ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl20g02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_189035.2| Oryza sativa (japonica cultivar-group), mRNA 72 2e-09
2dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
3dbj|AP004708.3| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
4dbj|AK066731.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 2e-09
5ref|XM_480447.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.023
6dbj|AP005531.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.023
7dbj|AP004656.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.023
8gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 44 0.36
9dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.36
10gb|AC082645.13|AC082645 Oryza sativa chromosome 3 BAC OSJNBb0033... 44 0.36
11ref|NM_188047.1| Oryza sativa (japonica cultivar-group), Ozsa846... 42 1.4
12ref|XM_483286.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.4
13gb|AC135258.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.4
14gb|AC147811.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.4
15ref|XM_548208.2| PREDICTED: Canis familiaris similar to WD-repea... 42 1.4
16emb|AL138897.10| Human DNA sequence from clone RP11-231D11 on ch... 42 1.4
17dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
18dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
19dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
20dbj|AP001081.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
21dbj|AP001073.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
22dbj|AP005816.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
23dbj|AP006049.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
24dbj|AK111032.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.4
25dbj|AP004333.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
26gb|AY105436.1| Zea mays PCO078991 mRNA sequence 42 1.4
27gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.4
28ref|XM_507231.1| PREDICTED Oryza sativa (japonica cultivar-group... 40 5.6
29ref|XM_482398.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.6
30gb|BT018424.1| Zea mays clone EL01N0361G03.d mRNA sequence 40 5.6
31gb|AC120885.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.6
32ref|XM_419284.1| PREDICTED: Gallus gallus similar to MGC15407 pr... 40 5.6
33gb|AC163769.4| Pan troglodytes BAC clone CH251-59O12 from chromo... 40 5.6
34gb|AY480051.1| Homo sapiens plectin 11 mRNA, complete cds 40 5.6
35gb|AY480050.1| Homo sapiens plectin 10 mRNA, complete cds 40 5.6
36gb|AY480049.1| Homo sapiens plectin 8 mRNA, complete cds 40 5.6
37gb|AY480048.1| Homo sapiens plectin 7 mRNA, complete cds 40 5.6
38gb|AY480047.1| Homo sapiens plectin 6 mRNA, complete cds 40 5.6
39gb|AY480046.1| Homo sapiens plectin 3 mRNA, complete cds 40 5.6
40gb|AY480045.1| Homo sapiens plectin 2 mRNA, complete cds 40 5.6
41gb|AY480044.1| Homo sapiens plectin 1 mRNA, complete cds 40 5.6
42gb|CP000352.1| Ralstonia metallidurans CH34, complete genome 40 5.6
43ref|XM_752628.1| Ustilago maydis 521 hypothetical protein (UM015... 40 5.6
44ref|NM_000445.2| Homo sapiens plectin 1, intermediate filament b... 40 5.6
45ref|NM_201378.1| Homo sapiens plectin 1, intermediate filament b... 40 5.6
46ref|NM_201379.1| Homo sapiens plectin 1, intermediate filament b... 40 5.6
47ref|NM_201380.2| Homo sapiens plectin 1, intermediate filament b... 40 5.6
48ref|NM_201381.1| Homo sapiens plectin 1, intermediate filament b... 40 5.6
49ref|NM_201383.1| Homo sapiens plectin 1, intermediate filament b... 40 5.6
50ref|NM_201382.1| Homo sapiens plectin 1, intermediate filament b... 40 5.6
51ref|NM_201384.1| Homo sapiens plectin 1, intermediate filament b... 40 5.6
52ref|XM_503150.1| Yarrowia lipolytica CLIB122, YALI0D22418g predi... 40 5.6
53emb|AL357500.17| Human DNA sequence from clone RP11-242O24 on ch... 40 5.6
54emb|AL158072.9| Human DNA sequence from clone RP11-30O14 on chro... 40 5.6
55gb|AC109322.16| Homo sapiens chromosome 8, clone CTD-3065J16, co... 40 5.6
56emb|Z54367.1|HSPLECTIN H.sapiens gene for plectin 40 5.6
57gb|DP000059.1| Carollia perspicillata target 117 genomic scaffold 40 5.6
58ref|XM_688630.1| PREDICTED: Danio rerio similar to Golgi autoant... 40 5.6
59gb|U53204.1|HSU53204 Human plectin (PLEC1) mRNA, complete cds 40 5.6
60gb|U63610.1|HSPLEC1S3 Human plectin (PLEC1) gene, exons 3-32, an... 40 5.6
61gb|AC011712.6|AC011712 Homo sapiens chromosome 18, clone RP11-18... 40 5.6
62gb|AC000134.14| Homo sapiens Chromosome 11q13 BAC Clone 137c7, c... 40 5.6
63emb|BX934579.2| Gallus gallus finished cDNA, clone ChEST87a17 40 5.6
64dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
65gb|AC016723.11| Homo sapiens BAC clone RP11-334N15 from 2, compl... 40 5.6
66dbj|AP005513.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
67dbj|AP004067.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
68dbj|AP005158.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
69dbj|AP003898.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
70dbj|AP004617.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
71gb|AC007955.4|AC007955 Homo sapiens chromosome 14 clone CTD-3014... 40 5.6
72dbj|AK107101.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.6
73dbj|AK101579.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.6
74dbj|AK101578.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.6
75emb|AL049832.3|CNS0000G Human chromosome 14 DNA sequence BAC R-6... 40 5.6
76dbj|AP001462.3| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 5.6
77emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB1... 40 5.6
78gb|AF440523.1| Pseudomonas aeruginosa strain C genomic sequence,... 40 5.6
79emb|X97053.1|HSPLEC H.sapiens mRNA for plectin 40 5.6 
>ref|NM_189035.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3246

