ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl20g11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_506148.1| PREDICTED Oryza sativa (japonica cultivar-group... 88 2e-14
2ref|XM_476451.1| Oryza sativa (japonica cultivar-group), mRNA 88 2e-14
3dbj|AK101000.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 2e-14
4dbj|AK070529.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 2e-14
5ref|XM_463934.1| Oryza sativa (japonica cultivar-group), mRNA 74 3e-10
6dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 54 3e-04
7dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 54 3e-04
8dbj|AP004885.3| Oryza sativa (japonica cultivar-group) genomic D... 54 3e-04
9dbj|AP005309.5| Oryza sativa (japonica cultivar-group) genomic D... 54 3e-04
10ref|XM_534039.2| PREDICTED: Canis familiaris similar to T07A9.8 ... 46 0.069
11gb|AC120003.6| Mus musculus chromosome 8, clone RP24-148H22, com... 42 1.1
12ref|XM_387563.1| Gibberella zeae PH-1 chromosome 4 hypothetical ... 40 4.3
13ref|XM_789719.1| PREDICTED: Strongylocentrotus purpuratus hypoth... 40 4.3
14gb|AF369906.1| Sorghum bicolor clone BAC10J22 Sbb3766 sequence 40 4.3
15emb|AL929577.9| Mouse DNA sequence from clone RP23-455B1 on chro... 40 4.3
16dbj|AB025195.1| Brevibacterium fuscum var. dextranlyticum dexG g... 40 4.3 
>ref|XM_506148.1| PREDICTED Oryza sativa (japonica cultivar-group), P0474G09.102 mRNA
          Length = 3214

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 83/96 (86%)
 Strand = Plus / Plus

                                                                       
Query: 185 agcagcagccatggcgtctcgtttttggggacagggagacagtgactctgaggaggatgt 244
           ||||||||||||||| || ||||||||||||||||||||||| ||||| |||||||| | 
Sbjct: 155 agcagcagccatggcatcccgtttttggggacagggagacagcgactccgaggaggagga 214

                                               
Query: 245 ggacgagatcgagtcagaacaagggagtgatagcga 280
           | | ||||| |||||||||  ||| ||||| |||||
Sbjct: 215 gcaggagattgagtcagaagcaggaagtgaaagcga 250
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>ref|XM_476451.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3207

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 83/96 (86%)
 Strand = Plus / Plus

                                                                       
Query: 185 agcagcagccatggcgtctcgtttttggggacagggagacagtgactctgaggaggatgt 244
           ||||||||||||||| || ||||||||||||||||||||||| ||||| |||||||| | 
Sbjct: 148 agcagcagccatggcatcccgtttttggggacagggagacagcgactccgaggaggagga 207

                                               
Query: 245 ggacgagatcgagtcagaacaagggagtgatagcga 280
           | | ||||| |||||||||  ||| ||||| |||||
Sbjct: 208 gcaggagattgagtcagaagcaggaagtgaaagcga 243
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>dbj|AK101000.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023147D18, full
           insert sequence
          Length = 3206

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 83/96 (86%)
 Strand = Plus / Plus

                                                                       
Query: 185 agcagcagccatggcgtctcgtttttggggacagggagacagtgactctgaggaggatgt 244
           ||||||||||||||| || ||||||||||||||||||||||| ||||| |||||||| | 
Sbjct: 147 agcagcagccatggcatcccgtttttggggacagggagacagcgactccgaggaggagga 206

                                               
Query: 245 ggacgagatcgagtcagaacaagggagtgatagcga 280
           | | ||||| |||||||||  ||| ||||| |||||
Sbjct: 207 gcaggagattgagtcagaagcaggaagtgaaagcga 242
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>dbj|AK070529.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023060K11, full
           insert sequence
          Length = 3214

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 83/96 (86%)
 Strand = Plus / Plus

                                                                       
Query: 185 agcagcagccatggcgtctcgtttttggggacagggagacagtgactctgaggaggatgt 244
           ||||||||||||||| || ||||||||||||||||||||||| ||||| |||||||| | 
Sbjct: 155 agcagcagccatggcatcccgtttttggggacagggagacagcgactccgaggaggagga 214

                                               
Query: 245 ggacgagatcgagtcagaacaagggagtgatagcga 280
           | | ||||| |||||||||  ||| ||||| |||||
Sbjct: 215 gcaggagattgagtcagaagcaggaagtgaaagcga 250
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>ref|XM_463934.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2784

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 61/69 (88%)
 Strand = Plus / Plus

                                                                       
Query: 195 atggcgtctcgtttttggggacagggagacagtgactctgaggaggatgtggacgagatc 254
           ||||| |||||||| ||||||||||||||||| |||||||||||||| | | | ||||| 
Sbjct: 1   atggcatctcgtttctggggacagggagacagcgactctgaggaggaggagcaggagatt 60

                    
Query: 255 gagtcagaa 263
           |||||||||
Sbjct: 61  gagtcagaa 69
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                                  
Query: 185     agcagcagccatggcgtctcgtttttggggacagg 219
               ||||||||||||||| || ||||||||||||||||
Sbjct: 1274167 agcagcagccatggcatcccgtttttggggacagg 1274201



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 54/65 (83%)
 Strand = Plus / Plus

