ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl20e12 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_478067.1| Oryza sativa (japonica cultivar-group), mRNA Length = 408 Score = 89.7 bits (45), Expect = 7e-15 Identities = 149/184 (80%), Gaps = 6/184 (3%) Strand = Plus / Plus Query: 48 gagggtggcggtggtcggcggcggggtgagtgggctggcggcggcgcacgagctgctcgc 107 ||||||||| ||||| |||| ||||||||| |||||||| || ||||||||| || Sbjct: 205 gagggtggcagtggtgggcgccggggtgagcgggctggctgccgcgcacgag------gc 258 Query: 108 cgcgagcggcggaggcgacgtgcgtgtcaccctatacgagcaggaggagagcctcggagg 167 ||||| ||||| |||| |||||| || || || |||||| |||||| |||||||| || Sbjct: 259 ggcgaggggcggcggcggcgtgcgcgtgacgctgtacgagagggaggacagcctcggcgg 318 Query: 168 gcgtgcgaggacggtggccgtcgacgacggcgccggacgcctccagctcgacctcggctt 227 || || ||||||||||||||||||| || |||||| | | || | ||||||||||| || Sbjct: 319 gcacgccaggacggtggccgtcgacggcgacgccggccccgtcgacctcgacctcggatt 378 Query: 228 catg 231 |||| Sbjct: 379 catg 382
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 89.7 bits (45), Expect = 7e-15 Identities = 149/184 (80%), Gaps = 6/184 (3%) Strand = Plus / Plus Query: 48 gagggtggcggtggtcggcggcggggtgagtgggctggcggcggcgcacgagctgctcgc 107 ||||||||| ||||| |||| ||||||||| |||||||| || ||||||||| || Sbjct: 17044547 gagggtggcagtggtgggcgccggggtgagcgggctggctgccgcgcacgag------gc 17044600 Query: 108 cgcgagcggcggaggcgacgtgcgtgtcaccctatacgagcaggaggagagcctcggagg 167 ||||| ||||| |||| |||||| || || || |||||| |||||| |||||||| || Sbjct: 17044601 ggcgaggggcggcggcggcgtgcgcgtgacgctgtacgagagggaggacagcctcggcgg 17044660 Query: 168 gcgtgcgaggacggtggccgtcgacgacggcgccggacgcctccagctcgacctcggctt 227 || || ||||||||||||||||||| || |||||| | | || | ||||||||||| || Sbjct: 17044661 gcacgccaggacggtggccgtcgacggcgacgccggccccgtcgacctcgacctcggatt 17044720 Query: 228 catg 231 |||| Sbjct: 17044721 catg 17044724 Score = 46.1 bits (23), Expect = 0.089 Identities = 38/43 (88%) Strand = Plus / Plus Query: 61 gtcggcggcggggtgagtgggctggcggcggcgcacgagctgc 103 |||||||||||| || |||||||||||||||| |||||||| Sbjct: 672230 gtcggcggcgggatggcggggctggcggcggcgcgcgagctgc 672272 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 77 gtgggctggcggcggcgcacg 97 ||||||||||||||||||||| Sbjct: 17795707 gtgggctggcggcggcgcacg 17795687
>dbj|AP005181.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0016H06 Length = 148158 Score = 89.7 bits (45), Expect = 7e-15 Identities = 149/184 (80%), Gaps = 6/184 (3%) Strand = Plus / Plus Query: 48 gagggtggcggtggtcggcggcggggtgagtgggctggcggcggcgcacgagctgctcgc 107 ||||||||| ||||| |||| ||||||||| |||||||| || ||||||||| || Sbjct: 123958 gagggtggcagtggtgggcgccggggtgagcgggctggctgccgcgcacgag------gc 124011 Query: 108 cgcgagcggcggaggcgacgtgcgtgtcaccctatacgagcaggaggagagcctcggagg 167 ||||| ||||| |||| |||||| || || || |||||| |||||| |||||||| || Sbjct: 124012 ggcgaggggcggcggcggcgtgcgcgtgacgctgtacgagagggaggacagcctcggcgg 124071 Query: 168 gcgtgcgaggacggtggccgtcgacgacggcgccggacgcctccagctcgacctcggctt 227 || || ||||||||||||||||||| || |||||| | | || | ||||||||||| || Sbjct: 124072 gcacgccaggacggtggccgtcgacggcgacgccggccccgtcgacctcgacctcggatt 124131 Query: 228 catg 231 |||| Sbjct: 124132 catg 124135
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 79.8 bits (40), Expect = 6e-12 Identities = 55/60 (91%) Strand = Plus / Plus Query: 43 aggatgagggtggcggtggtcggcggcggggtgagtgggctggcggcggcgcacgagctg 102 |||||||||||||||||||| |||| ||| || || |||||||||||||||||||||||| Sbjct: 9528048 aggatgagggtggcggtggtgggcgccggagtaagcgggctggcggcggcgcacgagctg 9528107
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 79.8 bits (40), Expect = 6e-12 Identities = 55/60 (91%) Strand = Plus / Plus Query: 43 aggatgagggtggcggtggtcggcggcggggtgagtgggctggcggcggcgcacgagctg 102 |||||||||||||||||||| |||| ||| || || |||||||||||||||||||||||| Sbjct: 9527933 aggatgagggtggcggtggtgggcgccggagtaagcgggctggcggcggcgcacgagctg 9527992