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 59/66 (89%), Gaps = 3/66 (4%)
 Strand = Plus / Plus

                                                                       
Query: 355 ggaggagaggcggcgccggttctcgagtctacgcagcgtccgctggcgggtcgatctcgg 414
           |||||||||||||||   |||||||| ||| ||| ||||||| |||||||||||||||||
Sbjct: 453 ggaggagaggcggcg---gttctcgaatcttcgcggcgtccggtggcgggtcgatctcgg 509

                 
Query: 415 catcct 420
           ||||||
Sbjct: 510 catcct 515



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 200 cccggaaagatcctccttttcttgg 224
           |||| ||||||||||||||||||||
Sbjct: 263 cccgaaaagatcctccttttcttgg 287
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 59/66 (89%), Gaps = 3/66 (4%)
 Strand = Plus / Plus

                                                                            
Query: 355      ggaggagaggcggcgccggttctcgagtctacgcagcgtccgctggcgggtcgatctcgg 414
                |||||||||||||||   |||||||| ||| ||| ||||||| |||||||||||||||||
Sbjct: 25706023 ggaggagaggcggcg---gttctcgaatcttcgcggcgtccggtggcgggtcgatctcgg 25706079

                      
Query: 415      catcct 420
                ||||||
Sbjct: 25706080 catcct 25706085



 Score = 48.1 bits (24), Expect = 0.023
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                       
Query: 349     ggcggaggaggagaggcggcgccg 372
               ||||||||||||||||||||||||
Sbjct: 5176961 ggcggaggaggagaggcggcgccg 5176984



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 200      cccggaaagatcctccttttcttgg 224
                |||| ||||||||||||||||||||
Sbjct: 25705833 cccgaaaagatcctccttttcttgg 25705857



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 352      ggaggaggagaggcggcgccg 372
                |||||||||||||||||||||
Sbjct: 25271933 ggaggaggagaggcggcgccg 25271913



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 342      cggccatggcggaggaggag 361
                ||||||||||||||||||||
Sbjct: 20650686 cggccatggcggaggaggag 20650705



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 350      gcggaggaggagaggcggcg 369
                ||||||||||||||||||||
Sbjct: 19819660 gcggaggaggagaggcggcg 19819641
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>dbj|AP004708.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0700D12
          Length = 145177

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 59/66 (89%), Gaps = 3/66 (4%)
 Strand = Plus / Plus

                                                                         
Query: 355   ggaggagaggcggcgccggttctcgagtctacgcagcgtccgctggcgggtcgatctcgg 414
             |||||||||||||||   |||||||| ||| ||| ||||||| |||||||||||||||||
Sbjct: 83771 ggaggagaggcggcg---gttctcgaatcttcgcggcgtccggtggcgggtcgatctcgg 83827

                   
Query: 415   catcct 420
             ||||||
Sbjct: 83828 catcct 83833



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 200   cccggaaagatcctccttttcttgg 224
             |||| ||||||||||||||||||||
Sbjct: 83581 cccgaaaagatcctccttttcttgg 83605
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>dbj|AK066731.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013074L23, full
           insert sequence
          Length = 3245

