Clone Name | bastl20e10 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_469360.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3534 Score = 280 bits (141), Expect = 3e-72 Identities = 261/301 (86%) Strand = Plus / Plus Query: 6 cttctgatggacctaagaaaagtgagaagaagcaaaagaagaaggctgcggatgatgaaa 65 |||| ||||||||||||||||| ||||||||||||| |||||| |||| ||| ||||| | Sbjct: 152 cttcagatggacctaagaaaagcgagaagaagcaaaggaagaaagctgtggaggatgaga 211 Query: 66 accccgaagatttcattgatcctgagacccctagtgggcagaagaaatcgcttgcacctc 125 | || || |||||||||||||| || || ||| |||||||||||||| |||||| ||| Sbjct: 212 atcctgaggatttcattgatccagacactcctcatgggcagaagaaatttcttgcatctc 271 Query: 126 aaatggctaagcagtatagcccaagtacagtggaaaaatcgtggtatgcctggtgggagt 185 ||||||| |||||||||||||||| | | || || ||||| |||||| |||||||||| | Sbjct: 272 aaatggccaagcagtatagcccaactgctgttgagaaatcatggtattcctggtgggaat 331 Query: 186 cagcaggatatttcggggcagaccctgcaagctcaaaaccaccctttgttatagttctac 245 || |||||||||| |||||||| ||||||||||||| ||||| |||||||||||| | | Sbjct: 332 catcaggatattttggggcagatgctgcaagctcaaagccaccatttgttatagttttgc 391 Query: 246 cacctccgaatgtgactggagcgcttcatattggtcatgcacttacagtggctatagagg 305 ||||||| ||||| ||||||||||||||||| || ||||||||||| ||||||||||||| Sbjct: 392 cacctccaaatgtcactggagcgcttcatataggccatgcacttacggtggctatagagg 451 Query: 306 a 306 | Sbjct: 452 a 452
>dbj|AK121157.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023079F18, full insert sequence Length = 3587 Score = 280 bits (141), Expect = 3e-72 Identities = 261/301 (86%) Strand = Plus / Plus Query: 6 cttctgatggacctaagaaaagtgagaagaagcaaaagaagaaggctgcggatgatgaaa 65 |||| ||||||||||||||||| ||||||||||||| |||||| |||| ||| ||||| | Sbjct: 365 cttcagatggacctaagaaaagcgagaagaagcaaaggaagaaagctgtggaggatgaga 424 Query: 66 accccgaagatttcattgatcctgagacccctagtgggcagaagaaatcgcttgcacctc 125 | || || |||||||||||||| || || ||| |||||||||||||| |||||| ||| Sbjct: 425 atcctgaggatttcattgatccagacactcctcatgggcagaagaaatttcttgcatctc 484 Query: 126 aaatggctaagcagtatagcccaagtacagtggaaaaatcgtggtatgcctggtgggagt 185 ||||||| |||||||||||||||| | | || || ||||| |||||| |||||||||| | Sbjct: 485 aaatggccaagcagtatagcccaactgctgttgagaaatcatggtattcctggtgggaat 544 Query: 186 cagcaggatatttcggggcagaccctgcaagctcaaaaccaccctttgttatagttctac 245 || |||||||||| |||||||| ||||||||||||| ||||| |||||||||||| | | Sbjct: 545 catcaggatattttggggcagatgctgcaagctcaaagccaccatttgttatagttttgc 604 Query: 246 cacctccgaatgtgactggagcgcttcatattggtcatgcacttacagtggctatagagg 305 ||||||| ||||| ||||||||||||||||| || ||||||||||| ||||||||||||| Sbjct: 605 cacctccaaatgtcactggagcgcttcatataggccatgcacttacggtggctatagagg 664 Query: 306 a 306 | Sbjct: 665 a 665
>dbj|AK100513.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023099P08, full insert sequence Length = 3639 Score = 218 bits (110), Expect = 9e-54 Identities = 236/278 (84%) Strand = Plus / Plus Query: 50 gctgcggatgatgaaaaccccgaagatttcattgatcctgagacccctagtgggcagaag 109 |||| ||| |||||||| || |||||||| ||||||| || || |||| |||||||||| Sbjct: 655 gctgtggaggatgaaaatcctgaagattttattgatcaagacactcctaatgggcagaag 714 Query: 110 aaatcgcttgcacctcaaatggctaagcagtatagcccaagtacagtggaaaaatcgtgg 169 ||| |||||||||||||||||| || |||||| ||||||| || || || ||||| ||| Sbjct: 715 aaactgcttgcacctcaaatggccaatcagtattgcccaagcacggttgagaaatcatgg 774 Query: 170 tatgcctggtgggagtcagcaggatatttcggggcagaccctgcaagctcaaaaccaccc 229 |||||||||||||| ||| |||||||||| ||||||| |||||||| |||| ||||| Sbjct: 775 tatgcctggtgggaatcatcaggatattttagggcagattctgcaagcacaaagccacca 834 Query: 230 tttgttatagttctaccacctccgaatgtgactggagcgcttcatattggtcatgcactt 289 |||||||||||| | |||||||| |||||||||||||| ||||| || || ||||| ||| Sbjct: 835 tttgttatagttatgccacctccaaatgtgactggagctcttcacataggccatgctctt 894 Query: 290 acagtggctatagaggacgctatggtacggtggaggag 327 ||||||||||||||||| || ||| |||| ||| |||| Sbjct: 895 acagtggctatagaggatgcgatgatacgatggcggag 932
>dbj|AK066973.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089D01, full insert sequence Length = 4411 Score = 149 bits (75), Expect = 7e-33 Identities = 174/207 (84%) Strand = Plus / Plus Query: 6 cttctgatggacctaagaaaagtgagaagaagcaaaagaagaaggctgcggatgatgaaa 65 |||| ||||| ||||| ||||||||||||||||||| |||||| |||| || ||||| | Sbjct: 1259 cttcagatggtcctaaaaaaagtgagaagaagcaaaggaagaaagctgttgaggatgaga 1318 Query: 66 accccgaagatttcattgatcctgagacccctagtgggcagaagaaatcgcttgcacctc 125 | || || |||||||||||||| || || ||| |||||||||||||| |||||| ||| Sbjct: 1319 atcctgaggatttcattgatccagacactcctcatgggcagaagaaatttcttgcatctc 1378 Query: 126 aaatggctaagcagtatagcccaagtacagtggaaaaatcgtggtatgcctggtgggagt 185 ||||||| ||||||||||||||| | | || || ||||| ||||||||||||||||| | Sbjct: 1379 aaatggccaagcagtatagcccagctgctgttgagaaatcatggtatgcctggtgggaat 1438 Query: 186 cagcaggatatttcggggcagaccctg 212 | |||||||||| |||||||| |||| Sbjct: 1439 cgtcaggatattttggggcagatcctg 1465 Score = 75.8 bits (38), Expect = 8e-11 Identities = 56/62 (90%) Strand = Plus / Plus Query: 245 ccacctccgaatgtgactggagcgcttcatattggtcatgcacttacagtggctatagag 304 |||||||| ||||| || ||||| |||||||| || |||||||||||||||||||||||| Sbjct: 1506 ccacctccaaatgtcaccggagcacttcatataggccatgcacttacagtggctatagag 1565 Query: 305 ga 306 || Sbjct: 1566 ga 1567
