>gb|CP000146.1| Rhodobacter sphaeroides 2.4.1 plasmid C, complete sequence
          Length = 105284

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                          
Query: 173    gagcaggaaagaggaacaaggagatcgc 200
              |||||||||||| |||||||||||||||
Sbjct: 102978 gagcaggaaagacgaacaaggagatcgc 102951

>emb|BX640440.1| Bordetella bronchiseptica strain RB50, complete genome; segment 4/16
          Length = 349497

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 198    cgcgcgccggcgacgccatcgt 219
              ||||||||||||||||||||||
Sbjct: 286288 cgcgcgccggcgacgccatcgt 286267

>emb|BX640426.1| Bordetella parapertussis strain 12822, complete genome; segment 4/14
          Length = 348866

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 198   cgcgcgccggcgacgccatcgt 219
             ||||||||||||||||||||||
Sbjct: 51022 cgcgcgccggcgacgccatcgt 51001

>emb|AJ512416.1|CRA512416 Caulerpa racemosa var. laetevirens plastid partial tufA gene for
           Elongation Factor tu,  clone 1
          Length = 820

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 40/46 (86%)
 Strand = Plus / Plus

                                                         
Query: 265 tgccccaaacagaggagcatatttttctagctccacaggttggcgt 310
           ||||||||||| | || ||||||||  |||||| ||||||||||||
Sbjct: 50  tgccccaaacaaaagaacatattttattagctcaacaggttggcgt 95

>emb|AJ512415.1|CRA512415 Caulerpa racemosa var. laetevirens plastid partial tufA gene for
           Elongation Factor tu
          Length = 820

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 40/46 (86%)
 Strand = Plus / Plus

                                                         
Query: 265 tgccccaaacagaggagcatatttttctagctccacaggttggcgt 310
           ||||||||||| | || ||||||||  |||||| ||||||||||||
Sbjct: 50  tgccccaaacaaaagaacatattttattagctcaacaggttggcgt 95

>gb|AC160126.2| Mus musculus BAC clone RP23-295C1 from chromosome 13, complete sequence
          Length = 212570

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 80    ctcctcccccactccccactc 100
             |||||||||||||||||||||
Sbjct: 90145 ctcctcccccactccccactc 90125

>emb|AL606998.3|OSJN00125 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ000223_09,
             complete sequence
          Length = 120583

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 84    tcccccactccccactcactc 104
             |||||||||||||||||||||
Sbjct: 90937 tcccccactccccactcactc 90957

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 84       tcccccactccccactcactc 104
                |||||||||||||||||||||
Sbjct: 24268525 tcccccactccccactcactc 24268545

>emb|CT010439.6| Mouse DNA sequence from clone RP23-26E8 on chromosome 13, complete
              sequence
          Length = 231247

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 80     ctcctcccccactccccactc 100
              |||||||||||||||||||||
Sbjct: 144719 ctcctcccccactccccactc 144699

>gb|AC163217.9| Mus musculus chromosome 1, clone RP23-474A1, complete sequence
          Length = 184175

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 77     ctcctcctcccccactcccc 96
              ||||||||||||||||||||
Sbjct: 145553 ctcctcctcccccactcccc 145534

>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 303   gttggcgtgccatcgcttgttcat 326
             |||||||||||| |||||||||||
Sbjct: 54486 gttggcgtgccaccgcttgttcat 54509

>gb|AC117647.12| Mus musculus chromosome 16, clone RP23-244M7, complete sequence
          Length = 186115

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 88     ccactccccactcactctgc 107
              ||||||||||||||||||||
Sbjct: 170193 ccactccccactcactctgc 170212

>gb|AC122551.7| Mus musculus chromosome 16, clone RP24-480I8, complete sequence
          Length = 190760

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 88    ccactccccactcactctgc 107
             ||||||||||||||||||||
Sbjct: 60534 ccactccccactcactctgc 60553

>gb|AC118211.10| Mus musculus chromosome 8, clone RP24-223O5, complete sequence
          Length = 192713

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 77     ctcctcctcccccactcccc 96
              ||||||||||||||||||||
Sbjct: 178792 ctcctcctcccccactcccc 178811

>emb|AL139794.3|LMFLCHR4B Leishmania major Friedlin chromosome 4, right end
          Length = 247462

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 76    gctcctcctcccccactccc 95
             ||||||||||||||||||||
Sbjct: 74069 gctcctcctcccccactccc 74088

