ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl20d12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK100383.1| Oryza sativa (japonica cultivar-group) cDNA clon... 381 e-102
2ref|XM_463457.1| Oryza sativa (japonica cultivar-group), predic... 224 2e-55
3ref|XM_463460.1| Oryza sativa (japonica cultivar-group), predic... 168 9e-39
4ref|XM_478770.1| Oryza sativa (japonica cultivar-group), mRNA 165 1e-37
5dbj|AK100076.1| Oryza sativa (japonica cultivar-group) cDNA clon... 165 1e-37
6dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 159 9e-36
7dbj|AP003224.3| Oryza sativa (japonica cultivar-group) genomic D... 159 9e-36
8ref|XM_478769.1| Oryza sativa (japonica cultivar-group), mRNA 133 5e-28
9dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 98 3e-17
10dbj|AP003981.3| Oryza sativa (japonica cultivar-group) genomic D... 98 3e-17
11dbj|AP005908.3| Oryza sativa (japonica cultivar-group) genomic D... 90 7e-15
12gb|AY022725.1| Oryza sativa microsatellite MRG5050 containing (C... 74 4e-10
13gb|AY035059.1| Arabidopsis thaliana At3g57470 mRNA sequence 70 6e-09
14emb|AL133248.1|ATT8H10 Arabidopsis thaliana DNA chromosome 3, BA... 66 1e-07
15ref|NM_115607.2| Arabidopsis thaliana metalloendopeptidase AT3G5... 64 4e-07
16emb|BX823565.1|CNS0A4WF Arabidopsis thaliana Full-length cDNA Co... 64 4e-07
17gb|AC084091.5| Homo sapiens chromosome 8, clone CTD-2532E22, com... 46 0.094
18gb|AC018422.9| Homo sapiens, clone RP11-19G4, complete sequence 46 0.094
19gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete ... 42 1.5
20ref|NM_129743.2| Arabidopsis thaliana metalloendopeptidase AT2G4... 40 5.8
21gb|CP000080.1| Leishmania major strain Friedlin chromosome 29, c... 40 5.8
22gb|AC116460.10| Mus musculus chromosome 10, clone RP23-244G12, c... 40 5.8
23ref|XM_842838.1| Leishmania major strain Friedlin helicase (LMJ_... 40 5.8
24gb|AC113597.12| Mus musculus chromosome 1, clone RP23-375F6, com... 40 5.8
25emb|AL023513.1|HS268D13 Human DNA sequence from clone RP1-268D13... 40 5.8
26emb|BX571857.1| Staphylococcus aureus strain MSSA476, complete g... 40 5.8
27gb|AC069544.9| Homo sapiens chromosome 10 clone RP11-398C13, com... 40 5.8
28dbj|BA000017.4| Staphylococcus aureus subsp. aureus Mu50 DNA, co... 40 5.8
29gb|CP000046.1| Staphylococcus aureus subsp. aureus COL, complete... 40 5.8
30gb|CP000253.1| Staphylococcus aureus subsp. aureus NCTC 8325, co... 40 5.8
31gb|CP000255.1| Staphylococcus aureus subsp. aureus USA300, compl... 40 5.8
32dbj|BA000033.2| Staphylococcus aureus subsp. aureus MW2 DNA, com... 40 5.8
33dbj|BA000018.3| Staphylococcus aureus subsp. aureus N315 genomic... 40 5.8
34dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 5.8
35gb|AC153531.5| Mus musculus 10 BAC RP23-22C3 (Roswell Park Cance... 40 5.8
36emb|BX571856.1| Staphylococcus aureus subsp. aureus strain MRSA2... 40 5.8
37gb|AE015451.1| Pseudomonas putida KT2440 complete genome 40 5.8
38gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 5.8
39gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome 40 5.8
40emb|AJ938182.1| Staphylococcus aureus RF122 complete genome 40 5.8 
>dbj|AK100383.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023085G23, full
           insert sequence
          Length = 3262

 Score =  381 bits (192), Expect = e-102
 Identities = 280/308 (90%), Gaps = 1/308 (0%)
 Strand = Plus / Plus

                                                                       
Query: 126 gcaatgtggagttcgtccgcgcgcgcagcgacaagcgggagtaccgccgcctgctgctcc 185
           |||||||||||||| |||||||||| |||||||||||||||||||||||  || ||||||
Sbjct: 158 gcaatgtggagttcatccgcgcgcggagcgacaagcgggagtaccgccgggtggtgctcc 217