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 59/66 (89%), Gaps = 3/66 (4%)
 Strand = Plus / Plus

                                                                       
Query: 355 ggaggagaggcggcgccggttctcgagtctacgcagcgtccgctggcgggtcgatctcgg 414
           |||||||||||||||   |||||||| ||| ||| ||||||| |||||||||||||||||
Sbjct: 452 ggaggagaggcggcg---gttctcgaatcttcgcggcgtccggtggcgggtcgatctcgg 508

                 
Query: 415 catcct 420
           ||||||
Sbjct: 509 catcct 514



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 200 cccggaaagatcctccttttcttgg 224
           |||| ||||||||||||||||||||
Sbjct: 263 cccgaaaagatcctccttttcttgg 287
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>ref|XM_480447.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 399

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 349 ggcggaggaggagaggcggcgccg 372
           ||||||||||||||||||||||||
Sbjct: 345 ggcggaggaggagaggcggcgccg 368
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>dbj|AP005531.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:B1099H05
          Length = 186036

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 349   ggcggaggaggagaggcggcgccg 372
             ||||||||||||||||||||||||
Sbjct: 45317 ggcggaggaggagaggcggcgccg 45340
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>dbj|AP004656.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0020B10
          Length = 136175

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                      
Query: 349    ggcggaggaggagaggcggcgccg 372
              ||||||||||||||||||||||||
Sbjct: 126725 ggcggaggaggagaggcggcgccg 126748
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 347      atggcggaggaggagaggcggc 368
                ||||||||||||||||||||||
Sbjct: 28508470 atggcggaggaggagaggcggc 28508449
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 347      atggcggaggaggagaggcggc 368
                ||||||||||||||||||||||
Sbjct: 28599794 atggcggaggaggagaggcggc 28599773
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>gb|AC082645.13|AC082645 Oryza sativa chromosome 3 BAC OSJNBb0033N16 genomic sequence, complete
              sequence
          Length = 143681

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 347    atggcggaggaggagaggcggc 368
              ||||||||||||||||||||||
Sbjct: 102600 atggcggaggaggagaggcggc 102579
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>ref|NM_188047.1| Oryza sativa (japonica cultivar-group), Ozsa8467 predicted mRNA
          Length = 936

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 349 ggcggaggaggagaggcggcg 369
           |||||||||||||||||||||
Sbjct: 415 ggcggaggaggagaggcggcg 435
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>ref|XM_483286.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 702

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 352 ggaggaggagaggcggcgccg 372
           |||||||||||||||||||||
Sbjct: 565 ggaggaggagaggcggcgccg 585
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>gb|AC135258.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0097K08 map C827S, complete sequence
          Length = 137870

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 349   ggcggaggaggagaggcggcg 369
             |||||||||||||||||||||
Sbjct: 69019 ggcggaggaggagaggcggcg 69039
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>gb|AC147811.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0026P08 map near C827S, complete sequence
          Length = 148676

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 349   ggcggaggaggagaggcggcg 369
             |||||||||||||||||||||
Sbjct: 26756 ggcggaggaggagaggcggcg 26736
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>ref|XM_548208.2| PREDICTED: Canis familiaris similar to WD-repeat protein 50
           (LOC491088), mRNA
          Length = 1822

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 349 ggcggaggaggagaggcggcgccgg 373
           |||||||||||||||||||| ||||
Sbjct: 192 ggcggaggaggagaggcggctccgg 216
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>emb|AL138897.10| Human DNA sequence from clone RP11-231D11 on chromosome 10, complete
             sequence
          Length = 59779

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 125   cagaggaggagaggagaattc 145
             |||||||||||||||||||||
Sbjct: 44655 cagaggaggagaggagaattc 44635
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 349     ggcggaggaggagaggcggcg 369
               |||||||||||||||||||||
Sbjct: 7113536 ggcggaggaggagaggcggcg 7113516



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 350      gcggaggaggagaggcggcg 369
                ||||||||||||||||||||
Sbjct: 23080337 gcggaggaggagaggcggcg 23080356
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 349      ggcggaggaggagaggcggcg 369
                |||||||||||||||||||||
Sbjct: 29407709 ggcggaggaggagaggcggcg 29407689
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 349     ggcggaggaggagaggcggcg 369
               |||||||||||||||||||||
Sbjct: 9333908 ggcggaggaggagaggcggcg 9333928
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>dbj|AP001081.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
            clone:P0693B08
          Length = 140812

