ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl20f11 |
|---|---|
| Clone Library Name | barley_pub |
>SND1_BOVIN (Q863B3) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) Length = 910 Score = 77.8 bits (190), Expect = 1e-14 Identities = 43/96 (44%), Positives = 57/96 (59%), Gaps = 9/96 (9%) Frame = +2 Query: 173 RGKVKAVTSGDCLLIMGSTKAEVPPEKSITLSYLMAPRLARRGGV---------DEPFAW 325 RG VK V SG +++ G + PPE+ I LS + A LARR V DEP+A+ Sbjct: 21 RGIVKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLARRAAVAQPDAKDTPDEPWAF 80 Query: 326 ESREFLRKLCVGKEVTFRVDYTAPNIGREFGTVYLG 433 +REFLRK +GKEV F ++ P GRE+G +YLG Sbjct: 81 PAREFLRKKLIGKEVCFTIENKTPQ-GREYGMIYLG 115 Score = 41.6 bits (96), Expect = 9e-04 Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 10/83 (12%) Frame = +2 Query: 179 KVKAVTSGDCLLIMGSTKAEVPPEKSITLSYLMAPRLARRGGVDE----------PFAWE 328 KV V + D +++ K K+I LS + PRL D+ P+ +E Sbjct: 346 KVMQVLNADAIVV----KLNSGDYKTIHLSSIRPPRLEGENTQDKNKKLRPLYDIPYMFE 401 Query: 329 SREFLRKLCVGKEVTFRVDYTAP 397 +REFLRK +GK+V VDY P Sbjct: 402 AREFLRKKLIGKKVNVTVDYIRP 424
>SND1_MOUSE (Q78PY7) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) Length = 910 Score = 77.4 bits (189), Expect = 1e-14 Identities = 47/115 (40%), Positives = 64/115 (55%), Gaps = 15/115 (13%) Frame = +2 Query: 134 AIMASNTGASGW------LRGKVKAVTSGDCLLIMGSTKAEVPPEKSITLSYLMAPRLAR 295 A A ++G+SG RG VK V SG +++ G + PPE+ I LS + A LAR Sbjct: 2 ASSAQSSGSSGGPAVPTVQRGIVKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLAR 61 Query: 296 RGGV---------DEPFAWESREFLRKLCVGKEVTFRVDYTAPNIGREFGTVYLG 433 R DEP+A+ +REFLRK +GKEV F ++ P GRE+G +YLG Sbjct: 62 RAAATQPDGKDTPDEPWAFPAREFLRKKLIGKEVCFTIENKTPQ-GREYGMIYLG 115 Score = 40.8 bits (94), Expect = 0.001 Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 10/83 (12%) Frame = +2 Query: 179 KVKAVTSGDCLLIMGSTKAEVPPEKSITLSYLMAPRLAR----------RGGVDEPFAWE 328 KV V + D +++ K K+I LS + PRL R D P+ +E Sbjct: 346 KVMQVLNADAIVV----KLNSGDYKTIHLSSIRPPRLEGDNIQDKNKKLRPLYDIPYMFE 401 Query: 329 SREFLRKLCVGKEVTFRVDYTAP 397 +REFLRK +GK+V VDY P Sbjct: 402 AREFLRKKLIGKKVNVTVDYIRP 424
>SND1_BRARE (Q7ZT42) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) (4SNc-Tudor domain protein) Length = 897 Score = 77.4 bits (189), Expect = 1e-14 Identities = 45/108 (41%), Positives = 61/108 (56%), Gaps = 9/108 (8%) Frame = +2 Query: 137 IMASNTGASGWLRGKVKAVTSGDCLLIMGSTKAEVPPEKSITLSYLMAPRLARRG----- 301 + +S A RG VK V SG +++ G + PPE+ I LS + A LARR Sbjct: 9 VQSSQASAPQLQRGIVKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGALARRAIQGQP 68 Query: 302 ----GVDEPFAWESREFLRKLCVGKEVTFRVDYTAPNIGREFGTVYLG 433 DEP+A+++REF+RK +GKEV F V+ P GRE+G VYLG Sbjct: 69 DTKDTPDEPWAFQAREFMRKKVIGKEVCFTVENKTPQ-GREYGMVYLG 115 Score = 38.9 bits (89), Expect = 0.006 Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 11/81 (13%) Frame = +2 Query: 179 KVKAVTSGDCLLIMGSTKAEVPPEKSITLSYLMAPRLAR-----------RGGVDEPFAW 325 KV V + D +++ K K+I LS + PRL R D P+ + Sbjct: 347 KVMQVVNADAIVV----KLNSGEYKTIHLSSIRPPRLEGEEKNKDKDKRFRPLYDIPYMF 402 Query: 326 ESREFLRKLCVGKEVTFRVDY 388 E+REFLRK +GK+V VDY Sbjct: 403 EAREFLRKKLIGKKVNVTVDY 423
