ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl20g07 |
|---|---|
| Clone Library Name | barley_pub |
>HWP1_CANAL (P46593) Hyphal wall protein 1 (Cell elongation protein 2)| Length = 634 Score = 36.6 bits (83), Expect = 0.030 Identities = 25/89 (28%), Positives = 35/89 (39%) Frame = -3 Query: 418 DVPPQPNSPPDNVFRPDRPDKTGPWSQKEGTCPASDPRNK*NNVKSSGISLAPVRAPTYP 239 D PPQP+ P DN +PD+PD P + P + ++ P P P Sbjct: 145 DNPPQPDIPCDNPPQPDQPDDNPPIPNIPTDWIPNIPTDWIPDIPEK--PTTPATTPNIP 202 Query: 238 TPLKSFHKVGLESSSTGSSFPADSAKPVP 152 + SSS+ S+ P SA P Sbjct: 203 ATTTTSESSSSSSSSSSSTTPKTSASTTP 231
>TOP2A_RAT (P41516) DNA topoisomerase 2-alpha (EC 5.99.1.3) (DNA topoisomerase| II, alpha isozyme) Length = 1526 Score = 31.6 bits (70), Expect = 0.95 Identities = 24/78 (30%), Positives = 33/78 (42%) Frame = -3 Query: 424 LTDVPPQPNSPPDNVFRPDRPDKTGPWSQKEGTCPASDPRNK*NNVKSSGISLAPVRAPT 245 L D PP+ PP N + +P QK T + K + S G S A V A T Sbjct: 1347 LDDTPPKTKMPPKNTKKALKP-------QKSSTSVDLESDGKDSVPASPGASAADVPAET 1399 Query: 244 YPTPLKSFHKVGLESSST 191 P+ S VG++ + T Sbjct: 1400 EPSKPSSKQTVGVKRTIT 1417
>GP1_CHLRE (Q9FPQ6) Vegetative cell wall protein gp1 precursor| (Hydroxyproline-rich glycoprotein 1) Length = 555 Score = 31.2 bits (69), Expect = 1.2 Identities = 28/90 (31%), Positives = 34/90 (37%) Frame = -3 Query: 421 TDVPPQPNSPPDNVFRPDRPDKTGPWSQKEGTCPASDPRNK*NNVKSSGISLAPVRAPTY 242 T +PP P SPP + P P P S P+ P S S P AP Sbjct: 284 TPMPPSPPSPPPSPAPPTPPTPPSP-SPPSPVPPSPAPVPPSPAPPSPAPSPPPSPAPPT 342 Query: 241 PTPLKSFHKVGLESSSTGSSFPADSAKPVP 152 P+P S S S S P+ S P+P Sbjct: 343 PSPSPSPSPSPSPSPSPSPS-PSPSPSPIP 371
>IF2_CORDI (Q6NGN2) Translation initiation factor IF-2| Length = 953 Score = 31.2 bits (69), Expect = 1.2 Identities = 28/90 (31%), Positives = 35/90 (38%), Gaps = 4/90 (4%) Frame = -3 Query: 409 PQPNSPPDNVFRPDRPDKTGPWSQKEGTCPASDPRNK*NNVKSSGISLAPVR--APTYPT 236 P+P + P +P P P E PA P K V G S A AP Sbjct: 80 PKPAATPQQAAKPAAPKPAAPKPAAEKK-PAPKPAAK--PVPKPGFSAAKAESSAPKPAA 136 Query: 235 PLKSFHKVGLESSSTGS--SFPADSAKPVP 152 P + K +SS+T + S P AKP P Sbjct: 137 PKPAAPKPAAQSSTTATPGSMPRPQAKPAP 166