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 349  ggcggaggaggagaggcggcg 369
            |||||||||||||||||||||
Sbjct: 4235 ggcggaggaggagaggcggcg 4255
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>dbj|AP001073.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0667A10
          Length = 152237

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 349    ggcggaggaggagaggcggcg 369
              |||||||||||||||||||||
Sbjct: 110502 ggcggaggaggagaggcggcg 110522
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>dbj|AP005816.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:B1168A08
          Length = 138135

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 352    ggaggaggagaggcggcgccg 372
              |||||||||||||||||||||
Sbjct: 137056 ggaggaggagaggcggcgccg 137036
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>dbj|AP006049.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0016N23
          Length = 147336

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 352   ggaggaggagaggcggcgccg 372
             |||||||||||||||||||||
Sbjct: 47118 ggaggaggagaggcggcgccg 47098
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>dbj|AK111032.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-174-H10, full
           insert sequence
          Length = 728

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 349 ggcggaggaggagaggcggcg 369
           |||||||||||||||||||||
Sbjct: 240 ggcggaggaggagaggcggcg 220
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>dbj|AP004333.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0034A04
          Length = 151263

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 349   ggcggaggaggagaggcggcg 369
             |||||||||||||||||||||
Sbjct: 70631 ggcggaggaggagaggcggcg 70611
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>gb|AY105436.1| Zea mays PCO078991 mRNA sequence
          Length = 938

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 122 gtacagaggaggagaggagaa 142
           |||||||||||||||||||||
Sbjct: 59  gtacagaggaggagaggagaa 79
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 349     ggcggaggaggagaggcggcg 369
               |||||||||||||||||||||
Sbjct: 7179507 ggcggaggaggagaggcggcg 7179487



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 350      gcggaggaggagaggcggcg 369
                ||||||||||||||||||||
Sbjct: 23390247 gcggaggaggagaggcggcg 23390266
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>ref|XM_507231.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBa0007M04.44
           mRNA
          Length = 1644

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 350 gcggaggaggagaggcggcg 369
           ||||||||||||||||||||
Sbjct: 129 gcggaggaggagaggcggcg 110
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>ref|XM_482398.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1644

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 350 gcggaggaggagaggcggcg 369
           ||||||||||||||||||||
Sbjct: 129 gcggaggaggagaggcggcg 110
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>gb|BT018424.1| Zea mays clone EL01N0361G03.d mRNA sequence
          Length = 1608

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 352 ggaggaggagaggcggcgcc 371
           ||||||||||||||||||||
Sbjct: 938 ggaggaggagaggcggcgcc 957
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>gb|AC120885.3| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0042J05, complete sequence
          Length = 150295

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 350   gcggaggaggagaggcggcg 369
             ||||||||||||||||||||
Sbjct: 96340 gcggaggaggagaggcggcg 96359
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>ref|XM_419284.1| PREDICTED: Gallus gallus similar to MGC15407 protein (LOC421209),
           mRNA
          Length = 2105

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 338 ggcccggccatggcggaggaggag 361
           |||||||||||||||| |||||||
Sbjct: 211 ggcccggccatggcggcggaggag 234
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>gb|AC163769.4| Pan troglodytes BAC clone CH251-59O12 from chromosome unknown, complete
             sequence
          Length = 185010

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 80    cagccccctcccccagctgaagca 103
             ||||| ||||||||||||||||||
Sbjct: 82363 cagcctcctcccccagctgaagca 82386
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>gb|AY480051.1| Homo sapiens plectin 11 mRNA, complete cds
          Length = 14797

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 349  ggcggaggaggagaggcggcgccg 372
            ||||||||||||| ||||||||||
Sbjct: 6057 ggcggaggaggagcggcggcgccg 6080
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>gb|AY480050.1| Homo sapiens plectin 10 mRNA, complete cds
          Length = 14689

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 349  ggcggaggaggagaggcggcgccg 372
            ||||||||||||| ||||||||||
Sbjct: 5949 ggcggaggaggagcggcggcgccg 5972
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>gb|AY480049.1| Homo sapiens plectin 8 mRNA, complete cds
          Length = 14675

