ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl20g10 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BC105395.1| Bos taurus similar to serologically defined colon cancer antigen 3, mRNA (cDNA clone MGC:128414 IMAGE:7958943), complete cds Length = 2189 Score = 46.1 bits (23), Expect = 0.098 Identities = 23/23 (100%) Strand = Plus / Plus Query: 298 aggatgaggatgaggaggacggg 320 ||||||||||||||||||||||| Sbjct: 456 aggatgaggatgaggaggacggg 478
>gb|AC084555.1|CBRG35B19 Caenorhabditis briggsae cosmid G35B19, complete sequence Length = 43006 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 299 ggatgaggatgaggaggacggg 320 |||||||||||||||||||||| Sbjct: 7509 ggatgaggatgaggaggacggg 7488
>gb|AC140361.2| Mus musculus BAC clone RP24-247B3 from chromosome 17, complete sequence Length = 157937 Score = 44.1 bits (22), Expect = 0.39 Identities = 28/30 (93%) Strand = Plus / Minus Query: 340 tggaggagaaggagggggcggacgaggact 369 |||||||||||||||||| ||| ||||||| Sbjct: 82117 tggaggagaaggagggggaggaagaggact 82088
>ref|NM_184180.1| Oryza sativa (japonica cultivar-group), mRNA Length = 960 Score = 42.1 bits (21), Expect = 1.5 Identities = 30/33 (90%) Strand = Plus / Plus Query: 298 aggatgaggatgaggaggacgggagcgaggacg 330 |||||||||||||||| |||| |||||| |||| Sbjct: 914 aggatgaggatgaggatgacgagagcgacgacg 946
>ref|XM_630948.1| Dictyostelium discoideum hypothetical protein (DDB0219496), partial mRNA Length = 2601 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 298 aggatgaggatgaggaggacg 318 ||||||||||||||||||||| Sbjct: 2204 aggatgaggatgaggaggacg 2224
>gb|AC168852.2| Mus musculus BAC clone RP24-191L21 from chromosome 6, complete sequence Length = 171677 Score = 42.1 bits (21), Expect = 1.5 Identities = 30/33 (90%) Strand = Plus / Plus Query: 335 gctcctggaggagaaggagggggcggacgagga 367 |||||||||||||||||||| || ||| ||||| Sbjct: 161416 gctcctggaggagaaggaggaggaggaggagga 161448
>ref|NM_174000.2| Bos taurus calreticulin (CALR), mRNA Length = 1930 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 296 caaggatgaggatgaggagga 316 ||||||||||||||||||||| Sbjct: 1237 caaggatgaggatgaggagga 1257
>gb|DP000016.1| Pan troglodytes target 1 genomic scaffold Length = 1623484 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 63 actccctccgccccttcccac 83 ||||||||||||||||||||| Sbjct: 539951 actccctccgccccttcccac 539931
>gb|DP000013.1| Otolemur garnettii target 1 genomic scaffold Length = 1743090 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 64 ctccctccgccccttcccacc 84 ||||||||||||||||||||| Sbjct: 547307 ctccctccgccccttcccacc 547287
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 322 gcgaggacgcgccgctcctggagga 346 |||||||||||||||||||| |||| Sbjct: 1800744 gcgaggacgcgccgctcctgaagga 1800768
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 397 cgaagaggaaggcgccgcgct 417 ||||||||||||||||||||| Sbjct: 817236 cgaagaggaaggcgccgcgct 817256
>gb|AC148008.2| Mus musculus BAC clone RP23-253C14 from chromosome 18, complete sequence Length = 161965 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 298 aggatgaggatgaggaggacg 318 ||||||||||||||||||||| Sbjct: 50054 aggatgaggatgaggaggacg 50074
>ref|XM_710631.1| Candida albicans SC5314 hypothetical protein (CaO19_1961), mRNA Length = 1593 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 298 aggatgaggatgaggaggacg 318 ||||||||||||||||||||| Sbjct: 443 aggatgaggatgaggaggacg 463
>gb|AC087253.2| Pan troglodytes clone RP43-150N20, complete sequence Length = 126559 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 63 actccctccgccccttcccac 83 ||||||||||||||||||||| Sbjct: 83171 actccctccgccccttcccac 83151
>gb|AC144794.2| Mus musculus BAC clone RP24-463B6 from chromosome 18, complete sequence Length = 152588 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 298 aggatgaggatgaggaggacg 318 ||||||||||||||||||||| Sbjct: 127791 aggatgaggatgaggaggacg 127811
>gb|AC087843.2| Bos taurus clone RP42-550C12, complete sequence Length = 157165 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 64 ctccctccgccccttcccacc 84 ||||||||||||||||||||| Sbjct: 100104 ctccctccgccccttcccacc 100084
>gb|AC161111.2| Mus musculus chromosome 15, clone RP23-50B6, complete sequence Length = 200074 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 297 aaggatgaggatgaggaggac 317 ||||||||||||||||||||| Sbjct: 149393 aaggatgaggatgaggaggac 149413
>ref|XR_004360.1| PREDICTED: Mus musculus similar to High mobility group protein 4 (HMG-4) (High mobility group protein 2a) (HMG-2a) (LOC436189), mRNA Length = 597 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 385 agaggagggggacgaagagga 405 ||||||||||||||||||||| Sbjct: 537 agaggagggggacgaagagga 557
>ref|NM_176662.1| Bos taurus protein kinase C substrate 80K-H (PRKCSH), mRNA Length = 2099 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 298 aggatgaggatgaggaggacg 318 ||||||||||||||||||||| Sbjct: 1122 aggatgaggatgaggaggacg 1142
>gb|DP000008.1| Bos taurus target 1 genomic scaffold Length = 2072671 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 64 ctccctccgccccttcccacc 84 ||||||||||||||||||||| Sbjct: 542949 ctccctccgccccttcccacc 542929