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 135 bits (68), Expect = 1e-28 Identities = 125/144 (86%) Strand = Plus / Plus Query: 6 cttctgatggacctaagaaaagtgagaagaagcaaaagaagaaggctgcggatgatgaaa 65 |||| ||||||||||||||||| ||||||||||||| |||||| |||| ||| ||||| | Sbjct: 27536320 cttcagatggacctaagaaaagcgagaagaagcaaaggaagaaagctgtggaggatgaga 27536379 Query: 66 accccgaagatttcattgatcctgagacccctagtgggcagaagaaatcgcttgcacctc 125 | || || |||||||||||||| || || ||| |||||||||||||| |||||| ||| Sbjct: 27536380 atcctgaggatttcattgatccagacactcctcatgggcagaagaaatttcttgcatctc 27536439 Query: 126 aaatggctaagcagtatagcccaa 149 ||||||| |||||||||||||||| Sbjct: 27536440 aaatggccaagcagtatagcccaa 27536463 Score = 117 bits (59), Expect = 2e-23 Identities = 122/143 (85%) Strand = Plus / Plus Query: 6 cttctgatggacctaagaaaagtgagaagaagcaaaagaagaaggctgcggatgatgaaa 65 |||| ||||| ||||| ||||||||||||||||||| |||||| |||| || ||||| | Sbjct: 645985 cttcagatggtcctaaaaaaagtgagaagaagcaaaggaagaaagctgttgaggatgaga 646044 Query: 66 accccgaagatttcattgatcctgagacccctagtgggcagaagaaatcgcttgcacctc 125 | || || |||||||||||||| || || ||| |||||||||||||| |||||| ||| Sbjct: 646045 atcctgaggatttcattgatccagacactcctcatgggcagaagaaatttcttgcatctc 646104 Query: 126 aaatggctaagcagtatagccca 148 ||||||| ||||||||||||||| Sbjct: 646105 aaatggccaagcagtatagccca 646127 Score = 83.8 bits (42), Expect = 3e-13 Identities = 66/74 (89%) Strand = Plus / Plus Query: 167 tggtatgcctggtgggagtcagcaggatatttcggggcagaccctgcaagctcaaaacca 226 |||||| |||||||||| ||| |||||||||| |||||||| ||||||||||||| ||| Sbjct: 27536579 tggtattcctggtgggaatcatcaggatattttggggcagatgctgcaagctcaaagcca 27536638 Query: 227 ccctttgttatagt 240 || ||||||||||| Sbjct: 27536639 ccatttgttatagt 27536652 Score = 83.8 bits (42), Expect = 3e-13 Identities = 99/118 (83%) Strand = Plus / Minus Query: 50 gctgcggatgatgaaaaccccgaagatttcattgatcctgagacccctagtgggcagaag 109 |||| ||| |||||||| || |||||||| ||||||| || || |||| |||||||||| Sbjct: 12403432 gctgtggaggatgaaaatcctgaagattttattgatcaagacactcctaatgggcagaag 12403373 Query: 110 aaatcgcttgcacctcaaatggctaagcagtatagcccaagtacagtggaaaaatcgt 167 ||| |||||||||||||||||| || |||||| ||||||| || || || ||||||| Sbjct: 12403372 aaactgcttgcacctcaaatggccaatcagtattgcccaagcacggttgagaaatcgt 12403315 Score = 81.8 bits (41), Expect = 1e-12 Identities = 56/61 (91%) Strand = Plus / Plus Query: 245 ccacctccgaatgtgactggagcgcttcatattggtcatgcacttacagtggctatagag 304 |||||||| ||||| ||||||||||||||||| || ||||||||||| |||||||||||| Sbjct: 27536779 ccacctccaaatgtcactggagcgcttcatataggccatgcacttacggtggctatagag 27536838 Query: 305 g 305 | Sbjct: 27536839 g 27536839 Score = 75.8 bits (38), Expect = 8e-11 Identities = 65/74 (87%) Strand = Plus / Minus Query: 167 tggtatgcctggtgggagtcagcaggatatttcggggcagaccctgcaagctcaaaacca 226 ||||||||||||||||| ||| |||||||||| ||||||| |||||||| |||| ||| Sbjct: 12403216 tggtatgcctggtgggaatcatcaggatattttagggcagattctgcaagcacaaagcca 12403157 Query: 227 ccctttgttatagt 240 || ||||||||||| Sbjct: 12403156 ccatttgttatagt 12403143 Score = 73.8 bits (37), Expect = 3e-10 Identities = 55/61 (90%) Strand = Plus / Minus Query: 245 ccacctccgaatgtgactggagcgcttcatattggtcatgcacttacagtggctatagag 304 |||||||| |||||||||||||| ||||| || || ||||| |||||||||||||||||| Sbjct: 12402988 ccacctccaaatgtgactggagctcttcacataggccatgctcttacagtggctatagag 12402929 Query: 305 g 305 | Sbjct: 12402928 g 12402928 Score = 73.8 bits (37), Expect = 3e-10 Identities = 55/61 (90%) Strand = Plus / Plus Query: 245 ccacctccgaatgtgactggagcgcttcatattggtcatgcacttacagtggctatagag 304 |||||||| ||||| || ||||| |||||||| || |||||||||||||||||||||||| Sbjct: 646442 ccacctccaaatgtcaccggagcacttcatataggccatgcacttacagtggctatagag 646501 Query: 305 g 305 | Sbjct: 646502 g 646502 Score = 52.0 bits (26), Expect = 0.001 Identities = 41/46 (89%) Strand = Plus / Plus Query: 167 tggtatgcctggtgggagtcagcaggatatttcggggcagaccctg 212 ||||||||||||||||| || |||||||||| |||||||| |||| Sbjct: 646242 tggtatgcctggtgggaatcgtcaggatattttggggcagatcctg 646287 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 26 agtgagaagaagcaaaagaagaag 49 |||||||||||| ||||||||||| Sbjct: 14385631 agtgagaagaagaaaaagaagaag 14385654
>gb|AC137998.2| Oryza sativa chromosome 3 BAC OSJNBa0010B01 genomic sequence, complete sequence Length = 27470 Score = 135 bits (68), Expect = 1e-28 Identities = 125/144 (86%) Strand = Plus / Minus Query: 6 cttctgatggacctaagaaaagtgagaagaagcaaaagaagaaggctgcggatgatgaaa 65 |||| ||||||||||||||||| ||||||||||||| |||||| |||| ||| ||||| | Sbjct: 26454 cttcagatggacctaagaaaagcgagaagaagcaaaggaagaaagctgtggaggatgaga 26395 Query: 66 accccgaagatttcattgatcctgagacccctagtgggcagaagaaatcgcttgcacctc 125 | || || |||||||||||||| || || ||| |||||||||||||| |||||| ||| Sbjct: 26394 atcctgaggatttcattgatccagacactcctcatgggcagaagaaatttcttgcatctc 26335 Query: 126 aaatggctaagcagtatagcccaa 149 ||||||| |||||||||||||||| Sbjct: 26334 aaatggccaagcagtatagcccaa 26311 Score = 83.8 bits (42), Expect = 3e-13 Identities = 66/74 (89%) Strand = Plus / Minus Query: 167 tggtatgcctggtgggagtcagcaggatatttcggggcagaccctgcaagctcaaaacca 226 |||||| |||||||||| ||| |||||||||| |||||||| ||||||||||||| ||| Sbjct: 26195 tggtattcctggtgggaatcatcaggatattttggggcagatgctgcaagctcaaagcca 26136 Query: 227 ccctttgttatagt 240 || ||||||||||| Sbjct: 26135 ccatttgttatagt 26122 Score = 81.8 bits (41), Expect = 1e-12 Identities = 56/61 (91%) Strand = Plus / Minus Query: 245 ccacctccgaatgtgactggagcgcttcatattggtcatgcacttacagtggctatagag 304 |||||||| ||||| ||||||||||||||||| || ||||||||||| |||||||||||| Sbjct: 25995 ccacctccaaatgtcactggagcgcttcatataggccatgcacttacggtggctatagag 25936 Query: 305 g 305 | Sbjct: 25935 g 25935