                                                                       
Query: 186 ccaacgcgctcgagtgcctcctcatcagcgacgccgacaccgacaaggcggcggcgtgta 245
           |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct: 218 ccaacgcgctcgagtgcctcctcatcagcgactccgaaaccgacaaggcggcggcgtgta 277

                                                                       
Query: 246 tggaggtcggcgtgggctccttcagcgacccggaggggctcgagggcctcgcgcacttcc 305
           ||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct: 278 tggaggttggcgtgggctcgttcagcgacccggaggggctcgagggcctcgcccacttcc 337

                                                                       
Query: 306 tcgagcatatgctgttttatgccagtgaaaaataccctggagaacaagattatacaaaat 365
           ||||||||||||| |||||||||||||| ||||||||||| ||||||||||| || || |
Sbjct: 338 tcgagcatatgctattttatgccagtgagaaataccctggggaacaagattacacgaagt 397

                                                                       
Query: 366 atatctctgagcatggtggttctt-ccatgcctttacatcctccgagacaacaaattact 424
           ||||| | ||||||||||| |||| | ||||||  |||   || ||||||||||||| ||
Sbjct: 398 atatcacagagcatggtggctcttgcaatgcctacacaagttcggagacaacaaatttct 457

                   
Query: 425 attttgat 432
           ||||||||
Sbjct: 458 attttgat 465
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>ref|XM_463457.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2841

 Score =  224 bits (113), Expect = 2e-55
 Identities = 180/201 (89%), Gaps = 1/201 (0%)
 Strand = Plus / Plus

                                                                       
Query: 233 gcggcggcgtgtatggaggtcggcgtgggctccttcagcgacccggaggggctcgagggc 292
           |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct: 202 gcggcggcgtgtatggaggttggcgtgggctcgttcagcgacccggaggggctcgagggc 261

                                                                       
Query: 293 ctcgcgcacttcctcgagcatatgctgttttatgccagtgaaaaataccctggagaacaa 352
           ||||| |||||||||||||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct: 262 ctcgcccacttcctcgagcatatgctattttatgccagtgagaaataccctggggaacaa 321

                                                                       
Query: 353 gattatacaaaatatatctctgagcatggtggttctt-ccatgcctttacatcctccgag 411
           ||||| || || |||||| | ||||||||||| |||| | ||||||  |||   || |||
Sbjct: 322 gattacacgaagtatatcacagagcatggtggctcttgcaatgcctacacaagttcggag 381

                                
Query: 412 acaacaaattactattttgat 432
           |||||||||| ||||||||||
Sbjct: 382 acaacaaatttctattttgat 402



 Score =  159 bits (80), Expect = 9e-36
 Identities = 101/108 (93%)
 Strand = Plus / Plus

                                                                       
Query: 126 gcaatgtggagttcgtccgcgcgcgcagcgacaagcgggagtaccgccgcctgctgctcc 185
           |||||||||||||| |||||||||| |||||||||||||||||||||||  || ||||||
Sbjct: 35  gcaatgtggagttcatccgcgcgcggagcgacaagcgggagtaccgccgggtggtgctcc 94

                                                           
Query: 186 ccaacgcgctcgagtgcctcctcatcagcgacgccgacaccgacaagg 233
           |||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct: 95  ccaacgcgctcgagtgcctcctcatcagcgactccgaaaccgacaagg 142
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>ref|XM_463460.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2838

 Score =  168 bits (85), Expect = 9e-39
 Identities = 106/113 (93%)
 Strand = Plus / Plus

                                                                       
Query: 233 gcggcggcgtgtatggaggtcggcgtgggctccttcagcgacccggaggggctcgagggc 292
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 190 gcggcggcgtgtatggaggtcggcgtgggctcgttcagcgacccggaggggctcgagggc 249

                                                                
Query: 293 ctcgcgcacttcctcgagcatatgctgttttatgccagtgaaaaataccctgg 345
           ||||| ||||| ||||| || ||||| |||||||||||||| |||||||||||
Sbjct: 250 ctcgcccactttctcgaacacatgctattttatgccagtgagaaataccctgg 302



 Score =  157 bits (79), Expect = 4e-35
 Identities = 100/107 (93%)
 Strand = Plus / Plus

