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protein type 3|
          Length = 1333

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -1

Query: 294  QLLISRYHSLVLTRSRPHPPQSHCLPVPKNETPW 193
            Q  +   H+  + +SR H P     P+P +E PW
Sbjct: 951  QEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPW 984

>RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protein type 2|
          Length = 1333

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -1

Query: 294  QLLISRYHSLVLTRSRPHPPQSHCLPVPKNETPW 193
            Q  +   H+  + +SR H P     P+P +E PW
Sbjct: 951  QEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPW 984

>RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protein type 1|
          Length = 1333

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -1

Query: 294  QLLISRYHSLVLTRSRPHPPQSHCLPVPKNETPW 193
            Q  +   H+  + +SR H P     P+P +E PW
Sbjct: 951  QEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPW 984

>SYH_PORPU (P51348) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA|
           ligase) (HisRS)
          Length = 430

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
 Frame = +1

Query: 160 RQLKVIYKQQQPWRLVFGD----RETVTLRRMWTRSSQNKGVIARNQKL 294
           +QLK  +K++    L+ GD    +ET+T++ M+T+  +N  +I    K+
Sbjct: 366 KQLKQAHKKRAIACLILGDNEIQQETITIKWMYTQEQENMSIIEFKNKI 414

>POLR_OYMV (P20127) RNA replicase polyprotein (EC 2.7.7.48)|
          Length = 1776

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 16/48 (33%)
 Frame = -1

Query: 303 PHHQLLISRY------HSLVLTRSRPHPPQS----------HCLPVPK 208
           PH  L +S+       HSL++TR  PH P S          +CLP+P+
Sbjct: 227 PHLNLSVSKLESWGPVHSLLITRGLPHLPSSEKQQVSFHIPNCLPLPE 274

>RAPH1_HUMAN (Q70E73) Ras-associated and pleckstrin homology domains-containing|
            protein 1 (RAPH1) (Lamellipodin) (Proline-rich EVH1
            ligand 2) (PREL-2) (Protein RMO1) (Amyotrophic lateral
            sclerosis 2 chromosomal region candidate 9 gene protein)
          Length = 1302

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 16/57 (28%), Positives = 22/57 (38%)
 Frame = +3

Query: 3    PPLCTPPVPQHPPSTSAVSXXXXXXXXXXXXSNSPFSAGSEPHPLHGRDSSLKTVEG 173
            PP    P P  PP  +A              S +    G +P P   R+SS+K+  G
Sbjct: 982  PPPSPVPAPPPPPPPTASPTPDKSGSPGKKTSKTSSPGGKKPPPTPQRNSSIKSSSG 1038

>TERM_ADE40 (P48313) DNA terminal protein (Bellett protein) (pTP protein)|
          Length = 646

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 15/33 (45%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
 Frame = +2

Query: 2   ASALHAAGPSTPSIH--VRCQPLSARPHPSTPP 94
           AS L A     P +H  V   PL A PHP  PP
Sbjct: 606 ASQLRAQHQPLPELHADVPLPPLQANPHPPLPP 638

>HEMA_CVMA5 (P31615) Hemagglutinin-esterase precursor (EC 3.1.1.53) (HE) (E3|
           glycoprotein)
          Length = 428

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = -3

Query: 211 QKRDAMAAAACKLPSTVFKLESRPWSG*GSDPAENGE 101
           ++ D M AAAC+LP   F+  S  +SG G+  A +G+
Sbjct: 309 RQSDNMTAAACQLPYCFFRNTSANYSG-GTHDAHHGD 344

>HRG_RABIT (Q28640) Histidine-rich glycoprotein precursor|
           (Histidine-proline-rich glycoprotein) (HPRG) (Fragment)
          Length = 526

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -1

Query: 315 THRVPHHQLLISRYHSLVLTRSRPHPPQSH 226
           THR PHH++ ++  H        PH P  H
Sbjct: 312 THRFPHHRISVNIIHRPPPHGHHPHGPPPH 341

>YT32_STRFR (P20185) Hypothetical 32.6 kDa protein in transposon Tn4556|
          Length = 305

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +2

Query: 14  HAAGPSTPSIHVRCQPLSARPHPSTPP 94
           H AGPS  S+H +   L  RP    PP
Sbjct: 111 HLAGPSAVSVHDQADVLGQRPRCRLPP 137

>PHC3_HUMAN (Q8NDX5) Polyhomeotic-like protein 3 (hPH3) (Homolog of|
           polyhomeotic 3) (Early development regulatory protein 3)
          Length = 983

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
 Frame = -1

Query: 309 RVPHHQLLISRYHS----LVLTRSRPHPPQS-HCLPVPKNETP 196
           +V HHQL++ +       + L  S   PP S HC+P+  +  P
Sbjct: 319 KVSHHQLILQQQQQQIQPITLQNSTQDPPPSQHCIPLQNHGLP 361

>EXTN_TOBAC (P13983) Extensin precursor (Cell wall hydroxyproline-rich|
           glycoprotein)
          Length = 620

 Score = 24.3 bits (51), Expect(2) = 7.2
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +1

Query: 40  HPRPLSAAERAAAPVYSAAPILRSP 114
           HP P + A+    P+YS +P ++ P
Sbjct: 177 HPPPPTYAQPPPTPIYSPSPQVQPP 201



 Score = 21.9 bits (45), Expect(2) = 7.2
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +3

Query: 15  TPPVPQHPPS 44
           TPP  QHPPS
Sbjct: 156 TPPRGQHPPS 165

>BTBD7_HUMAN (Q9P203) BTB/POZ domain-containing protein 7|
          Length = 1132

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +3

Query: 3   PPLCTPPVPQHPPST 47
           PPL  PP P HPP+T
Sbjct: 756 PPLPPPPPPYHPPAT 770

>BTBD7_MOUSE (Q8CFE5) BTB/POZ domain-containing protein 7|
          Length = 1130

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +3

Query: 3   PPLCTPPVPQHPPST 47
           PPL  PP P HPP+T
Sbjct: 756 PPLPPPPPPYHPPAT 770

>PALH_NEUCR (Q7RY98) pH-response regulator protein palH/rim-21|
          Length = 778

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +3

Query: 267 GSDSEKSEAGDGGRDG 314
           GSDS+ +E+G GG+DG
Sbjct: 411 GSDSQDTESGGGGKDG 426

>CT055_HUMAN (Q9BQ89) Protein C20orf55|
          Length = 295

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 24/73 (32%), Positives = 27/73 (36%), Gaps = 3/73 (4%)
 Frame = +3

Query: 3   PPLCTPPVPQHPPSTSAVSXXXXXXXXXXXXSNSPF---SAGSEPHPLHGRDSSLKTVEG 173
           PP  TPP P  PPSTSAV                P    +A S P    G   S   +  
Sbjct: 136 PPPATPPRP--PPSTSAVRRVDVRPLPASPARPCPSPGPAAASSPARPPGLQRSKSDLSE 193

Query: 174 NLQAAAAMASRFW 212
               AAA   RF+
Sbjct: 194 RFSRAAADLERFF 206


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,513,455
Number of Sequences: 219361
Number of extensions: 727459
Number of successful extensions: 2964
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 2700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2957
length of database: 80,573,946
effective HSP length: 83
effective length of database: 62,366,983
effective search space used: 1496807592
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)