>CWC22_MAGGR (Q52B63) Pre-mRNA-splicing factor CWC22|
          Length = 907

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 24/77 (31%), Positives = 31/77 (40%)
 Frame = -3

Query: 416  KACRIPVTHPIWRCRSGRLSSPKASRYLAGIASSPFHPRMQGGGVAKRTKPSSYQLKKKN 237
            KA  +    P+ R  SG   SP   R     + SP   R  GG  A     +S   + ++
Sbjct: 810  KAGSVDNRSPLSRSPSGS-RSPSPRRRRDSPSRSPVRDRESGGRAAAAAPGNSEARRGRS 868

Query: 236  ISAVP*LNRGGSPAPPR 186
             S  P   R  SPAP R
Sbjct: 869  YSRSPSRTRSPSPAPSR 885

>DLX4_ELECQ (P87394) Homeobox protein DLX-4 (Fragment)|
          Length = 131

 Score = 29.3 bits (64), Expect = 4.1
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = -3

Query: 371 SGRLSSPKASRYLAGIASSPFHPRMQGGGVAKRTKPSSYQLKKK 240
           SG   S  A  Y      SP+HP  Q  G   R +P S Q +K+
Sbjct: 23  SGSAGSYAAKAYSEYSYGSPYHPHHQYSGAYNRVQPPSTQPEKE 66

>ZCHC2_HUMAN (Q9C0B9) Zinc finger CCHC domain-containing protein 2 (Fragment)|
          Length = 899

 Score = 29.3 bits (64), Expect = 4.1
 Identities = 15/54 (27%), Positives = 23/54 (42%)
 Frame = -2

Query: 411 LQDPGDAPDLAVQVRPPLLSQGQQVLGRHRLLPLPPKNAGRRSSKANQTKQLPA 250
           + +PG  P   V    P+     QV+G ++++P    N G      N    LPA
Sbjct: 572 IHNPGSFPGSPVATTDPITKSASQVVGLNQMVPQIEGNTGTVPQPTNVKVVLPA 625

>ZCHC2_MOUSE (Q69ZB8) Zinc finger CCHC domain-containing protein 2 (Fragment)|
          Length = 1168

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = -2

Query: 411  LQDPGDAPDLAVQVRPPLLSQGQQVLGRHRLLPLPPKNAGRRSSKANQTKQLPA 250
            + +PG  P   V    P+     QV+G ++++P    N G     +N    LPA
Sbjct: 844  VHNPGSFPGSPVATTDPITKSAPQVVGLNQMVPQIEGNTGTVPQPSNVKVVLPA 897

>MARCS_MOUSE (P26645) Myristoylated alanine-rich C-kinase substrate (MARCKS)|
          Length = 308

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 16/57 (28%), Positives = 24/57 (42%)
 Frame = -2

Query: 363 PLLSQGQQVLGRHRLLPLPPKNAGRRSSKANQTKQLPAKEEEHLSSAVAQSWRQPSP 193
           P   +  +  G     P P   AG  SS A   ++ PA  +E  +SA   +  +P P
Sbjct: 239 PQAEEQSEAAGEKAEEPAPGATAGDASSAAGPEQEAPAATDEAAASAAPAASPEPQP 295

>MUTL_THEAQ (P96082) DNA mismatch repair protein mutL|
          Length = 533

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = +2

Query: 2   SQLFQSQSVIEERSSKTGRPPFLQPTPDFPSIIYLQSQSGEG 127
           S LF  +     R      PPFL P P  P  I+ +S  GEG
Sbjct: 404 SPLFGIEGFGPGRVRLLSAPPFLHPYPLLPPEIFRESLKGEG 445

>TBC10_MOUSE (P58802) TBC1 domain family member 10A (EBP50-PDX interactor of 64|
           kDa) (EPI64 protein)
          Length = 500

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 17/55 (30%), Positives = 22/55 (40%)
 Frame = -3

Query: 332 AGIASSPFHPRMQGGGVAKRTKPSSYQLKKKNISAVP*LNRGGSPAPPRGTEGGD 168
           A + SS   P  Q     KRTK S+   K   +S    +   G   PP+G    D
Sbjct: 416 AALLSSKAKPHKQAQKEQKRTKTSAQLDKSPGLSQATVVTAAGDACPPQGVSPKD 470

>IF4G1_MOUSE (Q6NZJ6) Eukaryotic translation initiation factor 4 gamma 1|
           (eIF-4-gamma 1) (eIF-4G1) (eIF-4G 1)
          Length = 1600

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = -2

Query: 408 QDPGDAPDLAVQVRPPLLSQGQQVLGRHRLLPLPPKNAGRRSSKAN 271
           Q  G++P +AV +RP   SQG  + GR   LP P  + G  S  ++
Sbjct: 225 QPNGESPQVAVIIRPDDRSQGAAIGGRPG-LPGPEHSPGTESQPSS 269

>CM35H_HUMAN (Q9UGN4) CMRF35-H antigen precursor (CMRF35-H9) (CMRF-35-H9)|
           (CD300a antigen) (Inhibitory receptor protein 60)
           (IRp60) (IRC1/IRC2) (NK inhibitory receptor)
          Length = 299

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 5/42 (11%)
 Frame = -1

Query: 148 VSVRDVAA-----LTALGLEVDDGGEVWCGLQEGWSSCFAAP 38
           VS+RD  A     +T   L  +D G  WCG+   W   F  P
Sbjct: 75  VSIRDSPANLSFTVTLENLTEEDAGTYWCGVDTPWLQDFHDP 116

>DORS_DROME (P15330) Embryonic polarity protein dorsal|
          Length = 999

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 7/74 (9%)
 Frame = -2

Query: 396 DAPDLAVQVRPPLLSQGQQVLGRHRLLPLPPK-------NAGRRSSKANQTKQLPAKEEE 238
           + P   V   PP +   Q      +L PLPPK       NA  RS +AN  +  P+  E 
Sbjct: 675 ETPMRPVPPVPPAILTIQYPPEEDKLPPLPPKRIRKQDSNAENRSIEANTVQTKPSTGES 734

Query: 237 HLSSAVAQSWRQPS 196
            L+  +  + + P+
Sbjct: 735 PLNKRLPPAPKNPN 748


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,388,035
Number of Sequences: 219361
Number of extensions: 1149531
Number of successful extensions: 3643
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3643
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2395157885
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)