                                                                       
Query: 126 gcaatgtggagttcgtccgcgcgcgcagcgacaagcgggagtaccgccgcctgctgctcc 185
           |||||||||||||| ||||| ||||||||||||||||||||||||||||  || ||||||
Sbjct: 23  gcaatgtggagttcatccgctcgcgcagcgacaagcgggagtaccgccgggtggtgctcc 82

                                                          
Query: 186 ccaacgcgctcgagtgcctcctcatcagcgacgccgacaccgacaag 232
           |||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 83  ccaatgcgctcgagtgcctcctcatcagcgactccgacaccgacaag 129
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>ref|XM_478770.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3199

 Score =  165 bits (83), Expect = 1e-37
 Identities = 164/191 (85%)
 Strand = Plus / Plus

                                                                       
Query: 149 cgcagcgacaagcgggagtaccgccgcctgctgctccccaacgcgctcgagtgcctcctc 208
           |||| ||||||||| | |||||||||| |  ||||||||||||  |||||||||||||||
Sbjct: 244 cgcaacgacaagcgcgggtaccgccgcgtcgtgctccccaacgacctcgagtgcctcctc 303

                                                                       
Query: 209 atcagcgacgccgacaccgacaaggcggcggcgtgtatggaggtcggcgtgggctccttc 268
            |||||||| ||||||||||||||||||||||||  ||| | |||   ||||||| ||||
Sbjct: 304 gtcagcgaccccgacaccgacaaggcggcggcgtcgatgaacgtctcggtgggctacttc 363

                                                                       
Query: 269 agcgacccggaggggctcgagggcctcgcgcacttcctcgagcatatgctgttttatgcc 328
            |||| || |||||||||||||| |||||||||||||| ||||||||||| || ||||| 
Sbjct: 364 tgcgatcccgaggggctcgaggggctcgcgcacttccttgagcatatgcttttctatgct 423

                      
Query: 329 agtgaaaaata 339
           ||||| |||||
Sbjct: 424 agtgagaaata 434
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>dbj|AK100076.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023001F09, full
           insert sequence
          Length = 3200

 Score =  165 bits (83), Expect = 1e-37
 Identities = 164/191 (85%)
 Strand = Plus / Plus

                                                                       
Query: 149 cgcagcgacaagcgggagtaccgccgcctgctgctccccaacgcgctcgagtgcctcctc 208
           |||| ||||||||| | |||||||||| |  ||||||||||||  |||||||||||||||
Sbjct: 244 cgcaacgacaagcgcgggtaccgccgcgtcgtgctccccaacgacctcgagtgcctcctc 303

                                                                       
Query: 209 atcagcgacgccgacaccgacaaggcggcggcgtgtatggaggtcggcgtgggctccttc 268
            |||||||| ||||||||||||||||||||||||  ||| | |||   ||||||| ||||
Sbjct: 304 gtcagcgaccccgacaccgacaaggcggcggcgtcgatgaacgtctcggtgggctacttc 363

                                                                       
Query: 269 agcgacccggaggggctcgagggcctcgcgcacttcctcgagcatatgctgttttatgcc 328
            |||| || |||||||||||||| |||||||||||||| ||||||||||| || ||||| 
Sbjct: 364 tgcgatcccgaggggctcgaggggctcgcgcacttccttgagcatatgcttttctatgct 423

                      
Query: 329 agtgaaaaata 339
           ||||| |||||
Sbjct: 424 agtgagaaata 434
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  159 bits (80), Expect = 9e-36
 Identities = 101/108 (93%)
 Strand = Plus / Plus

                                                                            
Query: 126      gcaatgtggagttcgtccgcgcgcgcagcgacaagcgggagtaccgccgcctgctgctcc 185
                |||||||||||||| ||||| ||||||||||||||||||||||||||||  || ||||||
Sbjct: 32978328 gcaatgtggagttcatccgctcgcgcagcgacaagcgggagtaccgccgggtggtgctcc 32978387

                                                                
Query: 186      ccaacgcgctcgagtgcctcctcatcagcgacgccgacaccgacaagg 233
                |||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 32978388 ccaatgcgctcgagtgcctcctcatcagcgactccgacaccgacaagg 32978435



 Score =  159 bits (80), Expect = 9e-36
 Identities = 101/108 (93%)
 Strand = Plus / Plus