>emb|AL731874.4|CNS08C8E Oryza sativa chromosome 12, . BAC OSJNBb0077C18 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 123766 Score = 79.8 bits (40), Expect = 6e-12 Identities = 55/60 (91%) Strand = Plus / Plus Query: 43 aggatgagggtggcggtggtcggcggcggggtgagtgggctggcggcggcgcacgagctg 102 |||||||||||||||||||| |||| ||| || || |||||||||||||||||||||||| Sbjct: 113272 aggatgagggtggcggtggtgggcgccggagtaagcgggctggcggcggcgcacgagctg 113331
>ref|NM_186198.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1431 Score = 46.1 bits (23), Expect = 0.089 Identities = 38/43 (88%) Strand = Plus / Plus Query: 61 gtcggcggcggggtgagtgggctggcggcggcgcacgagctgc 103 |||||||||||| || |||||||||||||||| |||||||| Sbjct: 58 gtcggcggcgggatggcggggctggcggcggcgcgcgagctgc 100
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 46.1 bits (23), Expect = 0.089 Identities = 23/23 (100%) Strand = Plus / Plus Query: 186 cgtcgacgacggcgccggacgcc 208 ||||||||||||||||||||||| Sbjct: 2835037 cgtcgacgacggcgccggacgcc 2835059
>dbj|AP003874.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1118_G09 Length = 115815 Score = 46.1 bits (23), Expect = 0.089 Identities = 38/43 (88%) Strand = Plus / Plus Query: 61 gtcggcggcggggtgagtgggctggcggcggcgcacgagctgc 103 |||||||||||| || |||||||||||||||| |||||||| Sbjct: 10761 gtcggcggcgggatggcggggctggcggcggcgcgcgagctgc 10803
>dbj|AP003746.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1123_C12 Length = 114309 Score = 46.1 bits (23), Expect = 0.089 Identities = 38/43 (88%) Strand = Plus / Plus Query: 61 gtcggcggcggggtgagtgggctggcggcggcgcacgagctgc 103 |||||||||||| || |||||||||||||||| |||||||| Sbjct: 106732 gtcggcggcgggatggcggggctggcggcggcgcgcgagctgc 106774
>ref|XM_470552.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1620 Score = 44.1 bits (22), Expect = 0.35 Identities = 40/46 (86%) Strand = Plus / Plus Query: 48 gagggtggcggtggtcggcggcggggtgagtgggctggcggcggcg 93 |||||||||| | ||||||||||| | || ||||||||||||||| Sbjct: 75 gagggtggcgatcatcggcggcgggatcagcgggctggcggcggcg 120
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 44.1 bits (22), Expect = 0.35 Identities = 40/46 (86%) Strand = Plus / Plus Query: 48 gagggtggcggtggtcggcggcggggtgagtgggctggcggcggcg 93 |||||||||| | ||||||||||| | || ||||||||||||||| Sbjct: 4293038 gagggtggcgatcatcggcggcgggatcagcgggctggcggcggcg 4293083
>emb|BX883051.1| Rattus norvegicus chromosome 20, major histocompatibility complex, assembled from 40 BACs, strain Brown Norway (BN/ssNHsd), RT1n haplotype; segment 10/11 Length = 348946 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Minus Query: 248 catatccccacatgatggaacg 269 |||||||||||||||||||||| Sbjct: 217876 catatccccacatgatggaacg 217855
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 44.1 bits (22), Expect = 0.35 Identities = 40/46 (86%) Strand = Plus / Plus Query: 48 gagggtggcggtggtcggcggcggggtgagtgggctggcggcggcg 93 |||||||||| | ||||||||||| | || ||||||||||||||| Sbjct: 4293153 gagggtggcgatcatcggcggcgggatcagcgggctggcggcggcg 4293198
>gb|AE005101.1| Halobacterium sp. NRC-1 section 132 of 170 of the complete genome Length = 12730 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Plus Query: 51 ggtggcggtggtcggcggcggggtga 76 |||||| ||||||||||||||||||| Sbjct: 7599 ggtggccgtggtcggcggcggggtga 7624
>gb|AC126223.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0076N15, complete sequence Length = 134307 Score = 44.1 bits (22), Expect = 0.35 Identities = 40/46 (86%) Strand = Plus / Plus Query: 48 gagggtggcggtggtcggcggcggggtgagtgggctggcggcggcg 93 |||||||||| | ||||||||||| | || ||||||||||||||| Sbjct: 121653 gagggtggcgatcatcggcggcgggatcagcgggctggcggcggcg 121698