>VRP1_YEAST (P37370) Verprolin| Length = 817 Score = 30.8 bits (68), Expect = 1.6 Identities = 31/111 (27%), Positives = 41/111 (36%), Gaps = 12/111 (10%) Frame = -3 Query: 421 TDVPPQPNSP----PDNVFRPDRPDKTGPWS--------QKEGTCPASDPRNK*NNVKSS 278 + PP P+ P P P P P S Q P+ P ++ + KSS Sbjct: 152 SSAPPIPDIPSSAAPPIPIVPSSPAPPLPLSGASAPKVPQNRPHMPSVRPAHRSHQRKSS 211 Query: 277 GISLAPVRAPTYPTPLKSFHKVGLESSSTGSSFPADSAKPVPLAVVSLDSR 125 ISL V AP P+ S T S P + P P + LDS+ Sbjct: 212 NISLPSVSAPPLPS----------ASLPTHVSNPPQAPPPPPTPTIGLDSK 252
>MMP15_MOUSE (O54732) Matrix metalloproteinase-15 precursor (EC 3.4.24.-)| (MMP-15) (Membrane-type matrix metalloproteinase 2) (MT-MMP 2) (MTMMP2) (Membrane-type-2 matrix metalloproteinase) (MT2-MMP) (MT2MMP) Length = 657 Score = 30.8 bits (68), Expect = 1.6 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = -3 Query: 412 PPQPNSPPDNVFRPDRPDKTGPWSQKEGT 326 PP+P PP +P+RP K GP Q T Sbjct: 327 PPRPPQPPHPGGKPERPPKPGPPPQPRAT 355
>RAD9A_HUMAN (Q99638) Cell cycle checkpoint control protein RAD9A (EC 3.1.11.2)| (DNA repair exonuclease rad9 homolog A) (hRAD9) Length = 391 Score = 30.4 bits (67), Expect = 2.1 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 5/53 (9%) Frame = -3 Query: 373 PDRPDKTGPWSQKE-----GTCPASDPRNK*NNVKSSGISLAPVRAPTYPTPL 230 P P GP S++E T P + P K ++ I LAPVR+P P+P+ Sbjct: 331 PQPPKSPGPHSEEEDEAEPSTVPGTPPPKKFRSLFFGSI-LAPVRSPQGPSPV 382
>VE4_HPV5B (P26550) Probable protein E4| Length = 245 Score = 30.4 bits (67), Expect = 2.1 Identities = 25/68 (36%), Positives = 32/68 (47%), Gaps = 7/68 (10%) Frame = -3 Query: 412 PPQPNSPPDNVFRPDRPDKTGPWSQKEGT---CPASD---PRNK*NNVKSSGISLAPVRA 251 PPQP P P + P ++EGT PAS R+K + +G L P RA Sbjct: 35 PPQPPLTPRPDSSPHQNSHNKPKPEEEGTDGGPPASQGDRKRSKGDQGPDTGPGLGPGRA 94 Query: 250 PT-YPTPL 230 P+ PTPL Sbjct: 95 PSPKPTPL 102
>MMP15_HUMAN (P51511) Matrix metalloproteinase-15 precursor (EC 3.4.24.-)| (MMP-15) (Membrane-type matrix metalloproteinase 2) (MT-MMP 2) (MTMMP2) (Membrane-type-2 matrix metalloproteinase) (MT2-MMP) (MT2MMP) (SMCP-2) Length = 669 Score = 30.4 bits (67), Expect = 2.1 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = -3 Query: 412 PPQPNSPPDNVFRPDRPDKTGPWSQKEGT 326 PP+P PP +P+RP K GP Q T Sbjct: 331 PPRPPQPPPPGGKPERPPKPGPPVQPRAT 359
