ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl20e09 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 196 bits (99), Expect = 4e-47 Identities = 341/422 (80%) Strand = Plus / Minus Query: 15 tctatacaagaggagcagctcaagagcatgcaagcggaaatggcacgactgtctttagag 74 ||||||||||| ||||| ||||||||||||||||| |||||| |||| || || | ||| Sbjct: 25574690 tctatacaagaagagcaactcaagagcatgcaagccgaaatgacacggctatcactggag 25574631 Query: 75 aagcagttggcacaagtacaggagaagctgcggcttttgtctcttgaaaagcacggtgaa 134 ||||| ||||||||| |||||||||| | | ||| ||||||||||| | |||||| Sbjct: 25574630 aagcaactggcacaagccaaggagaagctaagaatcttgactcttgaaaagaatggtgaa 25574571 Query: 135 acaagcaagtgtaaggatgttgaagcaagcaagcttatgcttcagaaagaattggagatg 194 |||| |||| ||| || ||||||||||||| ||| ||||| || || |||| | | Sbjct: 25574570 gcaagtaagtttaatgacattgaagcaagcaaagttagacttcaaaatgatctggacaag 25574511 Query: 195 attcgagaagagaaccgtaaactggatgatcaaaaccactcctcgacatccgtgataatt 254 ||||| |||||||||||||| ||||| || |||||| |||| |||| || | |||||| Sbjct: 25574510 attcgcgaagagaaccgtaagctggaggagcaaaacaactcttcgatctcagcaataatt 25574451 Query: 255 cgtctgcaggatgagatcatatccttgaagaatgcacaacggaaacttgaggaggaggtg 314 ||||| |||||||| | || |||||||||||||| || ||| ||||||||| |||||| Sbjct: 25574450 cgtctacaggatgaagtaatttccttgaagaatgcccagcggctacttgaggaagaggtg 25574391 Query: 315 tctcggcatgtggaggaaaagaaggcacttcaacatgagctttcacacatanagaatgac 374 ||||||||||||||||||||||||| ||||| |||||||||| || | || ||||| Sbjct: 25574390 tctcggcatgtggaggaaaagaaggtgcttcagtatgagctttcccagctcaaggatgac 25574331 Query: 375 agaggtgacgtcgagaggaagcacttctcaatcaaggagcaaatacaagcggttaatttc 434 | |||||| ||||||||| || || || |||||||| |||||||| | ||| |||||| Sbjct: 25574330 aagggtgactccgagaggaaacatttttcgatcaaggaacaaatacaggtggtgaatttc 25574271 Query: 435 aa 436 || Sbjct: 25574270 aa 25574269
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 196 bits (99), Expect = 4e-47 Identities = 341/422 (80%) Strand = Plus / Minus Query: 15 tctatacaagaggagcagctcaagagcatgcaagcggaaatggcacgactgtctttagag 74 ||||||||||| ||||| ||||||||||||||||| |||||| |||| || || | ||| Sbjct: 25502866 tctatacaagaagagcaactcaagagcatgcaagccgaaatgacacggctatcactggag 25502807 Query: 75 aagcagttggcacaagtacaggagaagctgcggcttttgtctcttgaaaagcacggtgaa 134 ||||| ||||||||| |||||||||| | | ||| ||||||||||| | |||||| Sbjct: 25502806 aagcaactggcacaagccaaggagaagctaagaatcttgactcttgaaaagaatggtgaa 25502747 Query: 135 acaagcaagtgtaaggatgttgaagcaagcaagcttatgcttcagaaagaattggagatg 194 |||| |||| ||| || ||||||||||||| ||| ||||| || || |||| | | Sbjct: 25502746 gcaagtaagtttaatgacattgaagcaagcaaagttagacttcaaaatgatctggacaag 25502687 Query: 195 attcgagaagagaaccgtaaactggatgatcaaaaccactcctcgacatccgtgataatt 254 ||||| |||||||||||||| ||||| || |||||| |||| |||| || | |||||| Sbjct: 25502686 attcgcgaagagaaccgtaagctggaggagcaaaacaactcttcgatctcagcaataatt 25502627 Query: 255 cgtctgcaggatgagatcatatccttgaagaatgcacaacggaaacttgaggaggaggtg 314 ||||| |||||||| | || |||||||||||||| || ||| ||||||||| |||||| Sbjct: 25502626 cgtctacaggatgaagtaatttccttgaagaatgcccagcggctacttgaggaagaggtg 25502567 Query: 315 tctcggcatgtggaggaaaagaaggcacttcaacatgagctttcacacatanagaatgac 374 ||||||||||||||||||||||||| ||||| |||||||||| || | || ||||| Sbjct: 25502566 tctcggcatgtggaggaaaagaaggtgcttcagtatgagctttcccagctcaaggatgac 25502507 Query: 375 agaggtgacgtcgagaggaagcacttctcaatcaaggagcaaatacaagcggttaatttc 434 | |||||| ||||||||| || || || |||||||| |||||||| | ||| |||||| Sbjct: 25502506 aagggtgactccgagaggaaacatttttcgatcaaggaacaaatacaggtggtgaatttc 25502447 Query: 435 aa 436 || Sbjct: 25502446 aa 25502445
>emb|AL928781.4|CNS08CCB Oryza sativa chromosome 12, . BAC OSJNBa0070E09 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 144084 Score = 196 bits (99), Expect = 4e-47 Identities = 341/422 (80%) Strand = Plus / Minus Query: 15 tctatacaagaggagcagctcaagagcatgcaagcggaaatggcacgactgtctttagag 74 ||||||||||| ||||| ||||||||||||||||| |||||| |||| || || | ||| Sbjct: 144072 tctatacaagaagagcaactcaagagcatgcaagccgaaatgacacggctatcactggag 144013 Query: 75 aagcagttggcacaagtacaggagaagctgcggcttttgtctcttgaaaagcacggtgaa 134 ||||| ||||||||| |||||||||| | | ||| ||||||||||| | |||||| Sbjct: 144012 aagcaactggcacaagccaaggagaagctaagaatcttgactcttgaaaagaatggtgaa 143953 Query: 135 acaagcaagtgtaaggatgttgaagcaagcaagcttatgcttcagaaagaattggagatg 194 |||| |||| ||| || ||||||||||||| ||| ||||| || || |||| | | Sbjct: 143952 gcaagtaagtttaatgacattgaagcaagcaaagttagacttcaaaatgatctggacaag 143893 Query: 195 attcgagaagagaaccgtaaactggatgatcaaaaccactcctcgacatccgtgataatt 254 ||||| |||||||||||||| ||||| || |||||| |||| |||| || | |||||| Sbjct: 143892 attcgcgaagagaaccgtaagctggaggagcaaaacaactcttcgatctcagcaataatt 143833 Query: 255 cgtctgcaggatgagatcatatccttgaagaatgcacaacggaaacttgaggaggaggtg 314 ||||| |||||||| | || |||||||||||||| || ||| ||||||||| |||||| Sbjct: 143832 cgtctacaggatgaagtaatttccttgaagaatgcccagcggctacttgaggaagaggtg 143773 Query: 315 tctcggcatgtggaggaaaagaaggcacttcaacatgagctttcacacatanagaatgac 374 ||||||||||||||||||||||||| ||||| |||||||||| || | || ||||| Sbjct: 143772 tctcggcatgtggaggaaaagaaggtgcttcagtatgagctttcccagctcaaggatgac 143713 Query: 375 agaggtgacgtcgagaggaagcacttctcaatcaaggagcaaatacaagcggttaatttc 434 | |||||| ||||||||| || || || |||||||| |||||||| | ||| |||||| Sbjct: 143712 aagggtgactccgagaggaaacatttttcgatcaaggaacaaatacaggtggtgaatttc 143653 Query: 435 aa 436 || Sbjct: 143652 aa 143651
>emb|AL732537.4|CNS08C9C Oryza sativa chromosome 12, . BAC OSJNBa0036L12 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 127003 Score = 196 bits (99), Expect = 4e-47 Identities = 341/422 (80%) Strand = Plus / Plus Query: 15 tctatacaagaggagcagctcaagagcatgcaagcggaaatggcacgactgtctttagag 74 ||||||||||| ||||| ||||||||||||||||| |||||| |||| || || | ||| Sbjct: 99028 tctatacaagaagagcaactcaagagcatgcaagccgaaatgacacggctatcactggag 99087 Query: 75 aagcagttggcacaagtacaggagaagctgcggcttttgtctcttgaaaagcacggtgaa 134 ||||| ||||||||| |||||||||| | | ||| ||||||||||| | |||||| Sbjct: 99088 aagcaactggcacaagccaaggagaagctaagaatcttgactcttgaaaagaatggtgaa 99147 Query: 135 acaagcaagtgtaaggatgttgaagcaagcaagcttatgcttcagaaagaattggagatg 194 |||| |||| ||| || ||||||||||||| ||| ||||| || || |||| | | Sbjct: 99148 gcaagtaagtttaatgacattgaagcaagcaaagttagacttcaaaatgatctggacaag 99207 Query: 195 attcgagaagagaaccgtaaactggatgatcaaaaccactcctcgacatccgtgataatt 254 ||||| |||||||||||||| ||||| || |||||| |||| |||| || | |||||| Sbjct: 99208 attcgcgaagagaaccgtaagctggaggagcaaaacaactcttcgatctcagcaataatt 99267 Query: 255 cgtctgcaggatgagatcatatccttgaagaatgcacaacggaaacttgaggaggaggtg 314 ||||| |||||||| | || |||||||||||||| || ||| ||||||||| |||||| Sbjct: 99268 cgtctacaggatgaagtaatttccttgaagaatgcccagcggctacttgaggaagaggtg 99327 Query: 315 tctcggcatgtggaggaaaagaaggcacttcaacatgagctttcacacatanagaatgac 374 ||||||||||||||||||||||||| ||||| |||||||||| || | || ||||| Sbjct: 99328 tctcggcatgtggaggaaaagaaggtgcttcagtatgagctttcccagctcaaggatgac 99387 Query: 375 agaggtgacgtcgagaggaagcacttctcaatcaaggagcaaatacaagcggttaatttc 434 | |||||| ||||||||| || || || |||||||| |||||||| | ||| |||||| Sbjct: 99388 aagggtgactccgagaggaaacatttttcgatcaaggaacaaatacaggtggtgaatttc 99447 Query: 435 aa 436 || Sbjct: 99448 aa 99449
>ref|XM_468999.1| Oryza sativa (japonica cultivar-group), mRNA Length = 4836 Score = 69.9 bits (35), Expect = 7e-09 Identities = 92/111 (82%) Strand = Plus / Plus Query: 247 tgataattcgtctgcaggatgagatcatatccttgaagaatgcacaacggaaacttgagg 306 |||||||||| |||||||| ||||| || | ||||||||||||| |||| ||| |||| Sbjct: 1007 tgataattcgcctgcaggacgagataattacgatgaagaatgcacagcggagactcgagg 1066 Query: 307 aggaggtgtctcggcatgtggaggaaaagaaggcacttcaacatgagcttt 357 | || || | |||||||| || ||||||||| |||||||| ||||||||| Sbjct: 1067 aagatgtttgccggcatgttgatgaaaagaagacacttcaaaatgagcttt 1117
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 69.9 bits (35), Expect = 7e-09 Identities = 92/111 (82%) Strand = Plus / Minus Query: 247 tgataattcgtctgcaggatgagatcatatccttgaagaatgcacaacggaaacttgagg 306 |||||||||| |||||||| ||||| || | ||||||||||||| |||| ||| |||| Sbjct: 24318453 tgataattcgcctgcaggacgagataattacgatgaagaatgcacagcggagactcgagg 24318394 Query: 307 aggaggtgtctcggcatgtggaggaaaagaaggcacttcaacatgagcttt 357 | || || | |||||||| || ||||||||| |||||||| ||||||||| Sbjct: 24318393 aagatgtttgccggcatgttgatgaaaagaagacacttcaaaatgagcttt 24318343
>gb|AC120505.7| Oryza sativa chromosome 3 BAC OSJNBa0066H15 genomic sequence, complete sequence Length = 171664 Score = 69.9 bits (35), Expect = 7e-09 Identities = 92/111 (82%) Strand = Plus / Plus Query: 247 tgataattcgtctgcaggatgagatcatatccttgaagaatgcacaacggaaacttgagg 306 |||||||||| |||||||| ||||| || | ||||||||||||| |||| ||| |||| Sbjct: 62171 tgataattcgcctgcaggacgagataattacgatgaagaatgcacagcggagactcgagg 62230 Query: 307 aggaggtgtctcggcatgtggaggaaaagaaggcacttcaacatgagcttt 357 | || || | |||||||| || ||||||||| |||||||| ||||||||| Sbjct: 62231 aagatgtttgccggcatgttgatgaaaagaagacacttcaaaatgagcttt 62281