>ref|NM_193809.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1317 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 79 gggctggcggcggcgcacgagctgc 103 |||||||||||||||| |||||||| Sbjct: 7 gggctggcggcggcgcgcgagctgc 31
>gb|AC119670.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0007H22, complete sequence Length = 160938 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 51 ggtggcggtggtcggcggcggggtg 75 |||||||||| |||||||||||||| Sbjct: 31021 ggtggcggtgctcggcggcggggtg 30997
>ref|XM_425375.1| PREDICTED: Gallus gallus similar to KIAA1917 protein (LOC427804), mRNA Length = 5085 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 34 cggcagggcaggatgagggtg 54 ||||||||||||||||||||| Sbjct: 2342 cggcagggcaggatgagggtg 2322
>gb|L19443.1| Human adenovirus F, complete genome Length = 34214 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 186 cgtcgacgacggcgccggacg 206 ||||||||||||||||||||| Sbjct: 8950 cgtcgacgacggcgccggacg 8970
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 42.1 bits (21), Expect = 1.4 Identities = 30/33 (90%) Strand = Plus / Plus Query: 57 ggtggtcggcggcggggtgagtgggctggcggc 89 |||||| ||||||||| |||| ||||||||||| Sbjct: 1569222 ggtggtgggcggcgggctgagcgggctggcggc 1569254
>gb|AE008862.1| Salmonella typhimurium LT2, section 166 of 220 of the complete genome Length = 22307 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 77 gtgggctggcggcggcgcacg 97 ||||||||||||||||||||| Sbjct: 16316 gtgggctggcggcggcgcacg 16296
>ref|NM_001016911.2| Xenopus tropicalis mahogunin, ring finger 1 (mgrn1), mRNA Length = 2231 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 34 cggcagggcaggatgagggtg 54 ||||||||||||||||||||| Sbjct: 1000 cggcagggcaggatgagggtg 980
>gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome Length = 3665893 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 51 ggtggcggtggtcggcggcgg 71 ||||||||||||||||||||| Sbjct: 138080 ggtggcggtggtcggcggcgg 138100
>gb|AF427791.1| Hordeum vulgare Mla locus, complete sequence Length = 261265 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 82 ctggcggcggcgcacgagctgctcg 106 ||||||||||||| ||||||||||| Sbjct: 157741 ctggcggcggcgctcgagctgctcg 157717
>dbj|AP003281.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0560B06 Length = 161720 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 79 gggctggcggcggcgcacgagctgc 103 |||||||||||||||| |||||||| Sbjct: 83594 gggctggcggcggcgcgcgagctgc 83618
>gb|AF411223.1| Oryza sativa phospholipase D lambda (PLDlambda) gene, complete cds Length = 3998 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 109 gcgagcggcggaggcgacgtg 129 ||||||||||||||||||||| Sbjct: 3721 gcgagcggcggaggcgacgtg 3741
>gb|AC011806.1|AC011806 Genomic Sequence For Oryza sativa Clone 10P20, Lemont Strain, Complete Sequence, complete sequence Length = 105198 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 79 gggctggcggcggcgcacgagctgc 103 |||||||||||||||| |||||||| Sbjct: 21313 gggctggcggcggcgcgcgagctgc 21337
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 189 cgacgacggcgccggacgcct 209 ||||||||||||||||||||| Sbjct: 734276 cgacgacggcgccggacgcct 734296
>gb|AC153860.4| Mus musculus 6 BAC RP23-170C11 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 213719 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 279 gctcggggtggagatggagag 299 ||||||||||||||||||||| Sbjct: 16687 gctcggggtggagatggagag 16667
>gb|AC153923.4| Mus musculus 6 BAC RP23-82I13 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 248275 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 279 gctcggggtggagatggagag 299 ||||||||||||||||||||| Sbjct: 88381 gctcggggtggagatggagag 88401
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 51 ggtggcggtggtcggcggcggggtg 75 |||||||||| |||||||||||||| Sbjct: 6855830 ggtggcggtgctcggcggcggggtg 6855854