>gb|AF299077.1| Bos taurus vacuolar system associated protein-60 (VASAP-60) gene, promoter region and complete cds Length = 14392 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 298 aggatgaggatgaggaggacg 318 ||||||||||||||||||||| Sbjct: 12025 aggatgaggatgaggaggacg 12045
>emb|Z26936.1|HSMETROP H.sapiens MET gene promoter Length = 697 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 63 actccctccgccccttcccac 83 ||||||||||||||||||||| Sbjct: 467 actccctccgccccttcccac 447
>gb|AC121593.3| Mus musculus BAC clone RP23-292N18 from 6, complete sequence Length = 179881 Score = 42.1 bits (21), Expect = 1.5 Identities = 30/33 (90%) Strand = Plus / Minus Query: 335 gctcctggaggagaaggagggggcggacgagga 367 |||||||||||||||||||| || ||| ||||| Sbjct: 163915 gctcctggaggagaaggaggaggaggaggagga 163883
>emb|CR956433.5| Pig DNA sequence from clone CH242-96L23 on chromosome 7, complete sequence Length = 81700 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 386 gaggagggggacgaagaggaa 406 ||||||||||||||||||||| Sbjct: 6475 gaggagggggacgaagaggaa 6455
>gb|U49178.2|BTU49178 Bos taurus vacuolar system associated protein-60 mRNA, complete cds Length = 2099 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 298 aggatgaggatgaggaggacg 318 ||||||||||||||||||||| Sbjct: 1122 aggatgaggatgaggaggacg 1142
>gb|AC142342.1| Pan troglodytes BAC clone RP43-45D19 from 7, complete sequence Length = 171571 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 63 actccctccgccccttcccac 83 ||||||||||||||||||||| Sbjct: 96376 actccctccgccccttcccac 96396
>gb|AC144729.29| Medicago truncatula clone mth2-15j6, complete sequence Length = 113550 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 298 aggatgaggatgaggaggacg 318 ||||||||||||||||||||| Sbjct: 45925 aggatgaggatgaggaggacg 45945
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 397 cgaagaggaaggcgccgcgct 417 ||||||||||||||||||||| Sbjct: 2137483 cgaagaggaaggcgccgcgct 2137503
>emb|AJ440725.1|FRA440725 Frankia sp. ACN14a ORF1-10 Length = 8989 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 108 gcggccctgcccgccccggcc 128 ||||||||||||||||||||| Sbjct: 2255 gcggccctgcccgccccggcc 2235
>emb|AL671969.39| Mouse DNA sequence from clone RP23-339O7 on chromosome 11 Contains part of a novel gene and the Nmu2r gene for neuromedin U receptor 2, complete sequence Length = 118473 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 383 ggagaggagggggacgaagaggaag 407 |||||||||||||| |||||||||| Sbjct: 109413 ggagaggagggggaggaagaggaag 109437
>gb|AE012276.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 184 of 460 of the complete genome Length = 11910 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 402 aggaaggcgccgcgctcgtcg 422 ||||||||||||||||||||| Sbjct: 2530 aggaaggcgccgcgctcgtcg 2510
>gb|AC007655.1| Homo sapiens 12p13 BAC RPCI11-233G1 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 180069 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 297 aaggatgaggatgaggaggac 317 ||||||||||||||||||||| Sbjct: 174812 aaggatgaggatgaggaggac 174832
>gb|DP000004.1| Lemur catta target 1 genomic scaffold Length = 1399362 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 64 ctccctccgccccttcccacc 84 ||||||||||||||||||||| Sbjct: 421881 ctccctccgccccttcccacc 421861
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 402 aggaaggcgccgcgctcgtcg 422 ||||||||||||||||||||| Sbjct: 3014614 aggaaggcgccgcgctcgtcg 3014634
>gb|AC146645.3| Otolemur garnettii clone CH256-494A7, complete sequence Length = 54219 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 64 ctccctccgccccttcccacc 84 ||||||||||||||||||||| Sbjct: 14425 ctccctccgccccttcccacc 14405
>gb|BC104524.1| Bos taurus protein kinase C substrate 80K-H, mRNA (cDNA clone MGC:129131 IMAGE:8122210), complete cds Length = 2114 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 298 aggatgaggatgaggaggacg 318 ||||||||||||||||||||| Sbjct: 1108 aggatgaggatgaggaggacg 1128
>gb|BC102522.1| Bos taurus TNF receptor-associated factor 6, mRNA (cDNA clone MGC:128039 IMAGE:7956136), complete cds Length = 2102 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 398 gaagaggaaggcgccgcgctc 418 ||||||||||||||||||||| Sbjct: 105 gaagaggaaggcgccgcgctc 85
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 397 cgaagaggaaggcgccgcgct 417 ||||||||||||||||||||| Sbjct: 1710737 cgaagaggaaggcgccgcgct 1710757
>ref|NM_001034661.1| Bos taurus TNF receptor-associated factor 6 (TRAF6), mRNA Length = 2102 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 398 gaagaggaaggcgccgcgctc 418 ||||||||||||||||||||| Sbjct: 105 gaagaggaaggcgccgcgctc 85
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.5 Identities = 30/33 (90%) Strand = Plus / Plus Query: 298 aggatgaggatgaggaggacgggagcgaggacg 330 |||||||||||||||| |||| |||||| |||| Sbjct: 1373092 aggatgaggatgaggatgacgagagcgacgacg 1373124
>gb|AC146881.3| Otolemur garnettii clone CH256-571D18, complete sequence Length = 240447 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 64 ctccctccgccccttcccacc 84 ||||||||||||||||||||| Sbjct: 216773 ctccctccgccccttcccacc 216753
>gb|DP000025.1| Gorilla gorilla gorilla target 1 genomic scaffold Length = 1787293 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 63 actccctccgccccttcccac 83 ||||||||||||||||||||| Sbjct: 457302 actccctccgccccttcccac 457282