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 349  ggcggaggaggagaggcggcgccg 372
            ||||||||||||| ||||||||||
Sbjct: 5935 ggcggaggaggagcggcggcgccg 5958
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>gb|AY480048.1| Homo sapiens plectin 7 mRNA, complete cds
          Length = 14646

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 349  ggcggaggaggagaggcggcgccg 372
            ||||||||||||| ||||||||||
Sbjct: 5906 ggcggaggaggagcggcggcgccg 5929
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>gb|AY480047.1| Homo sapiens plectin 6 mRNA, complete cds
          Length = 15249

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 349  ggcggaggaggagaggcggcgccg 372
            ||||||||||||| ||||||||||
Sbjct: 6509 ggcggaggaggagcggcggcgccg 6532
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>gb|AY480046.1| Homo sapiens plectin 3 mRNA, complete cds
          Length = 14751

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 349  ggcggaggaggagaggcggcgccg 372
            ||||||||||||| ||||||||||
Sbjct: 6011 ggcggaggaggagcggcggcgccg 6034
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>gb|AY480045.1| Homo sapiens plectin 2 mRNA, complete cds
          Length = 14626

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 349  ggcggaggaggagaggcggcgccg 372
            ||||||||||||| ||||||||||
Sbjct: 5886 ggcggaggaggagcggcggcgccg 5909
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>gb|AY480044.1| Homo sapiens plectin 1 mRNA, complete cds
          Length = 14755

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 349  ggcggaggaggagaggcggcgccg 372
            ||||||||||||| ||||||||||
Sbjct: 6015 ggcggaggaggagcggcggcgccg 6038
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>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome
          Length = 3928089

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 341     ccggccatggcggaggagga 360
               ||||||||||||||||||||
Sbjct: 2613175 ccggccatggcggaggagga 2613156
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>ref|XM_752628.1| Ustilago maydis 521 hypothetical protein (UM01574.1) partial mRNA
          Length = 3654

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 69  cccggccaaatcagccccctcccc 92
           |||||||||||||||||| |||||
Sbjct: 733 cccggccaaatcagccccgtcccc 756
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>ref|NM_000445.2| Homo sapiens plectin 1, intermediate filament binding protein 500kDa
            (PLEC1), transcript variant 1, mRNA
          Length = 14755

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 349  ggcggaggaggagaggcggcgccg 372
            ||||||||||||| ||||||||||
Sbjct: 6015 ggcggaggaggagcggcggcgccg 6038
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>ref|NM_201378.1| Homo sapiens plectin 1, intermediate filament binding protein 500kDa
            (PLEC1), transcript variant 2, mRNA
          Length = 14626

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 349  ggcggaggaggagaggcggcgccg 372
            ||||||||||||| ||||||||||
Sbjct: 5886 ggcggaggaggagcggcggcgccg 5909
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>ref|NM_201379.1| Homo sapiens plectin 1, intermediate filament binding protein 500kDa
            (PLEC1), transcript variant 3, mRNA
          Length = 14751

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 349  ggcggaggaggagaggcggcgccg 372
            ||||||||||||| ||||||||||
Sbjct: 6011 ggcggaggaggagcggcggcgccg 6034
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>ref|NM_201380.2| Homo sapiens plectin 1, intermediate filament binding protein 500kDa
            (PLEC1), transcript variant 6, mRNA
          Length = 15249

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 349  ggcggaggaggagaggcggcgccg 372
            ||||||||||||| ||||||||||
Sbjct: 6509 ggcggaggaggagcggcggcgccg 6532
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>ref|NM_201381.1| Homo sapiens plectin 1, intermediate filament binding protein 500kDa
            (PLEC1), transcript variant 7, mRNA
          Length = 14646

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 349  ggcggaggaggagaggcggcgccg 372
            ||||||||||||| ||||||||||
Sbjct: 5906 ggcggaggaggagcggcggcgccg 5929
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>ref|NM_201383.1| Homo sapiens plectin 1, intermediate filament binding protein 500kDa
            (PLEC1), transcript variant 10, mRNA
          Length = 14689

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 349  ggcggaggaggagaggcggcgccg 372
            ||||||||||||| ||||||||||
Sbjct: 5949 ggcggaggaggagcggcggcgccg 5972
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>ref|NM_201382.1| Homo sapiens plectin 1, intermediate filament binding protein 500kDa
            (PLEC1), transcript variant 8, mRNA
          Length = 14675