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 109 gcgagcggcggaggcgacgtg 129 ||||||||||||||||||||| Sbjct: 15168483 gcgagcggcggaggcgacgtg 15168463
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 79 gggctggcggcggcgcacgagctgc 103 |||||||||||||||| |||||||| Sbjct: 15067542 gggctggcggcggcgcgcgagctgc 15067566 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 55 gcggtggtcggcggcggggtg 75 ||||||||||||||||||||| Sbjct: 12376800 gcggtggtcggcggcggggtg 12376780
>dbj|AP008247.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0784G04 Length = 157458 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 79 gggctggcggcggcgcacgagctgc 103 |||||||||||||||| |||||||| Sbjct: 97120 gggctggcggcggcgcgcgagctgc 97144
>dbj|AP006530.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1329D01 Length = 141938 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 79 gggctggcggcggcgcacgagctgc 103 |||||||||||||||| |||||||| Sbjct: 93789 gggctggcggcggcgcgcgagctgc 93813
>dbj|AP004348.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0683C09 Length = 185139 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 77 gtgggctggcggcggcgcacg 97 ||||||||||||||||||||| Sbjct: 22699 gtgggctggcggcggcgcacg 22679
>dbj|AP003236.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0043B10 Length = 167399 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 79 gggctggcggcggcgcacgagctgc 103 |||||||||||||||| |||||||| Sbjct: 39508 gggctggcggcggcgcgcgagctgc 39532
>dbj|AP003211.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0011P19 Length = 150811 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 55 gcggtggtcggcggcggggtg 75 ||||||||||||||||||||| Sbjct: 62445 gcggtggtcggcggcggggtg 62425
>dbj|AP005579.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1740_D06 Length = 187410 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 109 gcgagcggcggaggcgacgtg 129 ||||||||||||||||||||| Sbjct: 62459 gcgagcggcggaggcgacgtg 62439
>dbj|AP003849.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1753_E03 Length = 126734 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 77 gtgggctggcggcggcgcacg 97 ||||||||||||||||||||| Sbjct: 100460 gtgggctggcggcggcgcacg 100440
>dbj|AK120459.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013106C05, full insert sequence Length = 2751 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 109 gcgagcggcggaggcgacgtg 129 ||||||||||||||||||||| Sbjct: 2292 gcgagcggcggaggcgacgtg 2312
>dbj|AK100975.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023143J04, full insert sequence Length = 2772 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 109 gcgagcggcggaggcgacgtg 129 ||||||||||||||||||||| Sbjct: 2290 gcgagcggcggaggcgacgtg 2310
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence Length = 2094509 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 52 gtggcggtggtcggcggcggg 72 ||||||||||||||||||||| Sbjct: 503128 gtggcggtggtcggcggcggg 503148
>emb|CR848375.2| Xenopus tropicalis finished cDNA, clone TNeu042a09 Length = 2231 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 34 cggcagggcaggatgagggtg 54 ||||||||||||||||||||| Sbjct: 1000 cggcagggcaggatgagggtg 980
>gb|AE017220.1| Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67, complete genome Length = 4755700 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 77 gtgggctggcggcggcgcacg 97 ||||||||||||||||||||| Sbjct: 3646162 gtgggctggcggcggcgcacg 3646142
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 51 ggtggcggtggtcggcggcgg 71 ||||||||||||||||||||| Sbjct: 3295667 ggtggcggtggtcggcggcgg 3295687
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 51 ggtggcggtggtcggcggcggggtg 75 |||||||||| |||||||||||||| Sbjct: 6922297 ggtggcggtgctcggcggcggggtg 6922321 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 42 caggatgagggtggcggtggtcggcggc 69 ||||||| |||||||||||| ||||||| Sbjct: 14922762 caggatgggggtggcggtgggcggcggc 14922789