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 69.9 bits (35), Expect = 7e-09 Identities = 92/111 (82%) Strand = Plus / Minus Query: 247 tgataattcgtctgcaggatgagatcatatccttgaagaatgcacaacggaaacttgagg 306 |||||||||| |||||||| ||||| || | ||||||||||||| |||| ||| |||| Sbjct: 24235922 tgataattcgcctgcaggacgagataattacgatgaagaatgcacagcggagactcgagg 24235863 Query: 307 aggaggtgtctcggcatgtggaggaaaagaaggcacttcaacatgagcttt 357 | || || | |||||||| || ||||||||| |||||||| ||||||||| Sbjct: 24235862 aagatgtttgccggcatgttgatgaaaagaagacacttcaaaatgagcttt 24235812
>gb|U40959.1| Caenorhabditis elegans cosmid B0310, complete sequence Length = 39130 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 319 ggcatgtggaggaaaagaagg 339 ||||||||||||||||||||| Sbjct: 34141 ggcatgtggaggaaaagaagg 34121
>ref|NM_075711.2| Caenorhabditis elegans UDP-GlucuronosylTransferase family member (ugt-46) (ugt-46) mRNA, complete cds Length = 1765 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 319 ggcatgtggaggaaaagaagg 339 ||||||||||||||||||||| Sbjct: 1594 ggcatgtggaggaaaagaagg 1614
>gb|AC121292.9| Mus musculus chromosome 1, clone RP23-172B15, complete sequence Length = 193192 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 334 agaaggcacttcaacatgag 353 |||||||||||||||||||| Sbjct: 174675 agaaggcacttcaacatgag 174694
>ref|XM_958580.1| Neurospora crassa OR74A hypothetical protein ( kinesin-like protein Kif21a related protein [imported] - Neurospora crassa OR74A ) (NCU06832.1) partial mRNA Length = 5268 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 30 cagctcaagagcatgcaagc 49 |||||||||||||||||||| Sbjct: 4026 cagctcaagagcatgcaagc 4007
>ref|XM_327117.1| Neurospora crassa OR74A hypothetical protein ( kinesin-like protein Kif21a related protein [imported] - Neurospora crassa OR74A ) (NCU06832.1) partial mRNA Length = 5268 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 30 cagctcaagagcatgcaagc 49 |||||||||||||||||||| Sbjct: 4026 cagctcaagagcatgcaagc 4007
>emb|AL669993.1|NCB23D6 Neurospora crassa DNA linkage group II BAC clone B23D6 Length = 65197 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 cagctcaagagcatgcaagc 49 |||||||||||||||||||| Sbjct: 39624 cagctcaagagcatgcaagc 39643
>emb|AL356173.2|NCB14D6 Neurospora crassa DNA linkage group II BAC contig B14D6 Length = 199386 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 cagctcaagagcatgcaagc 49 |||||||||||||||||||| Sbjct: 3898 cagctcaagagcatgcaagc 3917
>gb|AC016839.12| Homo sapiens chromosome 18, clone RP11-399L5, complete sequence Length = 152689 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 73 agaagcagttggcacaagta 92 |||||||||||||||||||| Sbjct: 48700 agaagcagttggcacaagta 48719
>gb|AC090772.9| Homo sapiens chromosome 18, clone RP11-799B12, complete sequence Length = 189763 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 21 caagaggagcagctcaagagcatg 44 ||||||||||||||||| |||||| Sbjct: 142506 caagaggagcagctcaaaagcatg 142529