>MUCDL_HUMAN (Q9HBB8) Mucin and cadherin-like protein precursor| (Mu-protocadherin) Length = 845 Score = 30.4 bits (67), Expect = 2.1 Identities = 26/111 (23%), Positives = 41/111 (36%), Gaps = 14/111 (12%) Frame = -3 Query: 412 PPQPNSPPDNVFRPDRPDKTGPWSQKEGTCPASDPRNK*NNVKSSGISLAP-------VR 254 PP + PP P+ TGPW+ P ++ + SSG P +R Sbjct: 456 PPSTDVPPS----PEAGGTTGPWTSTTSEVPRPPEPSQGPSTTSSGGGTGPHPPSGTTLR 511 Query: 253 APTYPTP-------LKSFHKVGLESSSTGSSFPADSAKPVPLAVVSLDSRQ 122 PT TP + H+ T + +++P+P V + S Q Sbjct: 512 PPTSSTPGGSPGAENSTSHQPATPGGDTAQTPKPGTSQPMPPGVGTSTSHQ 562
>HXD3_CHICK (O93353) Homeobox protein Hox-D3| Length = 413 Score = 29.6 bits (65), Expect = 3.6 Identities = 27/91 (29%), Positives = 36/91 (39%), Gaps = 2/91 (2%) Frame = -3 Query: 424 LTDVPPQPNSPPDNVFRPDRPDKTGPWSQKEGTCPASDPRNK*NNVKSSGISLAPVRAPT 245 LTD P PP +P P P SQ + PA N+ KS ++ V Sbjct: 84 LTDPQAPPQPPPAPQAQPPPPSSASP-SQNASSNPAPA-----NSTKSPALNSPTVSKQI 137 Query: 244 YPTPLKSFH--KVGLESSSTGSSFPADSAKP 158 +P +S K SSS+G S D + P Sbjct: 138 FPWMKESRQNTKQKNSSSSSGESCAGDKSPP 168
>HXA3_CHICK (Q7T3J5) Homeobox protein Hox-A3| Length = 413 Score = 29.6 bits (65), Expect = 3.6 Identities = 27/91 (29%), Positives = 36/91 (39%), Gaps = 2/91 (2%) Frame = -3 Query: 424 LTDVPPQPNSPPDNVFRPDRPDKTGPWSQKEGTCPASDPRNK*NNVKSSGISLAPVRAPT 245 LTD P PP +P P P SQ + PA N+ KS ++ V Sbjct: 84 LTDPQAPPQPPPAPQAQPPPPSSASP-SQNASSNPAPA-----NSTKSPALNSPTVSKQI 137 Query: 244 YPTPLKSFH--KVGLESSSTGSSFPADSAKP 158 +P +S K SSS+G S D + P Sbjct: 138 FPWMKESRQNTKQKNSSSSSGESCAGDKSPP 168
>GAG_IPMA (P11365) Retrovirus-related Gag polyprotein [Contains: Protease (EC| 3.4.23.-)] Length = 827 Score = 29.6 bits (65), Expect = 3.6 Identities = 23/72 (31%), Positives = 35/72 (48%) Frame = -3 Query: 364 PDKTGPWSQKEGTCPASDPRNK*NNVKSSGISLAPVRAPTYPTPLKSFHKVGLESSSTGS 185 PD + K G+ S PR++ +K G L+ R + P K+ HKV L ++S Sbjct: 513 PDSQSAYVPKNGS---SGPRSQ--GLKDMGTGLSGPRKQSERRPRKT-HKVDLRAASDFL 566 Query: 184 SFPADSAKPVPL 149 P S +PVP+ Sbjct: 567 LMPQMSIQPVPV 578
>TAU_MACMU (P57786) Microtubule-associated protein tau (Neurofibrillary tangle| protein) (Paired helical filament-tau) (PHF-tau) Length = 458 Score = 29.6 bits (65), Expect = 3.6 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 2/62 (3%) Frame = -3 Query: 412 PPQPNSPPDNVFRP--DRPDKTGPWSQKEGTCPASDPRNK*NNVKSSGISLAPVRAPTYP 239 PP P +PP + + +P P S++ G P S R+ ++ S G + R P+ P Sbjct: 175 PPAPKTPPSSATKQVQRKPPPAEPTSER-GEPPKSGDRSGYSSPGSPGTPGSRSRTPSLP 233 Query: 238 TP 233 TP Sbjct: 234 TP 235
