ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl20e06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SYV_ARATH (P93736) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--t... 45 1e-04
2YNB2_SCHPO (Q9USS8) Hypothetical protein C4.02c in chromosome II 30 3.4

>SYV_ARATH (P93736) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)|
           (ValRS)
          Length = 1108

 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 18/27 (66%), Positives = 23/27 (85%)
 Frame = +3

Query: 357 ADDENPEDFIDPETPSGQKKSLAPQMA 437
           A +ENPEDF+DPETP G++K L+ QMA
Sbjct: 111 ASEENPEDFVDPETPLGERKRLSSQMA 137



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>YNB2_SCHPO (Q9USS8) Hypothetical protein C4.02c in chromosome II|
          Length = 456

 Score = 29.6 bits (65), Expect = 3.4
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -1

Query: 123 EIGWYGWSRRRGRAPALAWTLRSTARAECP*QVRVLRNFLS 1
           EIG  G  + +  AP+  W LR+  R EC   +R  R ++S
Sbjct: 392 EIGDIGAQQWKTLAPSERWILRTNIRKECTYDIRYKRPYVS 432


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,375,223
Number of Sequences: 219361
Number of extensions: 249014
Number of successful extensions: 805
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2570413340
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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