>gb|DP000024.1| Eulemur macaco macaco target 1 genomic scaffold Length = 1570569 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 64 ctccctccgccccttcccacc 84 ||||||||||||||||||||| Sbjct: 449244 ctccctccgccccttcccacc 449224
>gb|AC123970.3| Lemur catta clone LB2-159J16, complete sequence Length = 183268 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 64 ctccctccgccccttcccacc 84 ||||||||||||||||||||| Sbjct: 155930 ctccctccgccccttcccacc 155910
>dbj|AP003233.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0037C04 Length = 137879 Score = 42.1 bits (21), Expect = 1.5 Identities = 30/33 (90%) Strand = Plus / Plus Query: 298 aggatgaggatgaggaggacgggagcgaggacg 330 |||||||||||||||| |||| |||||| |||| Sbjct: 71143 aggatgaggatgaggatgacgagagcgacgacg 71175
>gb|AC002080.1|AC002080 Human BAC clone CTA-253B13 from 7q31-q32, complete sequence Length = 171905 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 63 actccctccgccccttcccac 83 ||||||||||||||||||||| Sbjct: 85620 actccctccgccccttcccac 85600
>gb|AF018073.1|AF018073 Rhodobacter sphaeroides operon regulator (smoC), periplasmic sorbitol-binding protein (smoE), sorbitol/mannitol transport inner membrane protein (smoF), sorbitol/mannitol transport inner membrane protein (smoG), sorbitol/mannitol transport ATP-binding transport protein (smoK), sorbitol dehydrogenase (smoS), mannitol dehydrogenase (mtlK), and periplasmic mannitol-binding protein (smoM) genes, complete cds Length = 9810 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 322 gcgaggacgcgccgctcctggagga 346 |||||||||||||||||||| |||| Sbjct: 1336 gcgaggacgcgccgctcctgaagga 1360
>gb|L13462.1|BOVCALRET Bovine calreticulin (brain isoform) mRNA, complete cds Length = 1542 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 296 caaggatgaggatgaggagga 316 ||||||||||||||||||||| Sbjct: 1401 caaggatgaggatgaggagga 1421
>gb|AF046925.1|AF046925 Homo sapiens hepatocyte growth factor receptor (c-met) gene, promoter sequence Length = 3020 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 63 actccctccgccccttcccac 83 ||||||||||||||||||||| Sbjct: 2785 actccctccgccccttcccac 2765
>gb|DP000022.1| Microcebus murinus target 1 genomic scaffold Length = 1595145 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 64 ctccctccgccccttcccacc 84 ||||||||||||||||||||| Sbjct: 475844 ctccctccgccccttcccacc 475824
>emb|AL731692.8| Mouse DNA sequence from clone RP23-245M18 on chromosome X, complete sequence Length = 169309 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 385 agaggagggggacgaagagga 405 ||||||||||||||||||||| Sbjct: 130406 agaggagggggacgaagagga 130386
>gb|AC145439.4| Microcebus murinus clone CH257-441K3, complete sequence Length = 215533 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 64 ctccctccgccccttcccacc 84 ||||||||||||||||||||| Sbjct: 117885 ctccctccgccccttcccacc 117865
>dbj|AB067687.1| Bos taurus crt mRNA for calreticulin, complete cds Length = 1930 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 296 caaggatgaggatgaggagga 316 ||||||||||||||||||||| Sbjct: 1237 caaggatgaggatgaggagga 1257
>dbj|AP002909.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0044F08 Length = 141528 Score = 42.1 bits (21), Expect = 1.5 Identities = 30/33 (90%) Strand = Plus / Plus Query: 298 aggatgaggatgaggaggacgggagcgaggacg 330 |||||||||||||||| |||| |||||| |||| Sbjct: 22713 aggatgaggatgaggatgacgagagcgacgacg 22745
>gb|AC120878.10| Mus musculus chromosome 1, clone RP24-548K2, complete sequence Length = 232085 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 aggatgaggatgaggaggac 317 |||||||||||||||||||| Sbjct: 55248 aggatgaggatgaggaggac 55267
>ref|XM_523416.1| PREDICTED: Pan troglodytes AT-binding transcription factor 1 (LOC468024), mRNA Length = 13500 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 296 caaggatgaggatgaggagg 315 |||||||||||||||||||| Sbjct: 9576 caaggatgaggatgaggagg 9595
>gb|AC156036.4| Mus musculus BAC clone RP23-341B16 from chromosome 12, complete sequence Length = 211424 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 aggatgaggatgaggaggac 317 |||||||||||||||||||| Sbjct: 190953 aggatgaggatgaggaggac 190972
>gb|AC166821.2| Mus musculus BAC clone RP24-68F22 from chromosome 17, complete sequence Length = 202649 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 341 ggaggagaaggagggggcggacgaggac 368 |||||||||||||| || |||||||||| Sbjct: 96499 ggaggagaaggaggaggaggacgaggac 96472
>ref|XM_468683.1| Oryza sativa (japonica cultivar-group), mRNA Length = 834 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 344 ggagaaggagggggcggacgagga 367 |||| ||||||||||||||||||| Sbjct: 312 ggaggaggagggggcggacgagga 335
>ref|NM_006885.2| Homo sapiens AT-binding transcription factor 1 (ATBF1), mRNA Length = 11893 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 296 caaggatgaggatgaggagg 315 |||||||||||||||||||| Sbjct: 7729 caaggatgaggatgaggagg 7748
>ref|XM_514313.1| PREDICTED: Pan troglodytes similar to heterogeneous nuclear ribonucleoprotein U isoform b; p120 nuclear protein; hnRNP U protein; scaffold attachment factor A (LOC457867), mRNA Length = 2514 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 392 ggggacgaagaggaaggcgc 411 |||||||||||||||||||| Sbjct: 436 ggggacgaagaggaaggcgc 455