>APS_RAT (Q9Z200) SH2 and PH domain-containing adapter protein APS (Adapter| protein with pleckstrin homology and Src homology 2 domains) Length = 621 Score = 29.3 bits (64), Expect = 4.7 Identities = 28/101 (27%), Positives = 37/101 (36%), Gaps = 13/101 (12%) Frame = -3 Query: 430 YLLTDVPPQPNSPPDNVFRPDRPDKTGPWSQK------EGTCPASDPRNK*NNVKSSGIS 269 Y+ PP P N P T P Q TCP + P N SSG S Sbjct: 506 YVRAQGPPPDPGPAPNTAAPVPACWTEPAGQHYFSSLATATCPPTSPSNGAGASSSSGSS 565 Query: 268 LAPVRAPTYPT--PLKSFHKVG-----LESSSTGSSFPADS 167 + P P PL + + LE++S + PAD+ Sbjct: 566 SSATSVPPRPAEGPLSARSRSNSTEHLLEAASGATEEPADA 606
>DBP_RAT (P16443) D site-binding protein (Albumin D box-binding protein)| (Albumin D-element-binding protein) (D site albumin promoter-binding protein 1) Length = 325 Score = 29.3 bits (64), Expect = 4.7 Identities = 28/107 (26%), Positives = 41/107 (38%), Gaps = 9/107 (8%) Frame = -3 Query: 415 VPPQPNSPPDNVFRPDRPDKTGPWSQKEGTCPASDPRNK*NNVKSSGISLAPVRAPTYPT 236 +PP P PP + P +T S G+C +S PR+ +P AP T Sbjct: 128 LPPSP-PPPGGLSPAPSPARTPAPSPGPGSCSSSSPRS------------SPGHAPARAT 174 Query: 235 -PLKSFHKVGLESSSTGSSFPADSAK--------PVPLAVVSLDSRQ 122 H+ GL S T S D+ + P LA+ S+ + Sbjct: 175 LGAAGGHRAGLTSRDTPSPVDPDTVEVLMTFEPDPADLALSSIPGHE 221
>DBP_MOUSE (Q60925) D site-binding protein (Albumin D box-binding protein)| (Albumin D-element-binding protein) Length = 325 Score = 29.3 bits (64), Expect = 4.7 Identities = 28/107 (26%), Positives = 41/107 (38%), Gaps = 9/107 (8%) Frame = -3 Query: 415 VPPQPNSPPDNVFRPDRPDKTGPWSQKEGTCPASDPRNK*NNVKSSGISLAPVRAPTYPT 236 +PP P PP + P +T S G+C +S PR+ +P AP T Sbjct: 128 LPPSP-PPPGGLSPAPSPARTPAPSPGPGSCSSSSPRS------------SPGHAPARAT 174 Query: 235 -PLKSFHKVGLESSSTGSSFPADSAK--------PVPLAVVSLDSRQ 122 H+ GL S T S D+ + P LA+ S+ + Sbjct: 175 LGAAGGHRAGLTSRDTPSPVDPDTVEVLMTFEPDPADLALSSIPGHE 221
>COG1_MOUSE (Q9Z160) Conserved oligomeric Golgi complex component 1 (Low| density lipoprotein receptor defect B-complementing protein) Length = 980 Score = 28.9 bits (63), Expect = 6.2 Identities = 10/25 (40%), Positives = 15/25 (60%) Frame = +2 Query: 119 SLSTIQRNHSQGNGLGGISGERRPC 193 +L T+ R H G G+G + GE + C Sbjct: 293 TLETVTRQHPTGKGIGALQGEMKLC 317