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 135 bits (68), Expect = 1e-28 Identities = 125/144 (86%) Strand = Plus / Plus Query: 6 cttctgatggacctaagaaaagtgagaagaagcaaaagaagaaggctgcggatgatgaaa 65 |||| ||||||||||||||||| ||||||||||||| |||||| |||| ||| ||||| | Sbjct: 27627643 cttcagatggacctaagaaaagcgagaagaagcaaaggaagaaagctgtggaggatgaga 27627702 Query: 66 accccgaagatttcattgatcctgagacccctagtgggcagaagaaatcgcttgcacctc 125 | || || |||||||||||||| || || ||| |||||||||||||| |||||| ||| Sbjct: 27627703 atcctgaggatttcattgatccagacactcctcatgggcagaagaaatttcttgcatctc 27627762 Query: 126 aaatggctaagcagtatagcccaa 149 ||||||| |||||||||||||||| Sbjct: 27627763 aaatggccaagcagtatagcccaa 27627786 Score = 117 bits (59), Expect = 2e-23 Identities = 122/143 (85%) Strand = Plus / Plus Query: 6 cttctgatggacctaagaaaagtgagaagaagcaaaagaagaaggctgcggatgatgaaa 65 |||| ||||| ||||| ||||||||||||||||||| |||||| |||| || ||||| | Sbjct: 645983 cttcagatggtcctaaaaaaagtgagaagaagcaaaggaagaaagctgttgaggatgaga 646042 Query: 66 accccgaagatttcattgatcctgagacccctagtgggcagaagaaatcgcttgcacctc 125 | || || |||||||||||||| || || ||| |||||||||||||| |||||| ||| Sbjct: 646043 atcctgaggatttcattgatccagacactcctcatgggcagaagaaatttcttgcatctc 646102 Query: 126 aaatggctaagcagtatagccca 148 ||||||| ||||||||||||||| Sbjct: 646103 aaatggccaagcagtatagccca 646125 Score = 83.8 bits (42), Expect = 3e-13 Identities = 66/74 (89%) Strand = Plus / Plus Query: 167 tggtatgcctggtgggagtcagcaggatatttcggggcagaccctgcaagctcaaaacca 226 |||||| |||||||||| ||| |||||||||| |||||||| ||||||||||||| ||| Sbjct: 27627902 tggtattcctggtgggaatcatcaggatattttggggcagatgctgcaagctcaaagcca 27627961 Query: 227 ccctttgttatagt 240 || ||||||||||| Sbjct: 27627962 ccatttgttatagt 27627975 Score = 83.8 bits (42), Expect = 3e-13 Identities = 99/118 (83%) Strand = Plus / Minus Query: 50 gctgcggatgatgaaaaccccgaagatttcattgatcctgagacccctagtgggcagaag 109 |||| ||| |||||||| || |||||||| ||||||| || || |||| |||||||||| Sbjct: 12400195 gctgtggaggatgaaaatcctgaagattttattgatcaagacactcctaatgggcagaag 12400136 Query: 110 aaatcgcttgcacctcaaatggctaagcagtatagcccaagtacagtggaaaaatcgt 167 ||| |||||||||||||||||| || |||||| ||||||| || || || ||||||| Sbjct: 12400135 aaactgcttgcacctcaaatggccaatcagtattgcccaagcacggttgagaaatcgt 12400078 Score = 81.8 bits (41), Expect = 1e-12 Identities = 56/61 (91%) Strand = Plus / Plus Query: 245 ccacctccgaatgtgactggagcgcttcatattggtcatgcacttacagtggctatagag 304 |||||||| ||||| ||||||||||||||||| || ||||||||||| |||||||||||| Sbjct: 27628102 ccacctccaaatgtcactggagcgcttcatataggccatgcacttacggtggctatagag 27628161 Query: 305 g 305 | Sbjct: 27628162 g 27628162 Score = 75.8 bits (38), Expect = 8e-11 Identities = 65/74 (87%) Strand = Plus / Minus Query: 167 tggtatgcctggtgggagtcagcaggatatttcggggcagaccctgcaagctcaaaacca 226 ||||||||||||||||| ||| |||||||||| ||||||| |||||||| |||| ||| Sbjct: 12399979 tggtatgcctggtgggaatcatcaggatattttagggcagattctgcaagcacaaagcca 12399920 Query: 227 ccctttgttatagt 240 || ||||||||||| Sbjct: 12399919 ccatttgttatagt 12399906 Score = 73.8 bits (37), Expect = 3e-10 Identities = 55/61 (90%) Strand = Plus / Minus Query: 245 ccacctccgaatgtgactggagcgcttcatattggtcatgcacttacagtggctatagag 304 |||||||| |||||||||||||| ||||| || || ||||| |||||||||||||||||| Sbjct: 12399751 ccacctccaaatgtgactggagctcttcacataggccatgctcttacagtggctatagag 12399692 Query: 305 g 305 | Sbjct: 12399691 g 12399691 Score = 73.8 bits (37), Expect = 3e-10 Identities = 55/61 (90%) Strand = Plus / Plus Query: 245 ccacctccgaatgtgactggagcgcttcatattggtcatgcacttacagtggctatagag 304 |||||||| ||||| || ||||| |||||||| || |||||||||||||||||||||||| Sbjct: 646440 ccacctccaaatgtcaccggagcacttcatataggccatgcacttacagtggctatagag 646499 Query: 305 g 305 | Sbjct: 646500 g 646500 Score = 52.0 bits (26), Expect = 0.001 Identities = 41/46 (89%) Strand = Plus / Plus Query: 167 tggtatgcctggtgggagtcagcaggatatttcggggcagaccctg 212 ||||||||||||||||| || |||||||||| |||||||| |||| Sbjct: 646240 tggtatgcctggtgggaatcgtcaggatattttggggcagatcctg 646285 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 26 agtgagaagaagcaaaagaagaag 49 |||||||||||| ||||||||||| Sbjct: 14380606 agtgagaagaagaaaaagaagaag 14380629
>gb|AC120508.3| Oryza sativa chromosome 3 BAC OSJNBb0021O11 genomic sequence, complete sequence Length = 123406 Score = 135 bits (68), Expect = 1e-28 Identities = 125/144 (86%) Strand = Plus / Minus Query: 6 cttctgatggacctaagaaaagtgagaagaagcaaaagaagaaggctgcggatgatgaaa 65 |||| ||||||||||||||||| ||||||||||||| |||||| |||| ||| ||||| | Sbjct: 14194 cttcagatggacctaagaaaagcgagaagaagcaaaggaagaaagctgtggaggatgaga 14135 Query: 66 accccgaagatttcattgatcctgagacccctagtgggcagaagaaatcgcttgcacctc 125 | || || |||||||||||||| || || ||| |||||||||||||| |||||| ||| Sbjct: 14134 atcctgaggatttcattgatccagacactcctcatgggcagaagaaatttcttgcatctc 14075 Query: 126 aaatggctaagcagtatagcccaa 149 ||||||| |||||||||||||||| Sbjct: 14074 aaatggccaagcagtatagcccaa 14051 Score = 83.8 bits (42), Expect = 3e-13 Identities = 66/74 (89%) Strand = Plus / Minus Query: 167 tggtatgcctggtgggagtcagcaggatatttcggggcagaccctgcaagctcaaaacca 226 |||||| |||||||||| ||| |||||||||| |||||||| ||||||||||||| ||| Sbjct: 13935 tggtattcctggtgggaatcatcaggatattttggggcagatgctgcaagctcaaagcca 13876 Query: 227 ccctttgttatagt 240 || ||||||||||| Sbjct: 13875 ccatttgttatagt 13862 Score = 81.8 bits (41), Expect = 1e-12 Identities = 56/61 (91%) Strand = Plus / Minus Query: 245 ccacctccgaatgtgactggagcgcttcatattggtcatgcacttacagtggctatagag 304 |||||||| ||||| ||||||||||||||||| || ||||||||||| |||||||||||| Sbjct: 13735 ccacctccaaatgtcactggagcgcttcatataggccatgcacttacggtggctatagag 13676 Query: 305 g 305 | Sbjct: 13675 g 13675
