No.
Definition
Score (bits)
E Value
1 ref|NM_186392.1| Oryza sativa (japonica cultivar-group), mRNA
131
2e-27
2 dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D...
98
3e-17
3 dbj|AP005454.4| Oryza sativa (japonica cultivar-group) genomic D...
98
3e-17
4 dbj|AP003847.3| Oryza sativa (japonica cultivar-group) genomic D...
98
3e-17
5 dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D...
44
0.42
6 dbj|AK122037.1| Oryza sativa (japonica cultivar-group) cDNA clon...
44
0.42
7 gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome...
44
0.42
8 emb|AL713932.4|CNS07YPD Oryza sativa chromosome 12, . BAC OSJNBb...
44
0.42
9 emb|AL713937.3|CNS07YPI Oryza sativa chromosome 12, . BAC OJ1103...
44
0.42
10 gb|AY485644.1| Triticum monococcum phosphatidylserine decarboxyl...
42
1.7
11 gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp...
42
1.7
12 gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com...
42
1.7
13 gb|AE017286.1| Desulfovibrio vulgaris subsp. vulgaris str. Hilde...
42
1.7
14 emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos...
42
1.7
15 emb|BX294188.11| Zebrafish DNA sequence from clone DKEY-255G14, ...
42
1.7
16 gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome
42
1.7
17 ref|NM_187950.1| Oryza sativa (japonica cultivar-group), Ozsa837...
40
6.6
18 gb|CP000110.1| Synechococcus sp. CC9605, complete genome
40
6.6
19 ref|XM_463596.1| Oryza sativa (japonica cultivar-group), predic...
40
6.6
20 gb|AC141647.3| Mus musculus BAC clone RP23-64E12 from chromosome...
40
6.6
21 gb|AC127224.3| Mus musculus BAC clone RP24-498F21 from chromosom...
40
6.6
22 emb|BX640404.2| Chicken DNA sequence from clone WAG-36O23, compl...
40
6.6
23 gb|AC158963.3| Mus musculus chromosome 1, clone RP23-321A12, com...
40
6.6
24 gb|AC151605.2| Emiliania huxleyi clone JGIACCU-13A3, complete se...
40
6.6
25 emb|BX322574.10| Zebrafish DNA sequence from clone DKEY-35I15 in...
40
6.6
26 dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D...
40
6.6
27 emb|BX005394.8| Zebrafish DNA sequence from clone DKEY-3N15 in l...
40
6.6
28 dbj|AP003416.4| Oryza sativa (japonica cultivar-group) genomic D...
40
6.6
29 dbj|AP003796.2| Gallus gallus genomic DNA, chromosome 5, clone:2...
40
6.6
30 dbj|AP002817.1| Oryza sativa (japonica cultivar-group) genomic D...
40
6.6
31 gb|AC131084.13| Mus musculus chromosome 1, clone RP23-450D2, com...
40
6.6
32 ref|NM_013135.1| Rattus norvegicus RAS p21 protein activator 1 (...
40
6.6
33 emb|AL805912.5| Mouse DNA sequence from clone RP23-425K3 on chro...
40
6.6
34 gb|L13151.1|RATGAPX Rat GTPase-activating protein (GAP) gene, co...
40
6.6
>dbj|AP008213.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
sequence
Length = 29644043
Score = 97.6 bits (49), Expect = 3e-17
Identities = 70/77 (90%)
Strand = Plus / Plus
Query: 407 agtttggcattgcataataaacattcgtttgctgaagacagtgctggtgcttatcctttg 466
|||||||||||||||||||||||||| |||||||| || ||||||||||| || ||||||
Sbjct: 3242526 agtttggcattgcataataaacattcatttgctgaggatagtgctggtgcgtaccctttg 3242585
Query: 467 gtgcttagaatttctgt 483
|||||||| || |||||
Sbjct: 3242586 gtgcttaggatatctgt 3242602
Score = 75.8 bits (38), Expect = 1e-10
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 266 ctccacagcttcctccacccagatctcgtgctgcgcctcgaccgcggggagtgccgcg 323
|||||||||||||||||||| ||||||||||| |||||||| ||||||| |||||||
Sbjct: 3239572 ctccacagcttcctccacccggatctcgtgcttcgcctcgagcgcgggggttgccgcg 3239629
Score = 54.0 bits (27), Expect = 4e-04
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 128 tcctcctcctgccccgccgccgtctgcctcgtccctttcaggt 170
|||||||||| || | ||||||||||||||||||| |||||||
Sbjct: 3239346 tcctcctcctcccactccgccgtctgcctcgtccccttcaggt 3239388
Score = 48.1 bits (24), Expect = 0.027
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 350 agctacgcactcgtcccggcggacgagctctcgcgagcgctcgc 393
|||||||| ||||| ||||| |||||||||||||| | ||||||
Sbjct: 3239656 agctacgcgctcgtgccggccgacgagctctcgcgtgtgctcgc 3239699