>ref|XM_761853.1| Giardia lamblia ATCC 50803 hypothetical protein (GLP_563_7521_7856)
           partial mRNA
          Length = 336

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 69  tcgagtggctcctcctcccc 88
           ||||||||||||||||||||
Sbjct: 240 tcgagtggctcctcctcccc 221

>ref|XM_761854.1| Giardia lamblia ATCC 50803 hypothetical protein (GLP_563_8260_7526)
           partial mRNA
          Length = 735

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 69  tcgagtggctcctcctcccc 88
           ||||||||||||||||||||
Sbjct: 501 tcgagtggctcctcctcccc 520

>gb|AC098740.3| Mus musculus BAC clone RP23-122H3 from 3, complete sequence
          Length = 219346

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 81     tcctcccccactccccactc 100
              ||||||||||||||||||||
Sbjct: 201222 tcctcccccactccccactc 201203

>emb|AL391993.20| Human DNA sequence from clone RP11-364I19 on chromosome 13 Contains
            the 5' end of the RFP2 gene for ret finger protein 2 and
            a CpG island, complete sequence
          Length = 37752

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 175  gcaggaaagaggaacaagga 194
            ||||||||||||||||||||
Sbjct: 7404 gcaggaaagaggaacaagga 7423

>emb|AL645566.15| Mouse DNA sequence from clone RP23-398M13 on chromosome 11 Contains a
             CpG island, complete sequence
          Length = 192808

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 76    gctcctcctcccccactccc 95
             ||||||||||||||||||||
Sbjct: 49620 gctcctcctcccccactccc 49639

>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 43      ctccgccgccgtcttcactg 62
               ||||||||||||||||||||
Sbjct: 2247083 ctccgccgccgtcttcactg 2247102

>gb|AF440619.1|AF440619 Homo sapiens 13q14 chronic lymphocytic leukemia suppressor locus
             section 1 of 2
          Length = 350000

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 175   gcaggaaagaggaacaagga 194
             ||||||||||||||||||||
Sbjct: 28820 gcaggaaagaggaacaagga 28839

>gb|AF334404.1|AF334404 Homo sapiens chromosome 13q14 BAC clone CITB-369L16, complete sequence
          Length = 154868

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 175   gcaggaaagaggaacaagga 194
             ||||||||||||||||||||
Sbjct: 28820 gcaggaaagaggaacaagga 28839

>gb|AC105186.14| Homo sapiens chromosome 8, clone CTD-2323A1, complete sequence
          Length = 114669

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 81     tcctcccccactccccactcactc 104
              ||||||||||||||||||| ||||
Sbjct: 107304 tcctcccccactccccactgactc 107281

>gb|AC021299.17| Homo sapiens chromosome 18, clone RP11-159K14, complete sequence
          Length = 168716

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 82     cctcccccactccccactca 101
              ||||||||||||||||||||
Sbjct: 119062 cctcccccactccccactca 119081

>gb|AC121952.4| Mus musculus BAC clone RP24-217M18 from chromosome 8, complete sequence
          Length = 111845

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 77    ctcctcctcccccactcccc 96
             ||||||||||||||||||||
Sbjct: 66542 ctcctcctcccccactcccc 66561

>gb|AC148872.2| Chlamydomonas reinhardtii clone cr-25P21, complete sequence
          Length = 45702

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 77   ctcctcctcccccactcccc 96
            ||||||||||||||||||||
Sbjct: 2220 ctcctcctcccccactcccc 2239

>emb|AL627425.15| Mouse DNA sequence from clone RP23-283L16 on chromosome 4, complete
            sequence
          Length = 226967

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 77   ctcctcctcccccactcccc 96
            ||||||||||||||||||||
Sbjct: 3453 ctcctcctcccccactcccc 3472

>emb|AL627206.20| Mouse DNA sequence from clone RP23-206H22 on chromosome 4, complete
              sequence
          Length = 158781

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 77     ctcctcctcccccactcccc 96
              ||||||||||||||||||||
Sbjct: 152132 ctcctcctcccccactcccc 152151


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,171,017
Number of Sequences: 3902068
Number of extensions: 3171017
Number of successful extensions: 65386
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 65225
Number of HSP's gapped (non-prelim): 161
length of query: 349
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 327
effective length of database: 17,147,199,772
effective search space: 5607134325444
effective search space used: 5607134325444
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)