>gb|AC121490.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0005F16, complete sequence Length = 160053 Score = 117 bits (59), Expect = 2e-23 Identities = 122/143 (85%) Strand = Plus / Plus Query: 6 cttctgatggacctaagaaaagtgagaagaagcaaaagaagaaggctgcggatgatgaaa 65 |||| ||||| ||||| ||||||||||||||||||| |||||| |||| || ||||| | Sbjct: 31866 cttcagatggtcctaaaaaaagtgagaagaagcaaaggaagaaagctgttgaggatgaga 31925 Query: 66 accccgaagatttcattgatcctgagacccctagtgggcagaagaaatcgcttgcacctc 125 | || || |||||||||||||| || || ||| |||||||||||||| |||||| ||| Sbjct: 31926 atcctgaggatttcattgatccagacactcctcatgggcagaagaaatttcttgcatctc 31985 Query: 126 aaatggctaagcagtatagccca 148 ||||||| ||||||||||||||| Sbjct: 31986 aaatggccaagcagtatagccca 32008 Score = 73.8 bits (37), Expect = 3e-10 Identities = 55/61 (90%) Strand = Plus / Plus Query: 245 ccacctccgaatgtgactggagcgcttcatattggtcatgcacttacagtggctatagag 304 |||||||| ||||| || ||||| |||||||| || |||||||||||||||||||||||| Sbjct: 32323 ccacctccaaatgtcaccggagcacttcatataggccatgcacttacagtggctatagag 32382 Query: 305 g 305 | Sbjct: 32383 g 32383 Score = 52.0 bits (26), Expect = 0.001 Identities = 41/46 (89%) Strand = Plus / Plus Query: 167 tggtatgcctggtgggagtcagcaggatatttcggggcagaccctg 212 ||||||||||||||||| || |||||||||| |||||||| |||| Sbjct: 32123 tggtatgcctggtgggaatcgtcaggatattttggggcagatcctg 32168
>gb|AC125496.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0098H14, complete sequence Length = 132560 Score = 83.8 bits (42), Expect = 3e-13 Identities = 99/118 (83%) Strand = Plus / Minus Query: 50 gctgcggatgatgaaaaccccgaagatttcattgatcctgagacccctagtgggcagaag 109 |||| ||| |||||||| || |||||||| ||||||| || || |||| |||||||||| Sbjct: 62450 gctgtggaggatgaaaatcctgaagattttattgatcaagacactcctaatgggcagaag 62391 Query: 110 aaatcgcttgcacctcaaatggctaagcagtatagcccaagtacagtggaaaaatcgt 167 ||| |||||||||||||||||| || |||||| ||||||| || || || ||||||| Sbjct: 62390 aaactgcttgcacctcaaatggccaatcagtattgcccaagcacggttgagaaatcgt 62333 Score = 75.8 bits (38), Expect = 8e-11 Identities = 65/74 (87%) Strand = Plus / Minus Query: 167 tggtatgcctggtgggagtcagcaggatatttcggggcagaccctgcaagctcaaaacca 226 ||||||||||||||||| ||| |||||||||| ||||||| |||||||| |||| ||| Sbjct: 62234 tggtatgcctggtgggaatcatcaggatattttagggcagattctgcaagcacaaagcca 62175 Query: 227 ccctttgttatagt 240 || ||||||||||| Sbjct: 62174 ccatttgttatagt 62161 Score = 73.8 bits (37), Expect = 3e-10 Identities = 55/61 (90%) Strand = Plus / Minus Query: 245 ccacctccgaatgtgactggagcgcttcatattggtcatgcacttacagtggctatagag 304 |||||||| |||||||||||||| ||||| || || ||||| |||||||||||||||||| Sbjct: 62006 ccacctccaaatgtgactggagctcttcacataggccatgctcttacagtggctatagag 61947 Query: 305 g 305 | Sbjct: 61946 g 61946
>emb|Z99971.1|MAZ99971 Musa acuminata mRNA for unknown ripening-related protein (clone pBAN ED92) Length = 748 Score = 52.0 bits (26), Expect = 0.001 Identities = 59/70 (84%) Strand = Plus / Plus Query: 215 agctcaaaaccaccctttgttatagttctaccacctccgaatgtgactggagcgcttcat 274 |||||||||||| | |||||||| || || |||||||| ||||| ||||| || |||| | Sbjct: 547 agctcaaaaccatcttttgttattgtacttccacctccaaatgttactggtgctcttcct 606 Query: 275 attggtcatg 284 || ||||||| Sbjct: 607 ataggtcatg 616
>ref|NM_101328.2| Arabidopsis thaliana TWN2 (TWIN 2); ATP binding / tRNA ligase/ valine-tRNA ligase AT1G14610 (TWN2) mRNA, complete cds Length = 3616 Score = 50.1 bits (25), Expect = 0.005 Identities = 58/69 (84%) Strand = Plus / Plus Query: 224 ccaccctttgttatagttctaccacctccgaatgtgactggagcgcttcatattggtcat 283 ||||| ||||| || ||||| || ||||| |||||||||||||| | |||||||| ||| Sbjct: 533 ccaccttttgtaattgttcttcctcctccaaatgtgactggagccttgcatattggccat 592 Query: 284 gcacttaca 292 || |||||| Sbjct: 593 gcgcttaca 601
>gb|BT010735.1| Arabidopsis thaliana At1g14610 gene, complete cds Length = 3195 Score = 50.1 bits (25), Expect = 0.005 Identities = 58/69 (84%) Strand = Plus / Plus Query: 224 ccaccctttgttatagttctaccacctccgaatgtgactggagcgcttcatattggtcat 283 ||||| ||||| || ||||| || ||||| |||||||||||||| | |||||||| ||| Sbjct: 370 ccaccttttgtaattgttcttcctcctccaaatgtgactggagccttgcatattggccat 429 Query: 284 gcacttaca 292 || |||||| Sbjct: 430 gcgcttaca 438
>gb|AY062693.1| Arabidopsis thaliana similar to valyl tRNA synthetase (At1g14610; T5E21.11) mRNA, complete cds Length = 3556 Score = 50.1 bits (25), Expect = 0.005 Identities = 58/69 (84%) Strand = Plus / Plus Query: 224 ccaccctttgttatagttctaccacctccgaatgtgactggagcgcttcatattggtcat 283 ||||| ||||| || ||||| || ||||| |||||||||||||| | |||||||| ||| Sbjct: 497 ccaccttttgtaattgttcttcctcctccaaatgtgactggagccttgcatattggccat 556 Query: 284 gcacttaca 292 || |||||| Sbjct: 557 gcgcttaca 565
