>RDRP_TMOB (P90211) RNA-directed RNA polymerase (EC 2.7.7.48) (183 kDa|
           protein) [Contains: Methyltransferase/RNA helicase
           (MT/HEL) (126 kDa protein)]
          Length = 1616

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
 Frame = +2

Query: 317 CRASATSGGSRSYAL-------VPADELSRALARQNSSLALHNKHSFAEDSAGAYPLVLR 475
           C ++  S G R YA+       +PADEL  AL R+N    L+    FAE+      L+L 
Sbjct: 186 CESNRYSSGGRVYAISLHSLYDIPADELGAALLRKNVH-TLYAAFHFAEE------LLLE 238

Query: 476 ISVRE 490
           +S  E
Sbjct: 239 VSTVE 243

>Y1536_PSEAE (Q9I3H7) Hypothetical UPF0167 protein PA1536|
          Length = 179

 Score = 29.3 bits (64), Expect = 5.9
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +3

Query: 225 PRRRPHPHIMASGFSTASSTQISCCASTAG 314
           P  R HP  +ASG   AS+T   CC    G
Sbjct: 6   PHFRYHPEPLASGSIEASATTCQCCGKARG 35


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,070,224
Number of Sequences: 219361
Number of extensions: 606822
Number of successful extensions: 1829
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1828
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3420806017
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)