>EXOC2_ARATH (Q8S3U9) Exocyst complex component 2 (Exocyst complex component|
           Sec5)
          Length = 1090

 Score = 76.3 bits (186), Expect = 2e-14
 Identities = 45/89 (50%), Positives = 58/89 (65%), Gaps = 6/89 (6%)
 Frame = +3

Query: 45  SDS-DVDEDELLQMALQEQAARDLSHQRP--AGANKPVVNLVRPP---APSSXXXXXXXX 206
           SDS D+DEDELLQMAL+EQA RDL++Q+P  + A KPV NLV+ P    P +        
Sbjct: 3   SDSNDLDEDELLQMALKEQAKRDLTYQKPPSSSARKPVANLVQQPRQQKPVAAAAAPPKK 62

Query: 207 XXXXQPSREGDEDDDSDVEMLSISSGDED 293
                     DED++S+VE+LSISSGD+D
Sbjct: 63  SAAAVRKPSMDEDEESEVELLSISSGDDD 91

>SOX12_MOUSE (Q04890) SOX-12 protein|
          Length = 314

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
 Frame = +3

Query: 48  DSDVDEDELLQMALQEQAARDLSHQRPAG--ANKPVVNLVRPPAPSSXXXXXXXXXXXXQ 221
           D + +E+ELL++ L E   R+L    PAG  A  P     R   PS              
Sbjct: 165 DDEDEEEELLEVRLLETPGRELWRMVPAGRAARGPA---ERAQGPSGEGAAASAASPTLS 221

Query: 222 PSREGDEDDDSDVEMLSISSGDED 293
              E +E+++   E  +   G+E+
Sbjct: 222 EDEEPEEEEE---EAATAEEGEEE 242

>VE5B_BPV4 (P08349) Probable protein E5B|
          Length = 95

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = +2

Query: 11 RSRPRPDTSGHERQRCRRGRAPPD 82
          RSR R    GH+  R RRGR P D
Sbjct: 17 RSRLRDRDHGHDHDRLRRGRTPVD 40

>RPF1_DROME (Q9VKB4) Probable ribosome production factor 1 (Ribosome biogenesis|
           protein RPF1)
          Length = 394

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 18/71 (25%), Positives = 25/71 (35%)
 Frame = +3

Query: 45  SDSDVDEDELLQMALQEQAARDLSHQRPAGANKPVVNLVRPPAPSSXXXXXXXXXXXXQP 224
           SDS  DE+E   + +QE    D S +  A ++K                           
Sbjct: 19  SDSSFDEEEPQDLEVQEGPVTDSSDEEAASSSKKTAKQGEASEDLKEEDDDDDEEENDDD 78

Query: 225 SREGDEDDDSD 257
             E D+DDD D
Sbjct: 79  DEEEDDDDDDD 89

>LIN39_CAEEL (P34684) Homeobox protein lin-39 (Abnormal cell lineage protein 39)|
          Length = 253

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 231 EGDEDDDSDVEMLSISSGDED 293
           EGD+DDD D +   IS  D+D
Sbjct: 119 EGDDDDDKDDDKKGISGDDDD 139

>EF1B1_ARATH (Q84WM9) Elongation factor 1-beta 1 (EF-1-beta 1) (Elongation|
           factor 1B-alpha 1) (eEF-1B alpha 1) (Elongation factor
           1-beta' 1) (EF-1-beta' 1)
          Length = 228

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +3

Query: 219 QPSREGDEDDDSDVEMLSISSGDE 290
           +P+ +GD DDD D+++ +  + DE
Sbjct: 94  EPAADGDGDDDDDIDLFADETEDE 117

>ZCHC8_CHICK (Q5F3D1) Zinc finger CCHC domain-containing protein 8|
          Length = 613

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 20/81 (24%), Positives = 32/81 (39%)
 Frame = +3

Query: 39  AMSDSDVDEDELLQMALQEQAARDLSHQRPAGANKPVVNLVRPPAPSSXXXXXXXXXXXX 218
           A++D D+D D  ++++ + Q       Q P     PV++   PP P              
Sbjct: 334 AVADMDIDSD--VEVSQRSQTTNSFQFQPPLPPGPPVIS-TPPPLPQGTPPLTPRSLTPT 390

Query: 219 QPSREGDEDDDSDVEMLSISS 281
           QPS        + V  L+ SS
Sbjct: 391 QPSTPTHPPLPNTVSSLNPSS 411

>CHM4C_XENLA (Q6GNN8) Charged multivesicular body protein 4c|
           (Chromatin-modifying protein 4c) (CHMP4c)
          Length = 227

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 25/73 (34%), Positives = 35/73 (47%)
 Frame = +3

Query: 54  DVDEDELLQMALQEQAARDLSHQRPAGANKPVVNLVRPPAPSSXXXXXXXXXXXXQPSRE 233
           + DEDELL+  L+E    DL+ Q        + N+  P  PSS              SR+
Sbjct: 162 EFDEDELLE-ELEELEQEDLNSQ--------MANVNLPSVPSSKLPSTKLPSRPAS-SRK 211

Query: 234 GDEDDDSDVEMLS 272
             EDDD D++ML+
Sbjct: 212 KVEDDD-DMQMLA 223

>BIK1_YEAST (P11709) Nuclear fusion protein BIK1|
          Length = 440

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 6/38 (15%)
 Frame = +3

Query: 54  DVDEDELLQMALQ------EQAARDLSHQRPAGANKPV 149
           D + ++LL +  Q      E   R+LSH +P GAN+ V
Sbjct: 269 DAENEQLLAVVSQLHEEIKENEERNLSHNQPTGANEDV 306

>NUCL_RAT (P13383) Nucleolin (Protein C23)|
          Length = 712

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 22/84 (26%), Positives = 32/84 (38%), Gaps = 7/84 (8%)
 Frame = +3

Query: 48  DSDVDEDELLQMALQEQAARDLSHQRPAGANKPVVNLVRP-------PAPSSXXXXXXXX 206
           DSD DEDE      +++   D           PVV  V+P       PA           
Sbjct: 143 DSDEDEDE------EDEDDSDEDEDEEDEFEPPVVKGVKPAKAAPAAPASEDEDEEDDDD 196

Query: 207 XXXXQPSREGDEDDDSDVEMLSIS 278
                   E +E+DDS+ E++ I+
Sbjct: 197 EDDDDDDEEEEEEDDSEEEVMEIT 220


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,902,753
Number of Sequences: 219361
Number of extensions: 253324
Number of successful extensions: 2281
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2155
length of database: 80,573,946
effective HSP length: 86
effective length of database: 61,708,900
effective search space used: 1481013600
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)