>gb|AC025471.6| Homo sapiens chromosome 5 clone RP11-138C1, complete sequence Length = 148607 Score = 50.1 bits (25), Expect = 0.005 Identities = 28/29 (96%) Strand = Plus / Minus Query: 19 taagaaaagtgagaagaagcaaaagaaga 47 ||||||||| ||||||||||||||||||| Sbjct: 117891 taagaaaagggagaagaagcaaaagaaga 117863
>gb|U89986.1|ATU89986 Arabidopsis thaliana valyl tRNA synthetase (valRS) mRNA, complete cds Length = 3604 Score = 50.1 bits (25), Expect = 0.005 Identities = 58/69 (84%) Strand = Plus / Plus Query: 224 ccaccctttgttatagttctaccacctccgaatgtgactggagcgcttcatattggtcat 283 ||||| ||||| || ||||| || ||||| |||||||||||||| | |||||||| ||| Sbjct: 533 ccaccttttgtaattgttcttcctcctccaaatgtgactggagccttgcatattggccat 592 Query: 284 gcacttaca 292 || |||||| Sbjct: 593 gcgcttaca 601
>ref|XM_322778.1| Neurospora crassa OR74A predicted protein (NCU03521.1) partial mRNA Length = 174 Score = 46.1 bits (23), Expect = 0.070 Identities = 23/23 (100%) Strand = Plus / Plus Query: 27 gtgagaagaagcaaaagaagaag 49 ||||||||||||||||||||||| Sbjct: 128 gtgagaagaagcaaaagaagaag 150
>ref|XM_951707.1| Neurospora crassa OR74A hypothetical protein (NCU03521.1) partial mRNA Length = 174 Score = 46.1 bits (23), Expect = 0.070 Identities = 23/23 (100%) Strand = Plus / Plus Query: 27 gtgagaagaagcaaaagaagaag 49 ||||||||||||||||||||||| Sbjct: 128 gtgagaagaagcaaaagaagaag 150
>emb|AL442043.1|NCB11E6 Neurospora crassa DNA linkage group II BAC clone B11E6 Length = 69943 Score = 46.1 bits (23), Expect = 0.070 Identities = 23/23 (100%) Strand = Plus / Plus Query: 27 gtgagaagaagcaaaagaagaag 49 ||||||||||||||||||||||| Sbjct: 16990 gtgagaagaagcaaaagaagaag 17012
>emb|AL390092.1|NCB2A19 Neurospora crassa DNA linkage group II BAC clone B2A19 Length = 72788 Score = 46.1 bits (23), Expect = 0.070 Identities = 23/23 (100%) Strand = Plus / Plus Query: 27 gtgagaagaagcaaaagaagaag 49 ||||||||||||||||||||||| Sbjct: 67500 gtgagaagaagcaaaagaagaag 67522
>gb|AC010657.3|AC010657 Genomic sequence for Arabidopsis thaliana BAC T5E21 from chromosome I, complete sequence Length = 83351 Score = 44.1 bits (22), Expect = 0.28 Identities = 46/54 (85%) Strand = Plus / Minus Query: 239 gttctaccacctccgaatgtgactggagcgcttcatattggtcatgcacttaca 292 ||||| || ||||| |||||||||||||| | |||||||| ||||| |||||| Sbjct: 50433 gttcttcctcctccaaatgtgactggagccttgcatattggccatgcgcttaca 50380
>gb|U93308.1|ATU93308 Arabidopsis thaliana decoy (DECOY) gene, complete cds and valyl tRNA synthetase (valRS) gene, partial cds Length = 4552 Score = 44.1 bits (22), Expect = 0.28 Identities = 46/54 (85%) Strand = Plus / Plus Query: 239 gttctaccacctccgaatgtgactggagcgcttcatattggtcatgcacttaca 292 ||||| || ||||| |||||||||||||| | |||||||| ||||| |||||| Sbjct: 4113 gttcttcctcctccaaatgtgactggagccttgcatattggccatgcgcttaca 4166
>ref|XM_648481.1| Entamoeba histolytica HM-1:IMSS glutamate synthase small subunit (78.t00007) partial mRNA Length = 1338 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 30 agaagaagcaaaagaagaagg 50 ||||||||||||||||||||| Sbjct: 921 agaagaagcaaaagaagaagg 941
>ref|XM_652212.1| Entamoeba histolytica HM-1:IMSS glutamate synthase small subunit (3.t00052) partial mRNA Length = 1293 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 30 agaagaagcaaaagaagaagg 50 ||||||||||||||||||||| Sbjct: 876 agaagaagcaaaagaagaagg 896
>gb|AC113059.7| Mus musculus chromosome 10, clone RP23-255F14, complete sequence Length = 211296 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 20 aagaaaagtgagaagaagcaaaagaagaa 48 |||||||| |||| ||||||||||||||| Sbjct: 122612 aagaaaagagagatgaagcaaaagaagaa 122640
>gb|AC021709.12| Mus musculus chromosome 10, clone RP23-194I3, complete sequence Length = 319367 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 20 aagaaaagtgagaagaagcaaaagaagaa 48 |||||||| |||| ||||||||||||||| Sbjct: 213820 aagaaaagagagatgaagcaaaagaagaa 213848
>emb|AL354856.9| Human DNA sequence from clone RP11-290P3 on chromosome 6, complete sequence Length = 113146 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 19 taagaaaagtgagaagaagcaaaag 43 |||||||||||||||||| |||||| Sbjct: 33678 taagaaaagtgagaagaaacaaaag 33654
>emb|BX323033.6| Zebrafish DNA sequence from clone DKEYP-63D11, complete sequence Length = 171058 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 31 gaagaagcaaaagaagaaggc 51 ||||||||||||||||||||| Sbjct: 145157 gaagaagcaaaagaagaaggc 145137
>emb|BX323861.10| Zebrafish DNA sequence from clone CH211-209F23 in linkage group 2, complete sequence Length = 173663 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 29 gagaagaagcaaaagaagaag 49 ||||||||||||||||||||| Sbjct: 95728 gagaagaagcaaaagaagaag 95748
>gb|AY122165.1| Drosophila melanogaster LD24232 full insert cDNA Length = 2283 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 29 gagaagaagcaaaagaagaag 49 ||||||||||||||||||||| Sbjct: 1582 gagaagaagcaaaagaagaag 1602
>ref|NM_133088.1| Drosophila melanogaster Ing3 CG6632-RA (Ing3), mRNA Length = 2298 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 29 gagaagaagcaaaagaagaag 49 ||||||||||||||||||||| Sbjct: 1620 gagaagaagcaaaagaagaag 1640
>gb|AE009951.2| Fusobacterium nucleatum subsp. nucleatum ATCC 25586, complete genome Length = 2174500 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 30 agaagaagcaaaagaagaagg 50 ||||||||||||||||||||| Sbjct: 1101615 agaagaagcaaaagaagaagg 1101635