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 349  ggcggaggaggagaggcggcgccg 372
            ||||||||||||| ||||||||||
Sbjct: 5935 ggcggaggaggagcggcggcgccg 5958
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>ref|NM_201384.1| Homo sapiens plectin 1, intermediate filament binding protein 500kDa
            (PLEC1), transcript variant 11, mRNA
          Length = 14797

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 349  ggcggaggaggagaggcggcgccg 372
            ||||||||||||| ||||||||||
Sbjct: 6057 ggcggaggaggagcggcggcgccg 6080
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>ref|XM_503150.1| Yarrowia lipolytica CLIB122, YALI0D22418g predicted mRNA
          Length = 1125

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 343 ggccatggcggaggaggaga 362
           ||||||||||||||||||||
Sbjct: 171 ggccatggcggaggaggaga 190
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>emb|AL357500.17| Human DNA sequence from clone RP11-242O24 on chromosome 1 Contains the
             3' end of the EPB41 gene for erythrocyte membrane protein
             band 4.1 (elliptocytosis 1, RH-linked), three novel genes,
             the 3' end of the SFRS4 gene for splicing factor
             arginine/serine-rich 4 and a CpG island, complete sequence
          Length = 112392

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 353   gaggaggagaggcggcgccg 372
             ||||||||||||||||||||
Sbjct: 58312 gaggaggagaggcggcgccg 58331
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>emb|AL158072.9| Human DNA sequence from clone RP11-30O14 on chromosome 9p21.1-21.3,
              complete sequence
          Length = 200840

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 252    tatatatagcgttttggcca 271
              ||||||||||||||||||||
Sbjct: 148776 tatatatagcgttttggcca 148757
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>gb|AC109322.16| Homo sapiens chromosome 8, clone CTD-3065J16, complete sequence
          Length = 215342

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 349    ggcggaggaggagaggcggcgccg 372
              ||||||||||||| ||||||||||
Sbjct: 147894 ggcggaggaggagcggcggcgccg 147917
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>emb|Z54367.1|HSPLECTIN H.sapiens gene for plectin
          Length = 14189

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 349  ggcggaggaggagaggcggcgccg 372
            ||||||||||||| ||||||||||
Sbjct: 6339 ggcggaggaggagcggcggcgccg 6362
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>gb|DP000059.1| Carollia perspicillata target 117 genomic scaffold
          Length = 359132

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 118    gcgggtacagaggaggagag 137
              ||||||||||||||||||||
Sbjct: 115181 gcgggtacagaggaggagag 115200
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>ref|XM_688630.1| PREDICTED: Danio rerio similar to Golgi autoantigen, golgin subfamily
            a, 2 (LOC565351), mRNA
          Length = 2256

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 127  gaggaggagaggagaattca 146
            ||||||||||||||||||||
Sbjct: 1432 gaggaggagaggagaattca 1451
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>gb|U53204.1|HSU53204 Human plectin (PLEC1) mRNA, complete cds
          Length = 14800

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 349  ggcggaggaggagaggcggcgccg 372
            ||||||||||||| ||||||||||
Sbjct: 6060 ggcggaggaggagcggcggcgccg 6083
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>gb|U63610.1|HSPLEC1S3 Human plectin (PLEC1) gene, exons 3-32, and complete cds
          Length = 22693

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 349   ggcggaggaggagaggcggcgccg 372
             ||||||||||||| ||||||||||
Sbjct: 13786 ggcggaggaggagcggcggcgccg 13809
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>gb|AC011712.6|AC011712 Homo sapiens chromosome 18, clone RP11-188I24, complete sequence
          Length = 145165

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 232   ttgctacagataaacaaagctata 255
             |||||||||||||||||| |||||
Sbjct: 82439 ttgctacagataaacaaaactata 82416
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>gb|AC000134.14| Homo sapiens Chromosome 11q13 BAC Clone 137c7, complete sequence
          Length = 203300

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 80    cagccccctcccccagctgaagca 103
             ||||| ||||||||||||||||||
Sbjct: 73744 cagcctcctcccccagctgaagca 73721
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>emb|BX934579.2| Gallus gallus finished cDNA, clone ChEST87a17
          Length = 1113