                                                                            
Query: 126      gcaatgtggagttcgtccgcgcgcgcagcgacaagcgggagtaccgccgcctgctgctcc 185
                |||||||||||||| |||||||||| |||||||||||||||||||||||  || ||||||
Sbjct: 32958783 gcaatgtggagttcatccgcgcgcggagcgacaagcgggagtaccgccgggtggtgctcc 32958842

                                                                
Query: 186      ccaacgcgctcgagtgcctcctcatcagcgacgccgacaccgacaagg 233
                |||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct: 32958843 ccaacgcgctcgagtgcctcctcatcagcgactccgaaaccgacaagg 32958890



 Score =  131 bits (66), Expect = 2e-27
 Identities = 75/78 (96%)
 Strand = Plus / Plus

                                                                            
Query: 231      aggcggcggcgtgtatggaggtcggcgtgggctccttcagcgacccggaggggctcgagg 290
                |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 32978568 aggcggcggcgtgtatggaggtcggcgtgggctcgttcagcgacccggaggggctcgagg 32978627

                                  
Query: 291      gcctcgcgcacttcctcg 308
                ||||||| ||||| ||||
Sbjct: 32978628 gcctcgcccactttctcg 32978645



 Score =  131 bits (66), Expect = 2e-27
 Identities = 75/78 (96%)
 Strand = Plus / Plus

                                                                            
Query: 231      aggcggcggcgtgtatggaggtcggcgtgggctccttcagcgacccggaggggctcgagg 290
                |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 32959022 aggcggcggcgtgtatggaggttggcgtgggctcgttcagcgacccggaggggctcgagg 32959081

                                  
Query: 291      gcctcgcgcacttcctcg 308
                ||||||| ||||||||||
Sbjct: 32959082 gcctcgcccacttcctcg 32959099



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 57/63 (90%)
 Strand = Plus / Plus

                                                                            
Query: 308      gagcatatgctgttttatgccagtgaaaaataccctggagaacaagattatacaaaatat 367
                ||||||||||| |||||||||||||| ||||||||||| ||||||||||| || || |||
Sbjct: 32960652 gagcatatgctattttatgccagtgagaaataccctggggaacaagattacacgaagtat 32960711

                   
Query: 368      atc 370
                |||
Sbjct: 32960712 atc 32960714



 Score = 48.1 bits (24), Expect = 0.024
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                                
Query: 314      atgctgttttatgccagtgaaaaataccctgg 345
                ||||| |||||||||||||| |||||||||||
Sbjct: 32979329 atgctattttatgccagtgagaaataccctgg 32979360



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 409      gagacaacaaattactattttgat 432
                ||||||||||||| ||||||||||
Sbjct: 32961303 gagacaacaaatttctattttgat 32961326
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>dbj|AP003224.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0010B10
          Length = 155263

 Score =  159 bits (80), Expect = 9e-36
 Identities = 101/108 (93%)
 Strand = Plus / Plus

                                                                         
Query: 126   gcaatgtggagttcgtccgcgcgcgcagcgacaagcgggagtaccgccgcctgctgctcc 185
             |||||||||||||| ||||| ||||||||||||||||||||||||||||  || ||||||
Sbjct: 44556 gcaatgtggagttcatccgctcgcgcagcgacaagcgggagtaccgccgggtggtgctcc 44615

                                                             
Query: 186   ccaacgcgctcgagtgcctcctcatcagcgacgccgacaccgacaagg 233
             |||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 44616 ccaatgcgctcgagtgcctcctcatcagcgactccgacaccgacaagg 44663



 Score =  159 bits (80), Expect = 9e-36
 Identities = 101/108 (93%)
 Strand = Plus / Plus

                                                                         
Query: 126   gcaatgtggagttcgtccgcgcgcgcagcgacaagcgggagtaccgccgcctgctgctcc 185
             |||||||||||||| |||||||||| |||||||||||||||||||||||  || ||||||
Sbjct: 25011 gcaatgtggagttcatccgcgcgcggagcgacaagcgggagtaccgccgggtggtgctcc 25070

                                                             
Query: 186   ccaacgcgctcgagtgcctcctcatcagcgacgccgacaccgacaagg 233
             |||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct: 25071 ccaacgcgctcgagtgcctcctcatcagcgactccgaaaccgacaagg 25118



 Score =  131 bits (66), Expect = 2e-27
 Identities = 75/78 (96%)
 Strand = Plus / Plus