>gb|AC156386.7| Mus musculus chromosome 3, clone RP23-224L6, complete sequence Length = 167771 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 272 catattggtcatgcacttaca 292 ||||||||||||||||||||| Sbjct: 92143 catattggtcatgcacttaca 92163
>gb|AC008936.6| Homo sapiens chromosome 5 clone CTD-2309I16, complete sequence Length = 56515 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 8 tctgatggacctaagaaaagt 28 ||||||||||||||||||||| Sbjct: 41453 tctgatggacctaagaaaagt 41473
>gb|AC026461.11| Homo sapiens chromosome 16 clone RP11-249C24, complete sequence Length = 168392 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 21 agaaaagtgagaagaagcaaaagaagaag 49 ||||||| ||||||||| ||||||||||| Sbjct: 133698 agaaaagggagaagaaggaaaagaagaag 133670
>gb|AC012373.14|AC012373 Drosophila melanogaster, chromosome X, region 17B-17C, BAC clone BACR17H16, complete sequence Length = 182080 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 29 gagaagaagcaaaagaagaag 49 ||||||||||||||||||||| Sbjct: 144022 gagaagaagcaaaagaagaag 144002
>gb|AC009155.3|AC009155 Homo sapiens chromosome 16 clone RP11-5A3, complete sequence Length = 143860 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 21 agaaaagtgagaagaagcaaaagaagaag 49 ||||||| ||||||||| ||||||||||| Sbjct: 91285 agaaaagggagaagaaggaaaagaagaag 91313
>gb|AC006670.1| Caenorhabditis elegans cosmid K07A3, complete sequence Length = 36454 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 25 aagtgagaagaagcaaaagaagaag 49 ||||||||||||| ||||||||||| Sbjct: 29019 aagtgagaagaagaaaaagaagaag 28995
>gb|AE003509.5| Drosophila melanogaster chromosome X, section 61 of 74 of the complete sequence Length = 315109 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 29 gagaagaagcaaaagaagaag 49 ||||||||||||||||||||| Sbjct: 208446 gagaagaagcaaaagaagaag 208426
>emb|BX284666.7| Zebrafish DNA sequence from clone CH211-190K17 in linkage group 22, complete sequence Length = 139272 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 29 gagaagaagcaaaagaagaag 49 ||||||||||||||||||||| Sbjct: 60233 gagaagaagcaaaagaagaag 60213
>gb|BC068350.1| Danio rerio SERPINE1 mRNA binding protein 1, mRNA (cDNA clone MGC:85661 IMAGE:6960084), complete cds Length = 2317 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 31 gaagaagcaaaagaagaaggc 51 ||||||||||||||||||||| Sbjct: 842 gaagaagcaaaagaagaaggc 862
>gb|BC046876.1| Danio rerio SERPINE1 mRNA binding protein 1, mRNA (cDNA clone MGC:55489 IMAGE:2640661), complete cds Length = 2306 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 31 gaagaagcaaaagaagaaggc 51 ||||||||||||||||||||| Sbjct: 858 gaagaagcaaaagaagaaggc 878
>ref|NM_214714.1| Danio rerio SERPINE1 mRNA binding protein 1 (serbp1), mRNA Length = 2317 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 31 gaagaagcaaaagaagaaggc 51 ||||||||||||||||||||| Sbjct: 842 gaagaagcaaaagaagaaggc 862
>gb|AC154043.1| Drosophila melanogaster clone BACR39O11, complete sequence Length = 182468 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 30 agaagaagcaaaagaagaag 49 |||||||||||||||||||| Sbjct: 2720 agaagaagcaaaagaagaag 2701
>gb|AC154041.1| Drosophila melanogaster clone BACR43N11, complete sequence Length = 157286 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 agaagaagcaaaagaagaag 49 |||||||||||||||||||| Sbjct: 8507 agaagaagcaaaagaagaag 8526
>gb|CP000111.1| Prochlorococcus marinus str. MIT 9312, complete genome Length = 1709204 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 262 tggagcgcttcatattggtcatgc 285 ||||||||||||||| |||||||| Sbjct: 231178 tggagcgcttcatatgggtcatgc 231201
>ref|NM_184594.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1776 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 26 agtgagaagaagcaaaagaagaag 49 |||||||||||| ||||||||||| Sbjct: 1654 agtgagaagaagaaaaagaagaag 1677
>gb|U80022.2| Caenorhabditis elegans cosmid F12F3, complete sequence Length = 36859 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 30 agaagaagcaaaagaagaag 49 |||||||||||||||||||| Sbjct: 13827 agaagaagcaaaagaagaag 13808
>gb|AC102589.9| Mus musculus chromosome 8, clone RP23-334O19, complete sequence Length = 234829 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 32 aagaagcaaaagaagaaggc 51 |||||||||||||||||||| Sbjct: 210976 aagaagcaaaagaagaaggc 210995
>gb|M98552.2| Caenorhabditis elegans cosmid ZK370, complete sequence Length = 38725 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 29 gagaagaagcaaaagaagaaggct 52 ||||||||||| |||||||||||| Sbjct: 25828 gagaagaagcagaagaagaaggct 25805
>ref|XM_380515.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG00339.1) partial mRNA Length = 2079 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 tgagaagaagcaaaagaaga 47 |||||||||||||||||||| Sbjct: 1503 tgagaagaagcaaaagaaga 1522
>emb|BX571802.15| Zebrafish DNA sequence from clone CH211-197A16 in linkage group 10, complete sequence Length = 196999 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 219 caaaaccaccctttgttata 238 |||||||||||||||||||| Sbjct: 23238 caaaaccaccctttgttata 23257