>ROM1_YEAST (P53046) RHO1 GDP-GTP exchange protein 1 (Protein kinase C| suppressor SKC1) Length = 1155 Score = 28.9 bits (63), Expect = 6.2 Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 13/108 (12%) Frame = -3 Query: 286 KSSGISLA-PVRAPTYPTPLKSFHKVGLESS--------STGSSFPADSAKPVPLAVVSL 134 K+SG + P + T PTP + H + L SS ST S F +S K + Sbjct: 163 KNSGSHMGDPNQLSTPPTPKSAGHTMELHSSFNGKHSSSSTSSLFALESLKTQNRRSSNS 222 Query: 133 DSRQGQWESR*SIHARH*LDDE----AFGYLKRVIVTPAVYPRLVEFL 2 + Q+ + H RH + + + + TP VYP L+ + Sbjct: 223 SNHSSQYRRHTNQHQRHHSRSKSSPVSLTEISMIKGTPLVYPALLSLI 270
>SFPQ_MOUSE (Q8VIJ6) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) Length = 699 Score = 28.9 bits (63), Expect = 6.2 Identities = 17/60 (28%), Positives = 24/60 (40%) Frame = -3 Query: 412 PPQPNSPPDNVFRPDRPDKTGPWSQKEGTCPASDPRNK*NNVKSSGISLAPVRAPTYPTP 233 PP ++PP N P GP P++ P + SSG+S P + P P Sbjct: 122 PPAVSAPPANPPTTGAPPGPGPTPTPPPAVPSTAPGPPPPSTPSSGVSTTPPQTGGPPPP 181
>PAK6_HUMAN (Q9NQU5) Serine/threonine-protein kinase PAK 6 (EC 2.7.11.1)| (p21-activated kinase 6) (PAK-6) (PAK-5) Length = 681 Score = 28.9 bits (63), Expect = 6.2 Identities = 20/83 (24%), Positives = 30/83 (36%) Frame = -3 Query: 409 PQPNSPPDNVFRPDRPDKTGPWSQKEGTCPASDPRNK*NNVKSSGISLAPVRAPTYPTPL 230 P P S P++ FRP + D K + P+ P + +P+ +P Sbjct: 281 PPPQSKPNSSFRPPQKDNPPSLVAKAQSLPSDQPVG----------TFSPLTTSDTSSPQ 330 Query: 229 KSFHKVGLESSSTGSSFPADSAK 161 KS G S PA S + Sbjct: 331 KSLRTAPATGQLPGRSSPAGSPR 353
>SC24D_HUMAN (O94855) Protein transport protein Sec24D (SEC24-related protein D)| Length = 1032 Score = 28.9 bits (63), Expect = 6.2 Identities = 30/104 (28%), Positives = 43/104 (41%), Gaps = 8/104 (7%) Frame = -3 Query: 415 VPPQPNSPPDNVFRPDRPDKTGPWSQKEGTCPASDPRNK*NNVKSSGISLAPVRAPTYPT 236 +PP P P + F + TG Q+ P P N NV SS P +YP Sbjct: 57 LPPGPPPPGPHQFGQNGAHATGHPPQR---FPGPPPVN---NVASSHAPYQPSAQSSYPG 110 Query: 235 PL--KSFHKVG-----LESSSTGSSF-PADSAKPVPLAVVSLDS 128 P+ S ++G ++ +S GS P P PL+ SL + Sbjct: 111 PISTSSVTQLGSQLSAMQINSYGSGMAPPSQGPPGPLSATSLQT 154
>VE4_HPV05 (P06924) Probable protein E4| Length = 245 Score = 28.9 bits (63), Expect = 6.2 Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 7/68 (10%) Frame = -3 Query: 412 PPQPNSPPDNVFRPDRPDKTGPWSQKEGT---CPASD---PRNK*NNVKSSGISLAPVRA 251 PPQP P P + P ++EGT PAS R+K + +G L P R Sbjct: 35 PPQPPLTPRPDSSPHQNSHNKPKPEEEGTDGGPPASQGDRKRSKGDQGPDTGPGLGPGRG 94 Query: 250 PT-YPTPL 230 P+ PTPL Sbjct: 95 PSPKPTPL 102