>SND1_RAT (Q66X93) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) (SND p102) (p105 coactivator) Length = 909 Score = 77.0 bits (188), Expect = 2e-14 Identities = 46/112 (41%), Positives = 63/112 (56%), Gaps = 15/112 (13%) Frame = +2 Query: 143 ASNTGASGW------LRGKVKAVTSGDCLLIMGSTKAEVPPEKSITLSYLMAPRLARRGG 304 A ++G+SG RG VK V SG +++ G + PPE+ I LS + A LARR Sbjct: 4 AQSSGSSGGPAVPTVQRGIVKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLARRAA 63 Query: 305 V---------DEPFAWESREFLRKLCVGKEVTFRVDYTAPNIGREFGTVYLG 433 DEP+A+ +REFLRK +GKEV F ++ P GRE+G +YLG Sbjct: 64 ATQPDGKDTPDEPWAFPAREFLRKKLIGKEVCFTIENKTPQ-GREYGMIYLG 114 Score = 41.2 bits (95), Expect = 0.001 Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 10/83 (12%) Frame = +2 Query: 179 KVKAVTSGDCLLIMGSTKAEVPPEKSITLSYLMAPRLAR----------RGGVDEPFAWE 328 KV V + D +++ K K+I LS + PRL R D P+ +E Sbjct: 345 KVMQVLNADAIVV----KLNSGDYKTIHLSSIRPPRLEGDNIQDKNKKLRPLYDIPYMFE 400 Query: 329 SREFLRKLCVGKEVTFRVDYTAP 397 +REFLRK +GK+V+ VDY P Sbjct: 401 AREFLRKKLIGKKVSVTVDYIRP 423
>SND1_HUMAN (Q7KZF4) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) (EBNA2 coactivator p100) Length = 910 Score = 75.9 bits (185), Expect = 4e-14 Identities = 41/96 (42%), Positives = 56/96 (58%), Gaps = 9/96 (9%) Frame = +2 Query: 173 RGKVKAVTSGDCLLIMGSTKAEVPPEKSITLSYLMAPRLARRGGV---------DEPFAW 325 RG +K V SG +++ G + PPE+ I LS + A LARR DEP+A+ Sbjct: 21 RGIIKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLARRAAATQPDAKDTPDEPWAF 80 Query: 326 ESREFLRKLCVGKEVTFRVDYTAPNIGREFGTVYLG 433 +REFLRK +GKEV F ++ P GRE+G +YLG Sbjct: 81 PAREFLRKKLIGKEVCFTIENKTPQ-GREYGMIYLG 115 Score = 41.6 bits (96), Expect = 9e-04 Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 10/83 (12%) Frame = +2 Query: 179 KVKAVTSGDCLLIMGSTKAEVPPEKSITLSYLMAPRLARRGGVDE----------PFAWE 328 KV V + D +++ K K+I LS + PRL D+ P+ +E Sbjct: 346 KVMQVLNADAIVV----KLNSGDYKTIHLSSIRPPRLEGENTQDKNKKLRPLYDIPYMFE 401 Query: 329 SREFLRKLCVGKEVTFRVDYTAP 397 +REFLRK +GK+V VDY P Sbjct: 402 AREFLRKKLIGKKVNVTVDYIRP 424
>VG20_BPT4 (P13334) Structural protein of head (Tail tube protein Gp20)| Length = 524 Score = 30.8 bits (68), Expect = 1.5 Identities = 12/42 (28%), Positives = 25/42 (59%) Frame = -2 Query: 427 VDSAKFSPDVRSCVIHSECDLLSYAKFPQKLPAFPSKWLIDS 302 +D +KFSP +++ ++ D+L++ F +K +W +DS Sbjct: 113 LDKSKFSPKIKNMMLDEFSDVLNHLSFQRKGSDHFRRWYVDS 154
>HISX_BRAJA (P59397) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)| Length = 431 Score = 30.0 bits (66), Expect = 2.6 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 4/65 (6%) Frame = +2 Query: 110 LAAGQSQGAIMASNTGASGWLRGKVKAV----TSGDCLLIMGSTKAEVPPEKSITLSYLM 277 + AG S+ ++A +TG + W+ + A TS +LI S + EK++ Sbjct: 232 MIAGPSEVLVIADDTGNADWIAADLLAQAEHDTSAQSILITDSARLAADVEKAVEAQLKT 291 Query: 278 APRLA 292 PR A Sbjct: 292 LPRTA 296