>gb|AF336802.1| Yersinia pseudotuberculosis peripheral membrane protein BtuD gene, partial cds; alpha-helical peptide and polymyxin resistance operon, complete sequence; and putative lipoprotein NLPC-like precursor gene, partial cds Length = 8577 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 tgagtgggctggcggcggcg 93 |||||||||||||||||||| Sbjct: 2375 tgagtgggctggcggcggcg 2394
>gb|AE010328.1| Methanopyrus kandleri AV19 section 27 of 157 of the complete genome Length = 11051 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 81 gctggcggcggcgcacgagctgct 104 ||||||||||||| |||||||||| Sbjct: 8403 gctggcggcggcgaacgagctgct 8380
>gb|AY596296.1| Haloarcula marismortui ATCC 43049 plasmid pNG700, complete sequence Length = 410554 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 176 ggacggtggccgtcgacgac 195 |||||||||||||||||||| Sbjct: 85452 ggacggtggccgtcgacgac 85471
>gb|AE017135.1| Yersinia pestis biovar Medievalis str. 91001 section 9 of 16 of the complete genome Length = 291326 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 tgagtgggctggcggcggcg 93 |||||||||||||||||||| Sbjct: 134824 tgagtgggctggcggcggcg 134805
>gb|AC137752.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0041C22, complete sequence Length = 161172 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 42 caggatgagggtggcggtggtcggcggc 69 ||||||| |||||||||||| ||||||| Sbjct: 65861 caggatgggggtggcggtgggcggcggc 65888
>gb|AC151537.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0087D01, complete sequence Length = 83225 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 179 cggtggccgtcgacgacggc 198 |||||||||||||||||||| Sbjct: 64526 cggtggccgtcgacgacggc 64507
>gb|AC099020.2| Drosophila melanogaster clone BACR30H01, complete sequence Length = 155557 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 334 aaaggcggcggtggaggatg 353 |||||||||||||||||||| Sbjct: 124220 aaaggcggcggtggaggatg 124201
>gb|AC010838.12| Drosophila melanogaster clone BACR13D24, complete sequence Length = 156843 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 attgaaaggcggcggtggag 349 |||||||||||||||||||| Sbjct: 85767 attgaaaggcggcggtggag 85748
>gb|AE009952.1| Yersinia pestis KIM, complete genome Length = 4600755 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 tgagtgggctggcggcggcg 93 |||||||||||||||||||| Sbjct: 2112194 tgagtgggctggcggcggcg 2112213
>gb|AC158136.11| Mus musculus chromosome 7, clone RP23-58I15, complete sequence Length = 250563 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 345 tggaggatgtgagtggggaaatga 368 |||||| ||||||||||||||||| Sbjct: 38833 tggaggctgtgagtggggaaatga 38856
>ref|XM_539776.2| PREDICTED: Canis familiaris similar to dachsous 2 isoform 1 (LOC482659), mRNA Length = 6969 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 ggcggcggcgcacgagctgc 103 |||||||||||||||||||| Sbjct: 747 ggcggcggcgcacgagctgc 766
>gb|AC126253.3| Mus musculus BAC clone RP24-119M15 from chromosome 14, complete sequence Length = 172035 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 269 ggttagaagggctcggggtggaga 292 |||| ||||||||||||||||||| Sbjct: 94693 ggttggaagggctcggggtggaga 94716
>gb|AC096625.25| Mus musculus strain C57BL/6J clone rp23-388i7 map 1, complete sequence Length = 191415 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 36 gcagggcaggatgagggtgg 55 |||||||||||||||||||| Sbjct: 159316 gcagggcaggatgagggtgg 159335
>emb|AL138960.16| Human DNA sequence from clone RP11-269C23 on chromosome 13, complete sequence Length = 144836 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 349 ggatgtgagtggggaaatga 368 |||||||||||||||||||| Sbjct: 10997 ggatgtgagtggggaaatga 11016