>gb|AC130838.3| Mus musculus BAC clone RP24-369B4 from chromosome 12, complete sequence Length = 149814 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 agaagaagcaaaagaagaag 49 |||||||||||||||||||| Sbjct: 133421 agaagaagcaaaagaagaag 133440
>gb|AC146539.2| Gasterosteus aculeatus clone CH213-129C17, complete sequence Length = 202686 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 agaagaagcaaaagaagaag 49 |||||||||||||||||||| Sbjct: 73837 agaagaagcaaaagaagaag 73856
>ref|XM_720753.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY00631) partial mRNA Length = 555 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 agaagaagcaaaagaagaag 49 |||||||||||||||||||| Sbjct: 420 agaagaagcaaaagaagaag 439 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 agaagaagcaaaagaagaag 49 |||||||||||||||||||| Sbjct: 408 agaagaagcaaaagaagaag 427 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 agaagaagcaaaagaagaag 49 |||||||||||||||||||| Sbjct: 396 agaagaagcaaaagaagaag 415
>gb|AC164313.3| Mus musculus BAC clone RP23-24F12 from chromosome 3, complete sequence Length = 196368 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 agaagaagcaaaagaagaag 49 |||||||||||||||||||| Sbjct: 182520 agaagaagcaaaagaagaag 182539
>gb|AC146690.1| Gasterosteus aculeatus clone CH213-156J22, complete sequence Length = 166930 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 agaagaagcaaaagaagaag 49 |||||||||||||||||||| Sbjct: 44512 agaagaagcaaaagaagaag 44531
>ref|XM_499639.1| Yarrowia lipolytica CLIB122, YALI0A01023g predicted mRNA Length = 3237 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 28 tgagaagaagcaaaagaagaaggc 51 |||||||||||| ||||||||||| Sbjct: 3114 tgagaagaagcagaagaagaaggc 3137
>emb|CR524829.5| Zebrafish DNA sequence from clone CH211-227N11 in linkage group 16, complete sequence Length = 49218 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 gcacctcaaatggctaagca 138 |||||||||||||||||||| Sbjct: 39023 gcacctcaaatggctaagca 39042
>gb|AC151836.3| Mus musculus BAC clone RP23-359F5 from chromosome 14, complete sequence Length = 230502 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 agaagaagcaaaagaagaag 49 |||||||||||||||||||| Sbjct: 161974 agaagaagcaaaagaagaag 161993
>gb|AC165428.1| Strongylocentrotus purpuratus BAC clone contig containing Eve, the hox cluster, cholinesterase, and COLP5alpha genes, complete sequence Length = 796348 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 agaagaagcaaaagaagaag 49 |||||||||||||||||||| Sbjct: 230943 agaagaagcaaaagaagaag 230962
>gb|AC141561.5| Mus musculus BAC clone RP23-457C15 from chromosome 3, complete sequence Length = 169547 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 agaagaagcaaaagaagaag 49 |||||||||||||||||||| Sbjct: 138126 agaagaagcaaaagaagaag 138145
>emb|AL935056.18| Mouse DNA sequence from clone RP23-185F7 on chromosome 2, complete sequence Length = 146086 Score = 40.1 bits (20), Expect = 4.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 21 agaaaagtgagaagaagcaaaagaagaa 48 ||||||||||||| ||||||||| |||| Sbjct: 3509 agaaaagtgagaaaaagcaaaaggagaa 3536
>gb|AC008134.3| Homo sapiens 3q26.2-27 BAC RPCI11-263C16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 175132 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 220 aaaaccaccctttgttatagttct 243 ||||||| |||||||||||||||| Sbjct: 106203 aaaaccatcctttgttatagttct 106226
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 gcgcttcatattggtcatgc 285 |||||||||||||||||||| Sbjct: 3537935 gcgcttcatattggtcatgc 3537954
>gb|AC004411.3| Arabidopsis thaliana chromosome 2 clone F14M4 map CIC06C03, complete sequence Length = 106329 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 30 agaagaagcaaaagaagaag 49 |||||||||||||||||||| Sbjct: 81803 agaagaagcaaaagaagaag 81784
>ref|NM_079201.2| Drosophila melanogaster mitochondrial ribosomal protein S6 CG15016-RA (mRpS6), mRNA Length = 627 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 agaagaagcaaaagaagaag 49 |||||||||||||||||||| Sbjct: 526 agaagaagcaaaagaagaag 545
>gb|AY070674.1| Drosophila melanogaster RH10862 full length cDNA Length = 639 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 agaagaagcaaaagaagaag 49 |||||||||||||||||||| Sbjct: 526 agaagaagcaaaagaagaag 545
>gb|AC099762.1| Caenorhabditis briggsae cosmid CB021D15, complete sequence Length = 98394 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 26 agtgagaagaagcaaaagaagaag 49 |||||||||||| ||||||||||| Sbjct: 29059 agtgagaagaaggaaaagaagaag 29082
>gb|AC082644.10| Oryza sativa chromosome 3 BAC OSJNBa0013M12 genomic sequence, complete sequence Length = 158714 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 26 agtgagaagaagcaaaagaagaag 49 |||||||||||| ||||||||||| Sbjct: 134860 agtgagaagaagaaaaagaagaag 134883
>gb|AC153628.3| Mus musculus 6 BAC RP23-13B24 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 219322 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 acctaagaaaagtgagaaga 35 |||||||||||||||||||| Sbjct: 125144 acctaagaaaagtgagaaga 125163
>ref|XM_392112.2| PREDICTED: Apis mellifera similar to GA15443-PA (LOC408569), mRNA Length = 1372 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 agaagaagcaaaagaagaag 49 |||||||||||||||||||| Sbjct: 318 agaagaagcaaaagaagaag 337