>ATN1_PANTR (Q5IS70) Atrophin-1 (Dentatorubral-pallidoluysian atrophy protein)| Length = 1186 Score = 28.5 bits (62), Expect = 8.1 Identities = 12/28 (42%), Positives = 15/28 (53%) Frame = -1 Query: 390 LTMSSARIGPIKPGLGAKRRGHAPLPTH 307 L S+A GP P GA+ H P+ TH Sbjct: 451 LANSNAHPGPFPPSTGAQSTAHPPVSTH 478
>ATN1_HUMAN (P54259) Atrophin-1 (Dentatorubral-pallidoluysian atrophy protein)| Length = 1185 Score = 28.5 bits (62), Expect = 8.1 Identities = 12/28 (42%), Positives = 15/28 (53%) Frame = -1 Query: 390 LTMSSARIGPIKPGLGAKRRGHAPLPTH 307 L S+A GP P GA+ H P+ TH Sbjct: 452 LANSNAHPGPFPPSTGAQSTAHPPVSTH 479
>COL19_CAEEL (P18835) Cuticle collagen 19 precursor| Length = 289 Score = 28.5 bits (62), Expect = 8.1 Identities = 11/35 (31%), Positives = 17/35 (48%) Frame = -3 Query: 412 PPQPNSPPDNVFRPDRPDKTGPWSQKEGTCPASDP 308 P P P ++P +P + GP + T PA +P Sbjct: 199 PAGPRGEPGTEYKPGQPGRPGPQGPRGETGPAGNP 233
>PCLO_HUMAN (Q9Y6V0) Protein piccolo (Aczonin)| Length = 5183 Score = 28.5 bits (62), Expect = 8.1 Identities = 26/94 (27%), Positives = 35/94 (37%), Gaps = 5/94 (5%) Frame = -3 Query: 409 PQPNSPPDNVFRPDRPDKTGPWSQKEGTCPASDPRNK*NNVK----SSGISLAPVRAP-T 245 P P+ PP P +P P +K PA P K G PV+ P T Sbjct: 299 PSPSKPPIQQPTPGKPPAQQPGHEKSQPGPAKPPAQPSGLTKPLAQQPGTVKPPVQPPGT 358 Query: 244 YPTPLKSFHKVGLESSSTGSSFPADSAKPVPLAV 143 P + + TGS P+ S +P P A+ Sbjct: 359 TKPPAQPLGPAKPPAQQTGSEKPS-SEQPGPKAL 391
>MBD6_HUMAN (Q96DN6) Methyl-CpG-binding domain protein 6 (Methyl-CpG-binding| protein MBD6) Length = 1003 Score = 28.5 bits (62), Expect = 8.1 Identities = 34/103 (33%), Positives = 43/103 (41%), Gaps = 11/103 (10%) Frame = +3 Query: 120 PCLLS---------SETTAKGTGLAESAGKEDPVELDSSPTL*NDLRGVG*VGALTGASE 272 PC+LS S TTA A S GK P P L + L G +G L+ + Sbjct: 695 PCVLSAPQPGPPTSSVTTATTDPGASSLGKA-PSNSGRPPQLLSPLLGASLLGDLSSLTS 753 Query: 273 IPLLLTLFYLFRGSEAGHVPSFWLQ--GPVLSGRSGRKTLSGG 395 P G +PS LQ GP+LSG+ G + L GG Sbjct: 754 SP--------------GALPSL-LQPPGPLLSGQLGLQLLPGG 781 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 70,175,998 Number of Sequences: 219361 Number of extensions: 1528274 Number of successful extensions: 4652 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 4367 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4642 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2735358828 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