                                                                         
Query: 231   aggcggcggcgtgtatggaggtcggcgtgggctccttcagcgacccggaggggctcgagg 290
             |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 44796 aggcggcggcgtgtatggaggtcggcgtgggctcgttcagcgacccggaggggctcgagg 44855

                               
Query: 291   gcctcgcgcacttcctcg 308
             ||||||| ||||| ||||
Sbjct: 44856 gcctcgcccactttctcg 44873



 Score =  131 bits (66), Expect = 2e-27
 Identities = 75/78 (96%)
 Strand = Plus / Plus

                                                                         
Query: 231   aggcggcggcgtgtatggaggtcggcgtgggctccttcagcgacccggaggggctcgagg 290
             |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 25250 aggcggcggcgtgtatggaggttggcgtgggctcgttcagcgacccggaggggctcgagg 25309

                               
Query: 291   gcctcgcgcacttcctcg 308
             ||||||| ||||||||||
Sbjct: 25310 gcctcgcccacttcctcg 25327



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 57/63 (90%)
 Strand = Plus / Plus

                                                                         
Query: 308   gagcatatgctgttttatgccagtgaaaaataccctggagaacaagattatacaaaatat 367
             ||||||||||| |||||||||||||| ||||||||||| ||||||||||| || || |||
Sbjct: 26880 gagcatatgctattttatgccagtgagaaataccctggggaacaagattacacgaagtat 26939

                
Query: 368   atc 370
             |||
Sbjct: 26940 atc 26942



 Score = 48.1 bits (24), Expect = 0.024
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                             
Query: 314   atgctgttttatgccagtgaaaaataccctgg 345
             ||||| |||||||||||||| |||||||||||
Sbjct: 45557 atgctattttatgccagtgagaaataccctgg 45588



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 409   gagacaacaaattactattttgat 432
             ||||||||||||| ||||||||||
Sbjct: 27531 gagacaacaaatttctattttgat 27554
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>ref|XM_478769.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2997

 Score =  133 bits (67), Expect = 5e-28
 Identities = 196/239 (82%)
 Strand = Plus / Plus

                                                                       
Query: 149 cgcagcgacaagcgggagtaccgccgcctgctgctccccaacgcgctcgagtgcctcctc 208
           |||| ||||||||| | |||||||||| |  ||||||||||||| |||||||||||||||
Sbjct: 130 cgcaacgacaagcgcgggtaccgccgcgtcgtgctccccaacgccctcgagtgcctcctc 189

                                                                       
Query: 209 atcagcgacgccgacaccgacaaggcggcggcgtgtatggaggtcggcgtgggctccttc 268
            |||||||| ||||||||||||||||||||||||  ||| | |||   ||||||| ||||
Sbjct: 190 gtcagcgaccccgacaccgacaaggcggcggcgtcgatgaatgtctcggtgggctacttc 249

                                                                       
Query: 269 agcgacccggaggggctcgagggcctcgcgcacttcctcgagcatatgctgttttatgcc 328
            |||| || ||| |||||   ||||| || || ||||| ||||||||||| || ||||| 
Sbjct: 250 tgcgatcccgagaggctccctggccttgcacatttccttgagcatatgcttttctatgct 309

                                                                      
Query: 329 agtgaaaaataccctggagaacaagattatacaaaatatatctctgagcatggtggttc 387
           || || ||||||||||  ||| | |||||  |||| |||||  | ||||||||||||||
Sbjct: 310 agcgagaaataccctgtggaagacgattactcaaagtatattgcagagcatggtggttc 368
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 76/85 (89%)
 Strand = Plus / Minus

                                                                            
Query: 149      cgcagcgacaagcgggagtaccgccgcctgctgctccccaacgcgctcgagtgcctcctc 208
                |||| ||||||||| | |||||||||| |  ||||||||||||| |||||||||||||||
Sbjct: 22901086 cgcaacgacaagcgcgggtaccgccgcgtcgtgctccccaacgccctcgagtgcctcctc 22901027

                                         
Query: 209      atcagcgacgccgacaccgacaagg 233
                 |||||||| |||||||||||||||
Sbjct: 22901026 gtcagcgaccccgacaccgacaagg 22901002



 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 75/85 (88%)
 Strand = Plus / Minus

                                                                            
Query: 149      cgcagcgacaagcgggagtaccgccgcctgctgctccccaacgcgctcgagtgcctcctc 208
                |||| ||||||||| | |||||||||| |  ||||||||||||| |||||||||||| ||
Sbjct: 22937406 cgcaacgacaagcgcgggtaccgccgcgtcgtgctccccaacgccctcgagtgcctcgtc 22937347

