ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl20f05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1COIA1_MOUSE (P39061) Collagen alpha-1(XVIII) chain precursor [Co... 28 8.5
2PANB_EMENI (Q9Y7B6) 3-methyl-2-oxobutanoate hydroxymethyltransfe... 28 8.5

>COIA1_MOUSE (P39061) Collagen alpha-1(XVIII) chain precursor [Contains:|
           Endostatin]
          Length = 1774

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = -3

Query: 106 HTQMRPCLAWSSLVFLPPLHSTTDGPPSPSP 14
           HT   P LAW   + L P  S   GPP P P
Sbjct: 414 HTNCHPFLAWFFCLLLAP--SCGPGPPPPLP 442



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>PANB_EMENI (Q9Y7B6) 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC|
           2.1.2.11) (Ketopantoate hydroxymethyltransferase)
          Length = 349

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = -3

Query: 106 HTQMRPCLAWSSLVFLPPLHSTTDGPPSPSPCFV 5
           H    P L  SS+  LP LHST      PSPC +
Sbjct: 15  HRPANPALPTSSI--LPVLHSTNVATRVPSPCAI 46


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,516,005
Number of Sequences: 219361
Number of extensions: 323022
Number of successful extensions: 1487
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1487
length of database: 80,573,946
effective HSP length: 45
effective length of database: 70,702,701
effective search space used: 1696864824
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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