>gb|DP000014.1| Callithrix jacchus target 1 genomic scaffold Length = 1952403 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 ctccctccgccccttcccac 83 |||||||||||||||||||| Sbjct: 590457 ctccctccgccccttcccac 590438
>gb|AC164925.3| Colobus guereza clone CH272-271L4, complete sequence Length = 199954 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 ctccctccgccccttcccac 83 |||||||||||||||||||| Sbjct: 188191 ctccctccgccccttcccac 188172
>gb|AC169705.1| Rhesus Macaque BAC CH250-174C17 (Children's Hospital Oakland Research Institute Rhesus macaque Adult Male BAC Library) complete sequence Length = 181644 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 298 aggatgaggatgaggaggac 317 |||||||||||||||||||| Sbjct: 141423 aggatgaggatgaggaggac 141404
>gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, complete genome Length = 943016 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 97 acctgcgggctgcggccctgcccg 120 |||||| ||||||||||||||||| Sbjct: 370340 acctgccggctgcggccctgcccg 370317
>gb|AY374447.1| Zea mays fatty aldehyde dehydrogenase 1 gene, complete cds Length = 4739 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 335 gctcctggaggagaaggagg 354 |||||||||||||||||||| Sbjct: 675 gctcctggaggagaaggagg 694
>ref|XM_364468.1| Magnaporthe grisea 70-15 hypothetical protein (MG09313.4) partial mRNA Length = 2334 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 299 ggatgaggatgaggaggacg 318 |||||||||||||||||||| Sbjct: 138 ggatgaggatgaggaggacg 157
>gb|BC003621.2| Homo sapiens heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A), transcript variant 2, mRNA (cDNA clone MGC:1992 IMAGE:2966453), complete cds Length = 2634 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 392 ggggacgaagaggaaggcgc 411 |||||||||||||||||||| Sbjct: 587 ggggacgaagaggaaggcgc 606
>ref|NM_004501.3| Homo sapiens heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) (HNRPU), transcript variant 2, mRNA Length = 6789 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 392 ggggacgaagaggaaggcgc 411 |||||||||||||||||||| Sbjct: 654 ggggacgaagaggaaggcgc 673
>ref|NM_031844.2| Homo sapiens heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) (HNRPU), transcript variant 1, mRNA Length = 6846 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 392 ggggacgaagaggaaggcgc 411 |||||||||||||||||||| Sbjct: 654 ggggacgaagaggaaggcgc 673
>gb|AC084729.2| Papio anubis clone RP41-12N1, complete sequence Length = 208707 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 ctccctccgccccttcccac 83 |||||||||||||||||||| Sbjct: 94170 ctccctccgccccttcccac 94151
>gb|AC150661.6| Mus musculus BAC clone RP23-6A9 from chromosome 12, complete sequence Length = 234903 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 298 aggatgaggatgaggaggac 317 |||||||||||||||||||| Sbjct: 173647 aggatgaggatgaggaggac 173628
>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome Length = 3402093 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 87 cgacgaaaacacctgcgggc 106 |||||||||||||||||||| Sbjct: 1710662 cgacgaaaacacctgcgggc 1710643
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 344 ggagaaggagggggcggacgagga 367 |||| ||||||||||||||||||| Sbjct: 17027621 ggaggaggagggggcggacgagga 17027598
>gb|AC124739.2| Mus musculus BAC clone RP23-344H4 from chromosome 12, complete sequence Length = 224632 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 aggatgaggatgaggaggac 317 |||||||||||||||||||| Sbjct: 203886 aggatgaggatgaggaggac 203905
>gb|AC120538.4| Oryza sativa chromosome 3 BAC OSJNBb0059G13 genomic sequence, complete sequence Length = 157662 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 344 ggagaaggagggggcggacgagga 367 |||| ||||||||||||||||||| Sbjct: 58367 ggaggaggagggggcggacgagga 58344
>gb|AC124987.9| Mus musculus chromosome 3, clone RP24-364E17, complete sequence Length = 165330 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 382 tggagaggagggggacgaagagga 405 ||||||||||||||| |||||||| Sbjct: 17670 tggagaggagggggaggaagagga 17693
>ref|XM_742867.1| Aspergillus fumigatus Af293 oxidoreductase, short chain dehydrogenase/reductase family (Afu5g03840) partial mRNA Length = 852 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 353 gggggcggacgaggactggg 372 |||||||||||||||||||| Sbjct: 217 gggggcggacgaggactggg 236
>gb|BC060729.1| Mus musculus AT motif binding factor 1, mRNA (cDNA clone IMAGE:6408463), partial cds Length = 5293 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 296 caaggatgaggatgaggagg 315 |||||||||||||||||||| Sbjct: 1029 caaggatgaggatgaggagg 1048
>gb|BC007950.2| Homo sapiens heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A), mRNA (cDNA clone IMAGE:4299389), partial cds Length = 2927 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 392 ggggacgaagaggaaggcgc 411 |||||||||||||||||||| Sbjct: 135 ggggacgaagaggaaggcgc 154
>gb|AC007335.7| Homo sapiens chromosome 16 clone RP11-165M2, complete sequence Length = 134482 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 340 tggaggagaaggagggggcggacgagga 367 ||||||||||||||| || ||||||||| Sbjct: 56074 tggaggagaaggaggaggaggacgagga 56047