>gb|BT009021.1| Triticum aestivum clone wdk3c.pk007.j3:fis, full insert mRNA sequence Length = 1349 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 48 gagggtggcggtggtcggcggcgg 71 |||||||| ||||||||||||||| Sbjct: 79 gagggtggtggtggtcggcggcgg 102
>emb|BX936398.1| Yersinia pseudotuberculosis IP32953 genome, complete sequence Length = 4744671 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 tgagtgggctggcggcggcg 93 |||||||||||||||||||| Sbjct: 2752070 tgagtgggctggcggcggcg 2752051
>emb|BX572593.1| Rhodopseudomonas palustris CGA009 complete genome; segment 1/16 Length = 349315 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 44 ggatgagggtggcggtggtcggcg 67 ||||| |||||||||||||||||| Sbjct: 153161 ggatgcgggtggcggtggtcggcg 153138
>emb|AJ414152.1| Yersinia pestis strain CO92 complete genome; segment 12/20 Length = 313050 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 tgagtgggctggcggcggcg 93 |||||||||||||||||||| Sbjct: 122064 tgagtgggctggcggcggcg 122045
>gb|AC159035.2| Pan troglodytes BAC clone CH251-297P8 from chromosome unknown, complete sequence Length = 207834 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 149 aggaggagagcctcggaggg 168 |||||||||||||||||||| Sbjct: 164981 aggaggagagcctcggaggg 165000
>gb|DQ397600.1| Cenarchaeum symbiosum clone C07B08, complete sequence Length = 41295 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 tggccgtcgacgacggcgcc 201 |||||||||||||||||||| Sbjct: 38145 tggccgtcgacgacggcgcc 38164
>gb|DQ397551.1| Cenarchaeum symbiosum clone C05D09, complete sequence Length = 43893 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 tggccgtcgacgacggcgcc 201 |||||||||||||||||||| Sbjct: 15939 tggccgtcgacgacggcgcc 15958
>dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, complete genome Length = 4171146 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 gtggcggtggtcggcggcgg 71 |||||||||||||||||||| Sbjct: 1831594 gtggcggtggtcggcggcgg 1831575
>gb|AE005927.1| Caulobacter crescentus CB15 section 253 of 359 of the complete genome Length = 14874 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 ggcggtggtcggcggcgggg 73 |||||||||||||||||||| Sbjct: 12435 ggcggtggtcggcggcgggg 12416
>ref|NM_136144.2| Drosophila melanogaster CG13079-RA (CG13079), mRNA Length = 3123 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 334 aaaggcggcggtggaggatg 353 |||||||||||||||||||| Sbjct: 672 aaaggcggcggtggaggatg 691
>gb|AC099017.1| Drosophila melanogaster, chromosome 2L, region 37D-37E, BAC clone BACR27M12, complete sequence Length = 157766 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 334 aaaggcggcggtggaggatg 353 |||||||||||||||||||| Sbjct: 146739 aaaggcggcggtggaggatg 146758
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 53 tggcggtggtcggcggcggg 72 |||||||||||||||||||| Sbjct: 514735 tggcggtggtcggcggcggg 514716
>emb|BX119984.15| Zebrafish DNA sequence from clone DKEY-257N17 in linkage group 1, complete sequence Length = 163978 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 337 ggcggcggtggaggatgtga 356 |||||||||||||||||||| Sbjct: 141435 ggcggcggtggaggatgtga 141416
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 ggcggtggtcggcggcgggg 73 |||||||||||||||||||| Sbjct: 187136 ggcggtggtcggcggcgggg 187155
>gb|AE016819.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VI, complete sequence Length = 1813164 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 ggcggcggcgcacgagctgc 103 |||||||||||||||||||| Sbjct: 372564 ggcggcggcgcacgagctgc 372583
>gb|AE006470.1| Chlorobium tepidum TLS, complete genome Length = 2154946 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 gcggcggcgcacgagctgct 104 |||||||||||||||||||| Sbjct: 48180 gcggcggcgcacgagctgct 48199
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 48 gagggtggcggtggtcggcggcgg 71 |||||||| ||||||||||||||| Sbjct: 2776546 gagggtggtggtggtcggcggcgg 2776569