                                         
Query: 209      atcagcgacgccgacaccgacaagg 233
                ||||||||| |||||||||| ||||
Sbjct: 22937346 atcagcgaccccgacaccgataagg 22937322



 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 75/85 (88%)
 Strand = Plus / Minus

                                                                            
Query: 149      cgcagcgacaagcgggagtaccgccgcctgctgctccccaacgcgctcgagtgcctcctc 208
                |||| ||||||||| | |||||||||| |  ||||||||||||  |||||||||||||||
Sbjct: 22918850 cgcaacgacaagcgcgggtaccgccgcgtcgtgctccccaacgacctcgagtgcctcctc 22918791

                                         
Query: 209      atcagcgacgccgacaccgacaagg 233
                 |||||||| |||||||||||||||
Sbjct: 22918790 gtcagcgaccccgacaccgacaagg 22918766



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                                  
Query: 257      gtgggctccttcagcgacccggaggggctcgagggcctcgcgcacttcct 306
                ||||||| |||| |||| || |||||||||||||| ||||||||||||||
Sbjct: 22918623 gtgggctacttctgcgatcccgaggggctcgaggggctcgcgcacttcct 22918574
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>dbj|AP003981.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1019_E02
          Length = 121607

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 76/85 (89%)
 Strand = Plus / Minus

                                                                         
Query: 149   cgcagcgacaagcgggagtaccgccgcctgctgctccccaacgcgctcgagtgcctcctc 208
             |||| ||||||||| | |||||||||| |  ||||||||||||| |||||||||||||||
Sbjct: 94353 cgcaacgacaagcgcgggtaccgccgcgtcgtgctccccaacgccctcgagtgcctcctc 94294

                                      
Query: 209   atcagcgacgccgacaccgacaagg 233
              |||||||| |||||||||||||||
Sbjct: 94293 gtcagcgaccccgacaccgacaagg 94269



 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 75/85 (88%)
 Strand = Plus / Minus

                                                                          
Query: 149    cgcagcgacaagcgggagtaccgccgcctgctgctccccaacgcgctcgagtgcctcctc 208
              |||| ||||||||| | |||||||||| |  ||||||||||||  |||||||||||||||
Sbjct: 112117 cgcaacgacaagcgcgggtaccgccgcgtcgtgctccccaacgacctcgagtgcctcctc 112058

                                       
Query: 209    atcagcgacgccgacaccgacaagg 233
               |||||||| |||||||||||||||
Sbjct: 112057 gtcagcgaccccgacaccgacaagg 112033



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                                
Query: 257    gtgggctccttcagcgacccggaggggctcgagggcctcgcgcacttcct 306
              ||||||| |||| |||| || |||||||||||||| ||||||||||||||
Sbjct: 111890 gtgggctacttctgcgatcccgaggggctcgaggggctcgcgcacttcct 111841
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>dbj|AP005908.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1121_A05
          Length = 172668

 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 75/85 (88%)
 Strand = Plus / Minus

                                                                         
Query: 149   cgcagcgacaagcgggagtaccgccgcctgctgctccccaacgcgctcgagtgcctcctc 208
             |||| ||||||||| | |||||||||| |  ||||||||||||| |||||||||||| ||
Sbjct: 12620 cgcaacgacaagcgcgggtaccgccgcgtcgtgctccccaacgccctcgagtgcctcgtc 12561

                                      
Query: 209   atcagcgacgccgacaccgacaagg 233
             ||||||||| |||||||||| ||||
Sbjct: 12560 atcagcgaccccgacaccgataagg 12536
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>gb|AY022725.1| Oryza sativa microsatellite MRG5050 containing (CCG)X10, closest to
           marker R2561, genomic sequence
          Length = 230

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 67/77 (87%)
 Strand = Plus / Minus

                                                                       
Query: 149 cgcagcgacaagcgggagtaccgccgcctgctgctccccaacgcgctcgagtgcctcctc 208
           |||| ||||||||| | |||||||||| |  ||||||||||||  |||||||||||||||
Sbjct: 77  cgcaacgacaagcgcgggtaccgccgcgtcgtgctccccaacgacctcgagtgcctcctc 18