>ref|XM_862501.1| PREDICTED: Canis familiaris similar to acetyl-coenzyme A carboxylase alpha, transcript variant 10 (LOC491130), mRNA Length = 8357 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 336 ctcctggaggagaaggaggg 355 |||||||||||||||||||| Sbjct: 121 ctcctggaggagaaggaggg 140
>ref|XM_548250.2| PREDICTED: Canis familiaris similar to acetyl-coenzyme A carboxylase alpha, transcript variant 1 (LOC491130), mRNA Length = 8357 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 336 ctcctggaggagaaggaggg 355 |||||||||||||||||||| Sbjct: 121 ctcctggaggagaaggaggg 140
>ref|XM_862483.1| PREDICTED: Canis familiaris similar to acetyl-coenzyme A carboxylase alpha, transcript variant 9 (LOC491130), mRNA Length = 8357 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 336 ctcctggaggagaaggaggg 355 |||||||||||||||||||| Sbjct: 121 ctcctggaggagaaggaggg 140
>ref|XM_862473.1| PREDICTED: Canis familiaris similar to acetyl-coenzyme A carboxylase alpha, transcript variant 8 (LOC491130), mRNA Length = 8387 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 336 ctcctggaggagaaggaggg 355 |||||||||||||||||||| Sbjct: 121 ctcctggaggagaaggaggg 140
>ref|XM_862461.1| PREDICTED: Canis familiaris similar to acetyl-coenzyme A carboxylase alpha, transcript variant 7 (LOC491130), mRNA Length = 8336 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 336 ctcctggaggagaaggaggg 355 |||||||||||||||||||| Sbjct: 121 ctcctggaggagaaggaggg 140
>ref|XM_862451.1| PREDICTED: Canis familiaris similar to acetyl-coenzyme A carboxylase alpha, transcript variant 6 (LOC491130), mRNA Length = 8342 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 336 ctcctggaggagaaggaggg 355 |||||||||||||||||||| Sbjct: 121 ctcctggaggagaaggaggg 140
>ref|XM_862443.1| PREDICTED: Canis familiaris similar to acetyl-coenzyme A carboxylase alpha, transcript variant 5 (LOC491130), mRNA Length = 8339 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 336 ctcctggaggagaaggaggg 355 |||||||||||||||||||| Sbjct: 121 ctcctggaggagaaggaggg 140
>gb|AC124511.4| Mus musculus BAC clone RP23-440I16 from chromosome 12, complete sequence Length = 179914 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 aggatgaggatgaggaggac 317 |||||||||||||||||||| Sbjct: 100303 aggatgaggatgaggaggac 100322
>gb|AC126032.4| Mus musculus BAC clone RP24-94B12 from chromosome 1, complete sequence Length = 207475 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 aaggatgaggatgaggagga 316 |||||||||||||||||||| Sbjct: 205075 aaggatgaggatgaggagga 205056
>gb|AC122873.5| Mus musculus BAC clone RP23-110K10 from 8, complete sequence Length = 199474 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 296 caaggatgaggatgaggagg 315 |||||||||||||||||||| Sbjct: 101608 caaggatgaggatgaggagg 101627
>ref|XM_845999.1| PREDICTED: Canis familiaris similar to Alpha-fetoprotein enhancer binding protein (AT motif-binding factor) (AT-binding transcription factor 1), transcript variant 2 (LOC489729), mRNA Length = 11346 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 296 caaggatgaggatgaggagg 315 |||||||||||||||||||| Sbjct: 7083 caaggatgaggatgaggagg 7102
>ref|XM_546849.2| PREDICTED: Canis familiaris similar to Alpha-fetoprotein enhancer binding protein (AT motif-binding factor) (AT-binding transcription factor 1), transcript variant 1 (LOC489729), mRNA Length = 11373 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 296 caaggatgaggatgaggagg 315 |||||||||||||||||||| Sbjct: 7110 caaggatgaggatgaggagg 7129
>gb|BC015782.1| Homo sapiens heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A), mRNA (cDNA clone MGC:23593 IMAGE:4857112), complete cds Length = 3266 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 392 ggggacgaagaggaaggcgc 411 |||||||||||||||||||| Sbjct: 131 ggggacgaagaggaaggcgc 150
>ref|NM_031783.1| Rattus norvegicus neurofilament, light polypeptide (Nefl), mRNA Length = 2032 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 385 agaggagggggacgaagaggaagg 408 |||||||||||| ||||||||||| Sbjct: 1523 agaggagggggaggaagaggaagg 1546
>emb|X65488.1|HSHNRNPU H.sapiens U21.1 mRNA Length = 3223 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 392 ggggacgaagaggaaggcgc 411 |||||||||||||||||||| Sbjct: 477 ggggacgaagaggaaggcgc 496
>emb|BX323046.3| Human DNA sequence from clone RP11-11N7 on chromosome 1 Contains the FAM36A gene for member A of family with sequence similarity 36, the gene for a novel protein (FLJ37978, FLJ30202), the HNRPU gene for heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) and three CpG islands, complete sequence Length = 124570 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 392 ggggacgaagaggaaggcgc 411 |||||||||||||||||||| Sbjct: 65173 ggggacgaagaggaaggcgc 65154
>gb|BC099486.1| Mus musculus similar to Hippocalcin-like protein 1 (Visinin-like protein 3) (VILIP-3) (Neural visinin-like protein 3) (NVL-3) (NVP-3), mRNA (cDNA clone MGC:117729 IMAGE:30937101), complete cds Length = 761 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 aggatgaggatgaggaggac 317 |||||||||||||||||||| Sbjct: 37 aggatgaggatgaggaggac 56