>dbj|AP005454.4 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
clone:P0455F03
Length = 158201
Score = 97.6 bits (49), Expect = 3e-17
Identities = 70/77 (90%)
Strand = Plus / Plus
Query: 407 agtttggcattgcataataaacattcgtttgctgaagacagtgctggtgcttatcctttg 466
|||||||||||||||||||||||||| |||||||| || ||||||||||| || ||||||
Sbjct: 157516 agtttggcattgcataataaacattcatttgctgaggatagtgctggtgcgtaccctttg 157575
Query: 467 gtgcttagaatttctgt 483
|||||||| || |||||
Sbjct: 157576 gtgcttaggatatctgt 157592
Score = 75.8 bits (38), Expect = 1e-10
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 266 ctccacagcttcctccacccagatctcgtgctgcgcctcgaccgcggggagtgccgcg 323
|||||||||||||||||||| ||||||||||| |||||||| ||||||| |||||||
Sbjct: 154562 ctccacagcttcctccacccggatctcgtgcttcgcctcgagcgcgggggttgccgcg 154619
Score = 54.0 bits (27), Expect = 4e-04
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 128 tcctcctcctgccccgccgccgtctgcctcgtccctttcaggt 170
|||||||||| || | ||||||||||||||||||| |||||||
Sbjct: 154336 tcctcctcctcccactccgccgtctgcctcgtccccttcaggt 154378
Score = 48.1 bits (24), Expect = 0.027
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 350 agctacgcactcgtcccggcggacgagctctcgcgagcgctcgc 393
|||||||| ||||| ||||| |||||||||||||| | ||||||
Sbjct: 154646 agctacgcgctcgtgccggccgacgagctctcgcgtgtgctcgc 154689
>dbj|AP003847.3 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:OJ1714_H10
Length = 191580
Score = 97.6 bits (49), Expect = 3e-17
Identities = 70/77 (90%)
Strand = Plus / Plus
Query: 407 agtttggcattgcataataaacattcgtttgctgaagacagtgctggtgcttatcctttg 466
|||||||||||||||||||||||||| |||||||| || ||||||||||| || ||||||
Sbjct: 52219 agtttggcattgcataataaacattcatttgctgaggatagtgctggtgcgtaccctttg 52278
Query: 467 gtgcttagaatttctgt 483
|||||||| || |||||
Sbjct: 52279 gtgcttaggatatctgt 52295
Score = 75.8 bits (38), Expect = 1e-10
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 266 ctccacagcttcctccacccagatctcgtgctgcgcctcgaccgcggggagtgccgcg 323
|||||||||||||||||||| ||||||||||| |||||||| ||||||| |||||||
Sbjct: 49265 ctccacagcttcctccacccggatctcgtgcttcgcctcgagcgcgggggttgccgcg 49322
Score = 54.0 bits (27), Expect = 4e-04
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 128 tcctcctcctgccccgccgccgtctgcctcgtccctttcaggt 170
|||||||||| || | ||||||||||||||||||| |||||||
Sbjct: 49039 tcctcctcctcccactccgccgtctgcctcgtccccttcaggt 49081
Score = 48.1 bits (24), Expect = 0.027
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 350 agctacgcactcgtcccggcggacgagctctcgcgagcgctcgc 393
|||||||| ||||| ||||| |||||||||||||| | ||||||
Sbjct: 49349 agctacgcgctcgtgccggccgacgagctctcgcgtgtgctcgc 49392
>gb|AY485644.1 | Triticum monococcum phosphatidylserine decarboxylase, ZCCT2, ZCCT1, and
SNF2P genes, complete cds; nucellin pseudogene, complete
sequence; putative transposase, phosphatidylinositol
phosphatidylcholine transfer protein sec14 cytosolic-like
protein, and phytochrome P450-like protein genes, complete
cds; and unknown genes
Length = 438828
Score = 42.1 bits (21), Expect = 1.7
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 128 tcctcctcctgccccgccgccgtct 152
|||||||||| ||||||||||||||
Sbjct: 26253 tcctcctcctcccccgccgccgtct 26277
>gb|L13151.1 |RATGAPX Rat GTPase-activating protein (GAP) gene, complete cds
Length = 3296
Score = 40.1 bits (20), Expect = 6.6
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 188 gaggaggcggcagaggaggg 207
||||||||||||||||||||
Sbjct: 491 gaggaggcggcagaggaggg 472
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,463,667
Number of Sequences: 3902068
Number of extensions: 3463667
Number of successful extensions: 70987
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 70534
Number of HSP's gapped (non-prelim): 453
length of query: 490
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 468
effective length of database: 17,147,199,772
effective search space: 8024889493296
effective search space used: 8024889493296
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)