>MBD6_HUMAN (Q96DN6) Methyl-CpG-binding domain protein 6 (Methyl-CpG-binding| protein MBD6) Length = 1003 Score = 30.0 bits (66), Expect = 2.6 Identities = 35/111 (31%), Positives = 45/111 (40%), Gaps = 2/111 (1%) Frame = -3 Query: 348 FLRNSLLSQANGSSTPPRRA-SLGAIRYDRVMDFSGGTSALVLPMMRRQSPEVTAFTLPL 172 FL +SLLS A + PP S R R S S+ + P RR T F L Sbjct: 318 FLASSLLSAAAKAQHPPLPPPSTLQGRRPRAQAPSASHSSSLRPSQRRPRRPPTVFRLLE 377 Query: 171 SH-PEAPVFDAMIAPWDWPAASGLRLPIRDPGEGVWPAG*SLLSRPDPDPN 22 P+ P AP P LP +P + + P+ SLL P P P+ Sbjct: 378 GRGPQTPRRSRPRAPA--PVPQPFSLP--EPSQPILPSVLSLLGLPTPGPS 424
>Y38K_CORSE (Q39635) Hypothetical 38.1 kDa protein| Length = 338 Score = 29.3 bits (64), Expect = 4.4 Identities = 16/38 (42%), Positives = 21/38 (55%) Frame = +2 Query: 314 PFAWESREFLRKLCVGKEVTFRVDYTAPNIGREFGTVY 427 PF E++E L KL VGK +T + Y GR G +Y Sbjct: 240 PFGKEAKEELIKLVVGKCLTVHI-YEEDRYGRSVGDIY 276
>HCN4_RABIT (Q9TV66) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 4 (Hyperpolarization-activated cation channel 4) (HAC-4) Length = 1175 Score = 28.9 bits (63), Expect = 5.8 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%) Frame = +2 Query: 113 AAG--QSQGAIMASNTGASGWLRGKVKAVTSGDCLLIMGS 226 AAG +S+GA + G RG K+ T+GDC GS Sbjct: 66 AAGGAESRGAALGGAADGEGPARGAAKSSTNGDCRRFRGS 105
>RIBD2_BUCAI (P57534) 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC| 1.1.1.193) (HTP reductase) Length = 207 Score = 28.5 bits (62), Expect = 7.6 Identities = 15/48 (31%), Positives = 25/48 (52%) Frame = -2 Query: 388 VIHSECDLLSYAKFPQKLPAFPSKWLIDSTTTSQPWGHKV*QSDGLLW 245 V + E D + + FP K+ P + +IDS QP H + ++ G +W Sbjct: 44 VRYKELDKKTLSIFPNKIFQHPIRVIIDSKNRVQP-SHNIIKTKGKIW 90
>CRTE_RHOCA (P17060) Geranylgeranyl pyrophosphate synthetase (EC 2.5.1.29)| (GGPP synthetase) (Farnesyltranstransferase) Length = 289 Score = 28.5 bits (62), Expect = 7.6 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 4/52 (7%) Frame = +2 Query: 188 AVTSGDCLLIMG----STKAEVPPEKSITLSYLMAPRLARRGGVDEPFAWES 331 AV +GD LLI G + V P++++ L + RGG+ AWES Sbjct: 106 AVLAGDSLLIRGFEVLADVGAVNPDRALKLISKLGQLSGARGGICAGQAWES 157
>YFI3_ECO57 (Q7BSX4) Putative endonuclease precursor (EC 3.1.-.-)| Length = 153 Score = 28.1 bits (61), Expect = 9.9 Identities = 27/89 (30%), Positives = 37/89 (41%) Frame = +2 Query: 170 LRGKVKAVTSGDCLLIMGSTKAEVPPEKSITLSYLMAPRLARRGGVDEPFAWESREFLRK 349 + G+V V GD + +M S KA I L + AP + G W S + ++ Sbjct: 21 IHGRVVRVLDGDTIEVMDSRKA-----VRIRLVNIDAPEKKQDYG-----RW-STDMMKS 69 Query: 350 LCVGKEVTFRVDYTAPNIGREFGTVYLGD 436 L GK VT + GR G VY D Sbjct: 70 LVAGKTVTVTY-FQRDRYGRMLGQVYAPD 97
>SMG1_DROME (Q70PP2) Serine/threonine-protein kinase Smg1 (EC 2.7.11.1)| Length = 3218 Score = 28.1 bits (61), Expect = 9.9 Identities = 12/24 (50%), Positives = 15/24 (62%) Frame = +1 Query: 232 GRGPAREVHHSVIPYGPKAGSSWW 303 G G R H+SVIP GP++G W Sbjct: 1958 GNGCYRAHHYSVIPLGPQSGLISW 1981 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 64,570,091 Number of Sequences: 219361 Number of extensions: 1372788 Number of successful extensions: 3749 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 3647 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3739 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2570413340 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