>emb|AL353671.6| Human DNA sequence from clone RP11-205M20 on chromosome 9 Contains the 5' end of the gene for DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide (RIG-I), the gene for tumor protein p53-binding protein (TP53BPL), a novel gene, a DNA fragmentation factor, 40kDa, beta polypeptide (caspase-activated DNase) (DFFB) (CAD, CPAN, DFF40) pseudogene, a novel gene (FLJ25547), the NDUFB6 gene for NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 6, 17kDa (B17), and a CpG island, complete sequence Length = 155585 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 337 tcctggaggagaaggagggg 356 |||||||||||||||||||| Sbjct: 139389 tcctggaggagaaggagggg 139408
>gb|AC157799.3| Mus musculus chromosome 1, clone RP24-154L11, complete sequence Length = 159548 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 aggatgaggatgaggaggac 317 |||||||||||||||||||| Sbjct: 93068 aggatgaggatgaggaggac 93087
>emb|BX042514.1|CNS094YU Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAC14CD03 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 455 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 109 cggccctgcccgccccggcc 128 |||||||||||||||||||| Sbjct: 8 cggccctgcccgccccggcc 27
>emb|AL929588.11| Mouse DNA sequence from clone RP23-87L24 on chromosome 2, complete sequence Length = 134787 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 aaggatgaggatgaggagga 316 |||||||||||||||||||| Sbjct: 19140 aaggatgaggatgaggagga 19121
>emb|AL731594.5|OSJN00234 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0032N05, complete sequence Length = 159486 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 ctactccctccgccccttcc 80 |||||||||||||||||||| Sbjct: 10670 ctactccctccgccccttcc 10651
>emb|AL731581.2|OSJN00228 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0022F16, complete sequence Length = 154397 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 ctactccctccgccccttcc 80 |||||||||||||||||||| Sbjct: 138627 ctactccctccgccccttcc 138608
>emb|AJ278504.1|EBU278504 Eptatretus burgeri mitochondrial complete mitochondrial genome Length = 17168 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 aaggatgaggatgaggagga 316 |||||||||||||||||||| Sbjct: 7283 aaggatgaggatgaggagga 7264
>emb|AJ251829.1|SSC251829 Sus scrofa MHC class I SLA genomic region, haplotype H01, clone BAC 207G8 Length = 152211 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 380 gatggagaggagggggacgaagaggaag 407 |||| ||||||||||||||| ||||||| Sbjct: 78121 gatgaagaggagggggacgaggaggaag 78094
>gb|AC020766.10| Homo sapiens chromosome 16 clone RP11-70N16, complete sequence Length = 173595 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 340 tggaggagaaggagggggcggacgagga 367 ||||||||||||||| || ||||||||| Sbjct: 136404 tggaggagaaggaggaggaggacgagga 136431
>gb|AC146926.3| Callithrix jacchus clone CH259-265E13, complete sequence Length = 125956 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 ctccctccgccccttcccac 83 |||||||||||||||||||| Sbjct: 76889 ctccctccgccccttcccac 76870
>dbj|AK126868.1| Homo sapiens cDNA FLJ44920 fis, clone BRAMY3011501, moderately similar to Heterogenous nuclear ribonucleoprotein U Length = 3498 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 392 ggggacgaagaggaaggcgc 411 |||||||||||||||||||| Sbjct: 395 ggggacgaagaggaaggcgc 414
>gb|AC004943.2| Homo sapiens PAC clone RP5-991G20 from 16, complete sequence Length = 141313 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 296 caaggatgaggatgaggagg 315 |||||||||||||||||||| Sbjct: 70855 caaggatgaggatgaggagg 70874
>gb|DP000005.1| Macaca mulatta target 1 genomic scaffold Length = 1678549 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 ctccctccgccccttcccac 83 |||||||||||||||||||| Sbjct: 469178 ctccctccgccccttcccac 469159
>dbj|AB168651.1| Macaca fascicularis testis cDNA clone: QtsA-13832, similar to human heterogeneous nuclear ribonucleoprotein U (scaffoldattachment factor A) (HNRPU), transcript variant 2, mRNA, RefSeq: NM_004501.2 Length = 3217 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 392 ggggacgaagaggaaggcgc 411 |||||||||||||||||||| Sbjct: 620 ggggacgaagaggaaggcgc 639
>gb|AC144908.17| Mus musculus chromosome 5, clone RP23-102O19, complete sequence Length = 212299 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 339 ctggaggagaaggagggggc 358 |||||||||||||||||||| Sbjct: 77910 ctggaggagaaggagggggc 77929
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 ctactccctccgccccttcc 80 |||||||||||||||||||| Sbjct: 4029312 ctactccctccgccccttcc 4029293
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 344 ggagaaggagggggcggacgagga 367 |||| ||||||||||||||||||| Sbjct: 18565894 ggaggaggagggggcggacgagga 18565917
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 344 ggagaaggagggggcggacgagga 367 |||| ||||||||||||||||||| Sbjct: 17021190 ggaggaggagggggcggacgagga 17021167
>gb|DP000029.1| Cercopithecus aethiops target 1 genomic scaffold Length = 1825024 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 ctccctccgccccttcccac 83 |||||||||||||||||||| Sbjct: 492880 ctccctccgccccttcccac 492861
>dbj|AB054296.2| Oryzias latipes OlGC2 gene for membrane guanylyl cyclase OlGC2, complete cds Length = 27582 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 298 aggatgaggatgaggaggac 317 |||||||||||||||||||| Sbjct: 12885 aggatgaggatgaggaggac 12866