>dbj|AP005412.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0050G13 Length = 150685 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 48 gagggtggcggtggtcggcggcgg 71 |||||||| ||||||||||||||| Sbjct: 44774 gagggtggtggtggtcggcggcgg 44797
>dbj|AK120153.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013029P18, full insert sequence Length = 2277 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 48 gagggtggcggtggtcggcggcgg 71 |||||||| ||||||||||||||| Sbjct: 100 gagggtggtggtggtcggcggcgg 123
>emb|AJ002638.1|SAAJ2638 Streptomyces antibioticus oleP1, oleG1, oleG2, oleM1 and oleY genes Length = 6093 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 97 gagctgctcgccgcgagcggcgga 120 |||| ||||||||||||||||||| Sbjct: 3946 gagcggctcgccgcgagcggcgga 3969
>ref|NM_210868.1| Eremothecium gossypii AFL034Wp (AFL034W), mRNA Length = 1425 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 ggcggcggcgcacgagctgc 103 |||||||||||||||||||| Sbjct: 738 ggcggcggcgcacgagctgc 757
>dbj|AK072350.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023054H01, full insert sequence Length = 3770 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 30 acatcggcagggcaggatgagggt 53 |||||||||||||||| ||||||| Sbjct: 2925 acatcggcagggcaggctgagggt 2902
>gb|AE003663.4| Drosophila melanogaster chromosome 2L, section 72 of 83 of the complete sequence Length = 290667 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 334 aaaggcggcggtggaggatg 353 |||||||||||||||||||| Sbjct: 118358 aaaggcggcggtggaggatg 118377
>gb|AC005128.1|AC005128 Drosophila melanogaster, chromosome 2L, region 37F1-37F6, P1 clone DS08491, complete sequence Length = 60040 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 334 aaaggcggcggtggaggatg 353 |||||||||||||||||||| Sbjct: 29533 aaaggcggcggtggaggatg 29514
>gb|AE003846.5| Drosophila melanogaster chromosome 4, section 5 of 5 of the complete sequence Length = 356494 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 attgaaaggcggcggtggag 349 |||||||||||||||||||| Sbjct: 111232 attgaaaggcggcggtggag 111213
>emb|Y14336.1|SRSENRS Streptomyces reticuli senS, senR and hbpS genes Length = 2760 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 35 ggcagggcaggatgagggtggcggtggt 62 |||||| |||| |||||||||||||||| Sbjct: 1785 ggcaggtcagggtgagggtggcggtggt 1758
>gb|AF010496.1|AF010496 Rhodobacter capsulatus strain SB1003, partial genome Length = 189370 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 81 gctggcggcggcgcacgagctgct 104 |||||||||||||| ||||||||| Sbjct: 149169 gctggcggcggcgcgcgagctgct 149192
>emb|AL645791.14| Mouse DNA sequence from clone RP23-465A12 on chromosome 11, complete sequence Length = 200883 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 273 agaagggctcggggtggaga 292 |||||||||||||||||||| Sbjct: 12667 agaagggctcggggtggaga 12686
>gb|AC164161.2| Mus musculus BAC clone RP23-274G21 from chromosome 9, complete sequence Length = 198367 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 23 accaagcacatcggcagggcagga 46 ||||||||||| |||||||||||| Sbjct: 163733 accaagcacatgggcagggcagga 163710 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,483,822 Number of Sequences: 3902068 Number of extensions: 3483822 Number of successful extensions: 85729 Number of sequences better than 10.0: 92 Number of HSP's better than 10.0 without gapping: 95 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 83558 Number of HSP's gapped (non-prelim): 2171 length of query: 408 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 386 effective length of database: 17,147,199,772 effective search space: 6618819111992 effective search space used: 6618819111992 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