                            
Query: 209 atcagcgacgccgacac 225
            |||||||| |||||||
Sbjct: 17  gtcagcgaccccgacac 1
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>gb|AY035059.1| Arabidopsis thaliana At3g57470 mRNA sequence
          Length = 3270

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 41/43 (95%)
 Strand = Plus / Plus

                                                      
Query: 302 ttcctcgagcatatgctgttttatgccagtgaaaaataccctg 344
           ||||| |||||||||||||||||||| ||||||||||||||||
Sbjct: 341 ttccttgagcatatgctgttttatgcaagtgaaaaataccctg 383
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>emb|AL133248.1|ATT8H10 Arabidopsis thaliana DNA chromosome 3, BAC clone T8H10
          Length = 87503

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 36/37 (97%)
 Strand = Plus / Minus

                                                  
Query: 308   gagcatatgctgttttatgccagtgaaaaataccctg 344
             |||||||||||||||||||| ||||||||||||||||
Sbjct: 29242 gagcatatgctgttttatgcaagtgaaaaataccctg 29206
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>ref|NM_115607.2| Arabidopsis thaliana metalloendopeptidase AT3G57470 mRNA, complete
           cds
          Length = 3179

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 35/36 (97%)
 Strand = Plus / Plus

                                               
Query: 309 agcatatgctgttttatgccagtgaaaaataccctg 344
           ||||||||||||||||||| ||||||||||||||||
Sbjct: 354 agcatatgctgttttatgcaagtgaaaaataccctg 389
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>emb|BX823565.1|CNS0A4WF Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS51ZC05 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 3174

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 35/36 (97%)
 Strand = Plus / Plus

                                               
Query: 309 agcatatgctgttttatgccagtgaaaaataccctg 344
           ||||||||||||||||||| ||||||||||||||||
Sbjct: 357 agcatatgctgttttatgcaagtgaaaaataccctg 392
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>gb|AC084091.5| Homo sapiens chromosome 8, clone CTD-2532E22, complete sequence
          Length = 183486

 Score = 46.1 bits (23), Expect = 0.094
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 320   ttttatgccagtgaaaaataccctgga 346
             ||||||| |||||||||||||||||||
Sbjct: 14004 ttttatggcagtgaaaaataccctgga 14030
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>gb|AC018422.9| Homo sapiens, clone RP11-19G4, complete sequence
          Length = 157508

 Score = 46.1 bits (23), Expect = 0.094
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 320    ttttatgccagtgaaaaataccctgga 346
              ||||||| |||||||||||||||||||
Sbjct: 145314 ttttatggcagtgaaaaataccctgga 145340
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>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome
          Length = 2584158

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 297     cgcacttcctcgagcatatgctgtt 321
               ||||||||||||||||| |||||||
Sbjct: 1681886 cgcacttcctcgagcatctgctgtt 1681862
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>ref|NM_129743.2| Arabidopsis thaliana metalloendopeptidase AT2G41790 mRNA, complete
           cds
          Length = 3072

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 302 ttcctcgagcatatgctgttttatgccagtga 333
           ||||| ||||||||||| |||||||| |||||
Sbjct: 208 ttccttgagcatatgctattttatgcaagtga 239
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>gb|CP000080.1| Leishmania major strain Friedlin chromosome 29, complete sequence
          Length = 1212674

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 290     ggcctcgcgcacttcctcga 309
               ||||||||||||||||||||
Sbjct: 1145676 ggcctcgcgcacttcctcga 1145657
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>gb|AC116460.10| Mus musculus chromosome 10, clone RP23-244G12, complete sequence
          Length = 203330

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 318  tgttttatgccagtgaaaaa 337
            ||||||||||||||||||||
Sbjct: 2740 tgttttatgccagtgaaaaa 2759
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>ref|XM_842838.1| Leishmania major strain Friedlin helicase (LMJ_0909) partial mRNA
          Length = 2862

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 290  ggcctcgcgcacttcctcga 309
            ||||||||||||||||||||
Sbjct: 2349 ggcctcgcgcacttcctcga 2330
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>gb|AC113597.12| Mus musculus chromosome 1, clone RP23-375F6, complete sequence
          Length = 224996

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 361    aaaatatatctctgagcatg 380
              ||||||||||||||||||||
Sbjct: 122921 aaaatatatctctgagcatg 122940
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>emb|AL023513.1|HS268D13 Human DNA sequence from clone RP1-268D13 on chromosome 22q11.21-12.2,
             complete sequence
          Length = 115863