>gb|AC160211.1| Genomic seqeunce for Zea mays BAC clone ZMMBBb0448F23, complete sequence Length = 132549 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 310 aggaggacgggagcgaggac 329 |||||||||||||||||||| Sbjct: 1717 aggaggacgggagcgaggac 1698
>gb|AY190944.1| Drosophila pseudoobscura clone DPSF01_8_E17 (D1422) genomic sequence Length = 42627 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 298 aggatgaggatgaggaggac 317 |||||||||||||||||||| Sbjct: 23197 aggatgaggatgaggaggac 23178
>gb|AC068947.17| Mus Musculus Strain C57BL6/J Chromosome 3 BAC, RP23-108E10, complete sequence Length = 211512 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 382 tggagaggagggggacgaagagga 405 ||||||||||||||| |||||||| Sbjct: 8904 tggagaggagggggaggaagagga 8881
>gb|AC124039.3| Macaca mulatta clone CH250-191K8, complete sequence Length = 174570 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 ctccctccgccccttcccac 83 |||||||||||||||||||| Sbjct: 71457 ctccctccgccccttcccac 71438
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 gccctgcccgccccggccag 130 |||||||||||||||||||| Sbjct: 4937020 gccctgcccgccccggccag 4937001
>emb|AL844579.10| Mouse DNA sequence from clone RP23-219M22 on chromosome 2, complete sequence Length = 103290 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 aaggatgaggatgaggagga 316 |||||||||||||||||||| Sbjct: 47579 aaggatgaggatgaggagga 47560
>gb|AC006530.4|AC006530 Homo sapiens chromosome 14 clone BAC 316E14 map 14q24.3, complete sequence Length = 203010 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 335 gctcctggaggagaaggagg 354 |||||||||||||||||||| Sbjct: 128426 gctcctggaggagaaggagg 128407
>gb|AF068846.1|AF068846 Homo sapiens scaffold attachment factor A (SAF-A) mRNA, complete cds Length = 3500 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 392 ggggacgaagaggaaggcgc 411 |||||||||||||||||||| Sbjct: 653 ggggacgaagaggaaggcgc 672
>gb|AC140346.4| Mus musculus BAC clone RP24-260I8 from 16, complete sequence Length = 185587 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 386 gaggagggggacgaagagga 405 |||||||||||||||||||| Sbjct: 140839 gaggagggggacgaagagga 140858
>emb|CT010440.18| Mouse DNA sequence from clone RP23-35N23 on chromosome 9, complete sequence Length = 93990 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 341 ggaggagaaggagggggcggacgaggac 368 |||||||||||||| || |||||||||| Sbjct: 79305 ggaggagaaggaggaggaggacgaggac 79278
>gb|AC157487.1| Genomic sequence for Zea mays clone ZMMBBb0614J24, from chromosome 8, complete sequence Length = 136932 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 310 aggaggacgggagcgaggac 329 |||||||||||||||||||| Sbjct: 90038 aggaggacgggagcgaggac 90019
>emb|AL442115.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0711G06, complete sequence Length = 148644 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 341 ggaggagaaggagggggcggacgaggac 368 |||||||||||||| || |||||||||| Sbjct: 81088 ggaggagaaggaggaggaggacgaggac 81061
>ref|NM_007496.1| Mus musculus AT motif binding factor 1 (Atbf1), mRNA Length = 12047 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 296 caaggatgaggatgaggagg 315 |||||||||||||||||||| Sbjct: 7807 caaggatgaggatgaggagg 7826
>emb|X84216.1|AARNARPP1 A.alternata mRNA for ribosomal protein P1 Length = 595 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 341 ggaggagaaggagggggcggacgaggac 368 |||||||||||||| | ||||||||||| Sbjct: 333 ggaggagaaggaggagtcggacgaggac 360
>emb|AL049780.4|CNS00007 Human chromosome 14 DNA sequence BAC R-950C14 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 195891 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 335 gctcctggaggagaaggagg 354 |||||||||||||||||||| Sbjct: 183708 gctcctggaggagaaggagg 183727
>gb|AC091260.10| Mus musculus chromosome 9, clone RP23-208K9, complete sequence Length = 188754 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 341 ggaggagaaggagggggcggacgaggac 368 |||||||||||||| || |||||||||| Sbjct: 131809 ggaggagaaggaggaggaggacgaggac 131836
>gb|AC134917.5| Mus musculus BAC clone RP23-64B3 from chromosome 12, complete sequence Length = 225046 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 aggatgaggatgaggaggac 317 |||||||||||||||||||| Sbjct: 198739 aggatgaggatgaggaggac 198758
>dbj|D13413.1|HUMTA120 Homo sapiens mRNA for p120, partial cds Length = 684 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 392 ggggacgaagaggaaggcgc 411 |||||||||||||||||||| Sbjct: 449 ggggacgaagaggaaggcgc 468
>dbj|AP002856.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-816H13, complete sequence Length = 227942 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 298 aggatgaggatgaggaggac 317 |||||||||||||||||||| Sbjct: 119808 aggatgaggatgaggaggac 119789
>gb|AC148187.3| Saimiri boliviensis boliviensis clone CH254-373M5, complete sequence Length = 180635 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 ctccctccgccccttcccac 83 |||||||||||||||||||| Sbjct: 80885 ctccctccgccccttcccac 80866
>gb|AC142557.3| Cercopithecus aethiops clone CH252-402M4, complete sequence Length = 150854 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 ctccctccgccccttcccac 83 |||||||||||||||||||| Sbjct: 107573 ctccctccgccccttcccac 107554