                                                                           
Query: 216     cagggagacagtgactctgaggaggatgtggacgagatcgagtcagaacaagggagtgat 275
               ||||||||||| ||||| |||||||| | | | ||||| |||||||||  ||| ||||| 
Sbjct: 1274332 cagggagacagcgactccgaggaggaggagcaggagattgagtcagaagcaggaagtgaa 1274391

                    
Query: 276     agcga 280
               |||||
Sbjct: 1274392 agcga 1274396
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                                  
Query: 185     agcagcagccatggcgtctcgtttttggggacagg 219
               ||||||||||||||| |||||||| ||||||||||
Sbjct: 1219296 agcagcagccatggcatctcgtttctggggacagg 1219330



 Score = 48.1 bits (24), Expect = 0.018
 Identities = 42/48 (87%)
 Strand = Plus / Plus

                                                               
Query: 216     cagggagacagtgactctgaggaggatgtggacgagatcgagtcagaa 263
               ||||||||||| |||||||||||||| | | | ||||| |||||||||
Sbjct: 1219453 cagggagacagcgactctgaggaggaggagcaggagattgagtcagaa 1219500
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>dbj|AP004885.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0575F10
          Length = 150462

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                                
Query: 185   agcagcagccatggcgtctcgtttttggggacagg 219
             ||||||||||||||| |||||||| ||||||||||
Sbjct: 50387 agcagcagccatggcatctcgtttctggggacagg 50421



 Score = 48.1 bits (24), Expect = 0.018
 Identities = 42/48 (87%)
 Strand = Plus / Plus

                                                             
Query: 216   cagggagacagtgactctgaggaggatgtggacgagatcgagtcagaa 263
             ||||||||||| |||||||||||||| | | | ||||| |||||||||
Sbjct: 50544 cagggagacagcgactctgaggaggaggagcaggagattgagtcagaa 50591
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>dbj|AP005309.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0474G09
          Length = 169511

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                                
Query: 185   agcagcagccatggcgtctcgtttttggggacagg 219
             ||||||||||||||| || ||||||||||||||||
Sbjct: 39002 agcagcagccatggcatcccgtttttggggacagg 39036



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 54/65 (83%)
 Strand = Plus / Plus

                                                                         
Query: 216   cagggagacagtgactctgaggaggatgtggacgagatcgagtcagaacaagggagtgat 275
             ||||||||||| ||||| |||||||| | | | ||||| |||||||||  ||| ||||| 
Sbjct: 39167 cagggagacagcgactccgaggaggaggagcaggagattgagtcagaagcaggaagtgaa 39226

                  
Query: 276   agcga 280
             |||||
Sbjct: 39227 agcga 39231
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>ref|XM_534039.2| PREDICTED: Canis familiaris similar to T07A9.8 (LOC476835), mRNA
          Length = 1845

 Score = 46.1 bits (23), Expect = 0.069
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 224 cagtgactctgaggaggatgtgg 246
           |||||||||||||||||||||||
Sbjct: 627 cagtgactctgaggaggatgtgg 649
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>gb|AC120003.6| Mus musculus chromosome 8, clone RP24-148H22, complete sequence
          Length = 210466

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 282   aaatcagaagctggtgatggg 302
             |||||||||||||||||||||
Sbjct: 65576 aaatcagaagctggtgatggg 65556
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>ref|XM_387563.1| Gibberella zeae PH-1 chromosome 4 hypothetical protein (FG07387.1)
            partial mRNA
          Length = 3177

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 181  aagcagcagcagccatggcgtctc 204
            ||||||||||||||||||| ||||
Sbjct: 2980 aagcagcagcagccatggcatctc 2957
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>ref|XM_789719.1| PREDICTED: Strongylocentrotus purpuratus hypothetical protein
           LOC590102 (LOC590102), partial mRNA
          Length = 3638

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 234 gaggaggatgtggacgagatcgag 257
           |||||||||| |||||||||||||
Sbjct: 739 gaggaggatgaggacgagatcgag 762
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>gb|AF369906.1| Sorghum bicolor clone BAC10J22 Sbb3766 sequence
          Length = 152439

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 180   caagcagcagcagccatggc 199
             ||||||||||||||||||||
Sbjct: 80985 caagcagcagcagccatggc 81004
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>emb|AL929577.9| Mouse DNA sequence from clone RP23-455B1 on chromosome 4, complete
              sequence
          Length = 152910

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 180    caagcagcagcagccatggc 199
              ||||||||||||||||||||
Sbjct: 145042 caagcagcagcagccatggc 145061
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>dbj|AB025195.1| Brevibacterium fuscum var. dextranlyticum dexG gene, dexT gene for
            isomaltotrio-dextranase precusor and tnpA gene, partial
            and complete cds
          Length = 4506

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 117  ggatctgaacctcatccgct 136
            ||||||||||||||||||||
Sbjct: 1829 ggatctgaacctcatccgct 1810


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,818,926
Number of Sequences: 3902068
Number of extensions: 2818926
Number of successful extensions: 57567
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57477
Number of HSP's gapped (non-prelim): 90
length of query: 324
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 302
effective length of database: 17,147,199,772
effective search space: 5178454331144
effective search space used: 5178454331144
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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