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 338 ggcccggccatggcggaggaggag 361
           |||||||||||||||| |||||||
Sbjct: 72  ggcccggccatggcggcggaggag 95
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 355      ggaggagaggcggcgccggt 374
                ||||||||||||||||||||
Sbjct: 25532694 ggaggagaggcggcgccggt 25532713
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>gb|AC016723.11| Homo sapiens BAC clone RP11-334N15 from 2, complete sequence
          Length = 202001

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 77    aatcagccccctcccccagc 96
             ||||||||||||||||||||
Sbjct: 93908 aatcagccccctcccccagc 93927
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>dbj|AP005513.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OSJNBa0014E22
          Length = 157627

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 355  ggaggagaggcggcgccggt 374
            ||||||||||||||||||||
Sbjct: 2741 ggaggagaggcggcgccggt 2760
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>dbj|AP004067.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1581_H09
          Length = 86699

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 355   ggaggagaggcggcgccggt 374
             ||||||||||||||||||||
Sbjct: 24093 ggaggagaggcggcgccggt 24112
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>dbj|AP005158.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OSJNBa0007M04
          Length = 176293

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 350    gcggaggaggagaggcggcg 369
              ||||||||||||||||||||
Sbjct: 148611 gcggaggaggagaggcggcg 148592
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>dbj|AP003898.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OJ1663_D06
          Length = 139103

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 342    cggccatggcggaggaggag 361
              ||||||||||||||||||||
Sbjct: 125058 cggccatggcggaggaggag 125077
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>dbj|AP004617.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0479C08
          Length = 152460

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 342   cggccatggcggaggaggag 361
             ||||||||||||||||||||
Sbjct: 23139 cggccatggcggaggaggag 23158
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>gb|AC007955.4|AC007955 Homo sapiens chromosome 14 clone CTD-3014H8 and RP11-285P21 map
             14q24.3, complete sequence
          Length = 163312

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 211   cctccttttcttggtttcca 230
             ||||||||||||||||||||
Sbjct: 54372 cctccttttcttggtttcca 54353
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>dbj|AK107101.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-122-A04, full
           insert sequence
          Length = 1007

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 350 gcggaggaggagaggcggcg 369
           ||||||||||||||||||||
Sbjct: 253 gcggaggaggagaggcggcg 272
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>dbj|AK101579.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033050N09, full
           insert sequence
          Length = 1643

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 350 gcggaggaggagaggcggcg 369
           ||||||||||||||||||||
Sbjct: 128 gcggaggaggagaggcggcg 109
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>dbj|AK101578.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033050N07, full
           insert sequence
          Length = 1643

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 350 gcggaggaggagaggcggcg 369
           ||||||||||||||||||||
Sbjct: 128 gcggaggaggagaggcggcg 109
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>emb|AL049832.3|CNS0000G Human chromosome 14 DNA sequence BAC R-63D17 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 177172

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 211   cctccttttcttggtttcca 230
             ||||||||||||||||||||
Sbjct: 62479 cctccttttcttggtttcca 62498
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>dbj|AP001462.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-869B15, complete
            sequence
          Length = 106886

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 80   cagccccctcccccagctgaagca 103
            ||||| ||||||||||||||||||
Sbjct: 6397 cagcctcctcccccagctgaagca 6374
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>emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB122 of Yarrowia lipolytica
          Length = 3633272

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 343     ggccatggcggaggaggaga 362
               ||||||||||||||||||||
Sbjct: 2856431 ggccatggcggaggaggaga 2856412
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>gb|AF440523.1| Pseudomonas aeruginosa strain C genomic sequence, gene island PAGI-2(C)
          Length = 158230

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 341   ccggccatggcggaggagga 360
             ||||||||||||||||||||
Sbjct: 28801 ccggccatggcggaggagga 28820
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>emb|X97053.1|HSPLEC H.sapiens mRNA for plectin
          Length = 1698

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 349 ggcggaggaggagaggcggcgccg 372
           ||||||||||||| ||||||||||
Sbjct: 660 ggcggaggaggagcggcggcgccg 683


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,961,821
Number of Sequences: 3902068
Number of extensions: 3961821
Number of successful extensions: 94292
Number of sequences better than 10.0: 79
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 93256
Number of HSP's gapped (non-prelim): 1032
length of query: 420
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 398
effective length of database: 17,147,199,772
effective search space: 6824585509256
effective search space used: 6824585509256
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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