>gb|AC024323.4|AC024323 Homo sapiens, clone RP11-28O13, complete sequence Length = 137242 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 caggatgagatcatatcctt 280 |||||||||||||||||||| Sbjct: 5900 caggatgagatcatatcctt 5881
>gb|AC025674.10| Homo sapiens chromosome 8, clone RP11-513O17, complete sequence Length = 152451 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 155 tgaagcaagcaagcttatgc 174 |||||||||||||||||||| Sbjct: 38904 tgaagcaagcaagcttatgc 38885
>gb|AC068547.7| Homo sapiens BAC clone RP11-458J7 from 2, complete sequence Length = 185555 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 265 atgagatcatatccttgaag 284 |||||||||||||||||||| Sbjct: 46244 atgagatcatatccttgaag 46225
>gb|AC104946.4| Homo sapiens chromosome 8, clone RP11-946L20, complete sequence Length = 200292 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 caggatgagatcatatcctt 280 |||||||||||||||||||| Sbjct: 183686 caggatgagatcatatcctt 183667
>gb|AC009294.8|AC009294 Homo sapiens chromosome 11, clone 579_H_17, complete sequence Length = 211316 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 120 gaaaagcacggtgaaacaagcaag 143 ||||||||| |||||||||||||| Sbjct: 49726 gaaaagcactgtgaaacaagcaag 49703
>emb|CR391915.9| Zebrafish DNA sequence from clone CH211-130O18 in linkage group 19, complete sequence Length = 77634 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 215 actggatgatcaaaaccact 234 |||||||||||||||||||| Sbjct: 65291 actggatgatcaaaaccact 65310
>dbj|AP002963.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-97I14, complete sequence Length = 183204 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 120 gaaaagcacggtgaaacaagcaag 143 ||||||||| |||||||||||||| Sbjct: 64224 gaaaagcactgtgaaacaagcaag 64247
>dbj|AP005627.1| Homo sapiens genomic DNA, chromosome 8q23, clone:KB229B8, complete sequence Length = 95577 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 caggatgagatcatatcctt 280 |||||||||||||||||||| Sbjct: 70116 caggatgagatcatatcctt 70135
>gb|AC167020.3| Mus musculus BAC clone RP23-201I6 from chromosome 1, complete sequence Length = 209249 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 334 agaaggcacttcaacatgag 353 |||||||||||||||||||| Sbjct: 155511 agaaggcacttcaacatgag 155492 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,973,330 Number of Sequences: 3902068 Number of extensions: 3973330 Number of successful extensions: 68123 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 26 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 68015 Number of HSP's gapped (non-prelim): 96 length of query: 436 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 414 effective length of database: 17,147,199,772 effective search space: 7098940705608 effective search space used: 7098940705608 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