>emb|BX824082.1|CNS0A5IN Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH20ZE07 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1637 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 agaagaagcaaaagaagaag 49 |||||||||||||||||||| Sbjct: 1450 agaagaagcaaaagaagaag 1469
>gb|AC044787.6|AC044787 Homo sapiens chromosome 15 clone CTD-2270N23 map 15q21, complete sequence Length = 148147 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 atcctgagacccctagtggg 103 |||||||||||||||||||| Sbjct: 82670 atcctgagacccctagtggg 82689
>gb|AC104638.11| Homo sapiens 3 BAC RP11-689C17 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 34051 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 29 gagaagaagcaaaagaagaa 48 |||||||||||||||||||| Sbjct: 9108 gagaagaagcaaaagaagaa 9127
>gb|AE000789.1| Borrelia burgdorferi B31 plasmid lp28-4, complete sequence Length = 27323 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 32 aagaagcaaaagaagaaggc 51 |||||||||||||||||||| Sbjct: 21408 aagaagcaaaagaagaaggc 21389
>gb|AF229129.1|AF229129 Tahyna virus middle segment RNA ORF (M-RNA) mRNA, complete cds Length = 4491 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 gtgagaagaagcaaaagaag 46 |||||||||||||||||||| Sbjct: 1563 gtgagaagaagcaaaagaag 1582
>dbj|AK103723.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033138C07, full insert sequence Length = 1987 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 26 agtgagaagaagcaaaagaagaag 49 |||||||||||| ||||||||||| Sbjct: 1733 agtgagaagaagaaaaagaagaag 1756
>dbj|AK063289.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-113-E01, full insert sequence Length = 2185 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 26 agtgagaagaagcaaaagaagaag 49 |||||||||||| ||||||||||| Sbjct: 1732 agtgagaagaagaaaaagaagaag 1755
>emb|AL954652.3| Zebrafish DNA sequence from clone CH211-239O15 in linkage group 4, complete sequence Length = 152900 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 agaagaagcaaaagaagaag 49 |||||||||||||||||||| Sbjct: 71972 agaagaagcaaaagaagaag 71991
>emb|Z71185.1|CEC35A5 Caenorhabditis elegans Cosmid C35A5, complete sequence Length = 42031 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 agaagaagcaaaagaagaag 49 |||||||||||||||||||| Sbjct: 29397 agaagaagcaaaagaagaag 29416
>gb|AF123485.1|AF123485 Tahyna virus polyprotein mRNA, complete cds Length = 4490 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 gtgagaagaagcaaaagaag 46 |||||||||||||||||||| Sbjct: 1563 gtgagaagaagcaaaagaag 1582
>gb|AE003481.3| Drosophila melanogaster chromosome 3L, section 15 of 83 of the complete sequence Length = 315988 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 agaagaagcaaaagaagaag 49 |||||||||||||||||||| Sbjct: 56462 agaagaagcaaaagaagaag 56481
>gb|AC102211.23| Mus musculus chromosome 3, clone RP24-369F14, complete sequence Length = 142790 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 30 agaagaagcaaaagaagaag 49 |||||||||||||||||||| Sbjct: 114701 agaagaagcaaaagaagaag 114682
>emb|Z81140.1|CEW10G6 Caenorhabditis elegans Cosmid W10G6, complete sequence Length = 26271 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 agaagaagcaaaagaagaag 49 |||||||||||||||||||| Sbjct: 13640 agaagaagcaaaagaagaag 13659
>gb|AC139294.4| Mus musculus BAC clone RP24-239E14 from 14, complete sequence Length = 183363 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 agaagaagcaaaagaagaag 49 |||||||||||||||||||| Sbjct: 44571 agaagaagcaaaagaagaag 44590
>emb|CR382127.1| Yarrowia lipolytica chromosome A of strain CLIB122 of Yarrowia lipolytica Length = 2303261 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 28 tgagaagaagcaaaagaagaaggc 51 |||||||||||| ||||||||||| Sbjct: 140053 tgagaagaagcagaagaagaaggc 140076
>gb|AC147360.5| Mus musculus BAC clone RP24-241D11 from chromosome 12, complete sequence Length = 160968 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 30 agaagaagcaaaagaagaag 49 |||||||||||||||||||| Sbjct: 140094 agaagaagcaaaagaagaag 140075
>emb|AL844871.11| Mouse DNA sequence from clone RP23-271B15 on chromosome 2, complete sequence Length = 179754 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 24 aaagtgagaagaagcaaaag 43 |||||||||||||||||||| Sbjct: 26519 aaagtgagaagaagcaaaag 26500
>gb|AY130758.1| Caenorhabditis elegans titin locus, complete sequence Length = 126899 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 agaagaagcaaaagaagaag 49 |||||||||||||||||||| Sbjct: 94213 agaagaagcaaaagaagaag 94232
>gb|AC009677.21| Homo sapiens chromosome 15, clone RP11-54P21, complete sequence Length = 194529 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 204 cagaccctgcaagctcaaaaccac 227 |||||||| ||||||||||||||| Sbjct: 90126 cagacccttcaagctcaaaaccac 90103 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,832,248 Number of Sequences: 3902068 Number of extensions: 2832248 Number of successful extensions: 58247 Number of sequences better than 10.0: 91 Number of HSP's better than 10.0 without gapping: 95 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 57920 Number of HSP's gapped (non-prelim): 326 length of query: 329 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 307 effective length of database: 17,147,199,772 effective search space: 5264190330004 effective search space used: 5264190330004 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)