>gb|AC135673.5| Mus musculus BAC clone RP24-279A17 from 16, complete sequence Length = 173965 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 386 gaggagggggacgaagagga 405 |||||||||||||||||||| Sbjct: 24260 gaggagggggacgaagagga 24279
>gb|AC140250.3| Mus musculus BAC clone RP24-288J3 from 1, complete sequence Length = 163490 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 aaggatgaggatgaggagga 316 |||||||||||||||||||| Sbjct: 24904 aaggatgaggatgaggagga 24885
>gb|AC122513.5| Mus musculus BAC clone RP24-455A5 from 3, complete sequence Length = 164485 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 382 tggagaggagggggacgaagagga 405 ||||||||||||||| |||||||| Sbjct: 158110 tggagaggagggggaggaagagga 158133
>gb|AF010496.1|AF010496 Rhodobacter capsulatus strain SB1003, partial genome Length = 189370 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 cgggctgcggccctgcccgc 121 |||||||||||||||||||| Sbjct: 42524 cgggctgcggccctgcccgc 42505
>gb|L32832.1|HUMZFHP Homo sapiens zinc finger homeodomain protein (ATBF1-A) mRNA, complete cds Length = 11893 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 296 caaggatgaggatgaggagg 315 |||||||||||||||||||| Sbjct: 7729 caaggatgaggatgaggagg 7748
>gb|AF031880.1|AF031880 Rattus norvegicus light molecular-weight neurofilament (NF-L) mRNA, complete cds Length = 2032 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 385 agaggagggggacgaagaggaagg 408 |||||||||||| ||||||||||| Sbjct: 1523 agaggagggggaggaagaggaagg 1546
>gb|BC024767.1| Homo sapiens heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A), mRNA (cDNA clone MGC:29899 IMAGE:4993703), complete cds Length = 2926 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 392 ggggacgaagaggaaggcgc 411 |||||||||||||||||||| Sbjct: 587 ggggacgaagaggaaggcgc 606
>gb|BC003367.1| Homo sapiens heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A), mRNA (cDNA clone MGC:5216 IMAGE:2900876), complete cds Length = 3396 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 392 ggggacgaagaggaaggcgc 411 |||||||||||||||||||| Sbjct: 585 ggggacgaagaggaaggcgc 604
>gb|AC130829.4| Mus musculus BAC clone RP23-451I11 from 12, complete sequence Length = 189692 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 298 aggatgaggatgaggaggac 317 |||||||||||||||||||| Sbjct: 77517 aggatgaggatgaggaggac 77498
>gb|AC163633.4| Mus musculus BAC clone RP24-177N8 from chromosome 12, complete sequence Length = 178326 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 aggatgaggatgaggaggac 317 |||||||||||||||||||| Sbjct: 130491 aggatgaggatgaggaggac 130510
>gb|AC151373.4| Aotus nancymaae clone CH258-480P12, complete sequence Length = 171933 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 ctccctccgccccttcccac 83 |||||||||||||||||||| Sbjct: 17053 ctccctccgccccttcccac 17034
>emb|AL844510.10| Mouse DNA sequence from clone RP23-54C21 on chromosome 2, complete sequence Length = 121507 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 385 agaggagggggacgaagaggaagg 408 |||||||||||| ||||||||||| Sbjct: 5677 agaggagggggaggaagaggaagg 5654
>emb|AL626768.21| Mouse DNA sequence from clone RP23-347B4 on chromosome 4, complete sequence Length = 227165 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 aaggatgaggatgaggagga 316 |||||||||||||||||||| Sbjct: 16332 aaggatgaggatgaggagga 16313
>gb|AC166358.5| Mus musculus BAC clone RP23-338N2 from chromosome 12, complete sequence Length = 226310 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 aggatgaggatgaggaggac 317 |||||||||||||||||||| Sbjct: 54866 aggatgaggatgaggaggac 54885
>gb|CP000105.1| Nitrosospira multiformis ATCC 25196 plasmid 2, complete sequence Length = 17036 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 247 cgatgggttgccgtcgggcc 266 |||||||||||||||||||| Sbjct: 13024 cgatgggttgccgtcgggcc 13005
>emb|X78262.1|HSTRE5REP H.sapiens mRNA for TRE5 Length = 7002 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 317 cgggagcgaggacgcgccgc 336 |||||||||||||||||||| Sbjct: 118 cgggagcgaggacgcgccgc 99
>dbj|D26046.1|MUSATMBF Mouse mRNA for AT motif-binding factor (ATBF1), complete cds Length = 12047 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 296 caaggatgaggatgaggagg 315 |||||||||||||||||||| Sbjct: 7807 caaggatgaggatgaggagg 7826
>dbj|D10250.1|HUMAFPEBP Homo sapiens mRNA for alpha-fetoprotein enhancer binding protein, complete cds Length = 8588 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 296 caaggatgaggatgaggagg 315 |||||||||||||||||||| Sbjct: 4443 caaggatgaggatgaggagg 4462 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,760,501 Number of Sequences: 3902068 Number of extensions: 2760501 Number of successful extensions: 93523 Number of sequences better than 10.0: 157 Number of HSP's better than 10.0 without gapping: 157 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 92399 Number of HSP's gapped (non-prelim): 1124 length of query: 450 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 428 effective length of database: 17,147,199,772 effective search space: 7339001502416 effective search space used: 7339001502416 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