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 315   tgctgttttatgccagtgaa 334
             ||||||||||||||||||||
Sbjct: 60912 tgctgttttatgccagtgaa 60893
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>emb|BX571857.1| Staphylococcus aureus strain MSSA476, complete genome
          Length = 2799802

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 409     gagacaacaaattactattttgat 432
               ||||||||||||||||| ||||||
Sbjct: 2361054 gagacaacaaattactaatttgat 2361077
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>gb|AC069544.9| Homo sapiens chromosome 10 clone RP11-398C13, complete sequence
          Length = 214866

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 356  tatacaaaatatatctctga 375
            ||||||||||||||||||||
Sbjct: 8167 tatacaaaatatatctctga 8148
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>dbj|BA000017.4| Staphylococcus aureus subsp. aureus Mu50 DNA, complete genome
          Length = 2878529

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 409     gagacaacaaattactattttgat 432
               ||||||||||||||||| ||||||
Sbjct: 2439235 gagacaacaaattactaatttgat 2439258
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>gb|CP000046.1| Staphylococcus aureus subsp. aureus COL, complete genome
          Length = 2809422

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 409     gagacaacaaattactattttgat 432
               ||||||||||||||||| ||||||
Sbjct: 2369092 gagacaacaaattactaatttgat 2369115
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>gb|CP000253.1| Staphylococcus aureus subsp. aureus NCTC 8325, complete genome
          Length = 2821361

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 409     gagacaacaaattactattttgat 432
               ||||||||||||||||| ||||||
Sbjct: 2379758 gagacaacaaattactaatttgat 2379781
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>gb|CP000255.1| Staphylococcus aureus subsp. aureus USA300, complete genome
          Length = 2872769

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 409     gagacaacaaattactattttgat 432
               ||||||||||||||||| ||||||
Sbjct: 2432959 gagacaacaaattactaatttgat 2432982
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>dbj|BA000033.2| Staphylococcus aureus subsp. aureus MW2 DNA, complete genome, strain:MW2
          Length = 2820462

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 409     gagacaacaaattactattttgat 432
               ||||||||||||||||| ||||||
Sbjct: 2381949 gagacaacaaattactaatttgat 2381972
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>dbj|BA000018.3| Staphylococcus aureus subsp. aureus N315 genomic DNA, complete genome
          Length = 2814816

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 409     gagacaacaaattactattttgat 432
               ||||||||||||||||| ||||||
Sbjct: 2369735 gagacaacaaattactaatttgat 2369758
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 293     ctcgcgcacttcctcgagca 312
               ||||||||||||||||||||
Sbjct: 8220558 ctcgcgcacttcctcgagca 8220577
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>gb|AC153531.5| Mus musculus 10 BAC RP23-22C3 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 186219

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 318   tgttttatgccagtgaaaaa 337
             ||||||||||||||||||||
Sbjct: 81055 tgttttatgccagtgaaaaa 81074
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>emb|BX571856.1| Staphylococcus aureus subsp. aureus strain MRSA252, complete genome
          Length = 2902619

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 409     gagacaacaaattactattttgat 432
               ||||||||||||||||| ||||||
Sbjct: 2468870 gagacaacaaattactaatttgat 2468893
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>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 164     gagtaccgccgcctgctgct 183
               ||||||||||||||||||||
Sbjct: 3721129 gagtaccgccgcctgctgct 3721148
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 164     gagtaccgccgcctgctgct 183
               ||||||||||||||||||||
Sbjct: 1356741 gagtaccgccgcctgctgct 1356760
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>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome
          Length = 7215267

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                   
Query: 287     gagggcctcgcgcacttcctcgagcatatgctgttt 322
               ||||| || ||||||||||| ||||| |||||||||
Sbjct: 5141980 gagggactggcgcacttcctggagcacatgctgttt 5142015
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>emb|AJ938182.1| Staphylococcus aureus RF122 complete genome
          Length = 2742531

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 409     gagacaacaaattactattttgat 432
               ||||||||||||||||| ||||||
Sbjct: 2321643 gagacaacaaattactaatttgat 2321666


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,939,142
Number of Sequences: 3902068
Number of extensions: 2939142
Number of successful extensions: 62137
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 61682
Number of HSP's gapped (non-prelim): 452
length of query: 432
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 410
effective length of database: 17,147,199,772
effective search space: 7030351906520
effective search space used: 7030351906520
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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