ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bastl20d01 |
|---|---|
| Clone Library Name | barley_pub |
>GSA_BRANA (Q85WB7) Glutamate-1-semialdehyde 2,1-aminomutase, chloroplast| precursor (EC 5.4.3.8) (GSA) (Glutamate-1-semialdehyde aminotransferase) (GSA-AT) Length = 473 Score = 37.0 bits (84), Expect = 0.028 Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 1/59 (1%) Frame = +3 Query: 60 NSGTRFAGGVRGSMAAFTEEERAVD-DALGYPKAYARLCRAGSGAGALGLPYAHGPPGA 233 NSGT GV AFT +E+ + + + A A L +AGSG LGLP + G P A Sbjct: 161 NSGTEACMGVLRLARAFTNKEKFIKFEGCYHGHANAFLVKAGSGVATLGLPDSPGVPKA 219
>GSA1_ARATH (P42799) Glutamate-1-semialdehyde 2,1-aminomutase 1, chloroplast| precursor (EC 5.4.3.8) (GSA 1) (Glutamate-1-semialdehyde aminotransferase 1) (GSA-AT 1) Length = 474 Score = 37.0 bits (84), Expect = 0.028 Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 1/59 (1%) Frame = +3 Query: 60 NSGTRFAGGVRGSMAAFTEEERAVD-DALGYPKAYARLCRAGSGAGALGLPYAHGPPGA 233 NSGT GV AFT +E+ + + + A A L +AGSG LGLP + G P A Sbjct: 162 NSGTEACMGVLRLARAFTNKEKFIKFEGCYHGHANAFLVKAGSGVATLGLPDSPGVPKA 220
>GSA_SYNEL (Q8DLK8) Glutamate-1-semialdehyde 2,1-aminomutase (EC 5.4.3.8)| (GSA) (Glutamate-1-semialdehyde aminotransferase) (GSA-AT) Length = 437 Score = 34.7 bits (78), Expect = 0.14 Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 1/59 (1%) Frame = +3 Query: 60 NSGTRFAGGVRGSMAAFTEEERAVD-DALGYPKAYARLCRAGSGAGALGLPYAHGPPGA 233 NSGT V M A+T+ E+ + + + A L +AGSG LGLP + G P A Sbjct: 125 NSGTEACMAVLRLMRAYTQREKVIKFEGCYHGHADMFLVKAGSGVATLGLPDSPGVPKA 183
>GSA_ANASP (Q8YS26) Glutamate-1-semialdehyde 2,1-aminomutase (EC 5.4.3.8)| (GSA) (Glutamate-1-semialdehyde aminotransferase) (GSA-AT) Length = 432 Score = 34.3 bits (77), Expect = 0.18 Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 1/57 (1%) Frame = +3 Query: 60 NSGTRFAGGVRGSMAAFTEEERAVD-DALGYPKAYARLCRAGSGAGALGLPYAHGPP 227 NSGT V M AFT E+ + + + A L +AGSG LGLP + G P Sbjct: 120 NSGTEACMAVLRLMRAFTNREKVIKFEGCYHGHADMFLVKAGSGVATLGLPDSPGVP 176
>GSA2_ARATH (Q42522) Glutamate-1-semialdehyde 2,1-aminomutase 2, chloroplast| precursor (EC 5.4.3.8) (GSA 2) (Glutamate-1-semialdehyde aminotransferase 2) (GSA-AT 2) Length = 472 Score = 33.9 bits (76), Expect = 0.24 Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 1/59 (1%) Frame = +3 Query: 60 NSGTRFAGGVRGSMAAFTEEERAVD-DALGYPKAYARLCRAGSGAGALGLPYAHGPPGA 233 NSGT GV AFT +++ + + + A + L +AGSG LGLP + G P A Sbjct: 160 NSGTEACMGVLRLARAFTGKQKFIKFEGCYHGHANSFLVKAGSGVATLGLPDSPGVPKA 218
>GSA_HORVU (P18492) Glutamate-1-semialdehyde 2,1-aminomutase, chloroplast| precursor (EC 5.4.3.8) (GSA) (Glutamate-1-semialdehyde aminotransferase) (GSA-AT) Length = 469 Score = 33.1 bits (74), Expect = 0.40 Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 2/69 (2%) Frame = +3 Query: 60 NSGTRFAGGVRGSMAAFTEEERAVD-DALGYPKAYARLCRAGSGAGALGLPYAHG-PPGA 233 NSGT G + AFT E+ + + + A + L +AGSG LGLP + G P GA Sbjct: 157 NSGTEACMGALRLVRAFTGREKILKFEGCYHGHADSFLVKAGSGVATLGLPDSPGVPKGA 216 Query: 234 FLPYVLQPH 260 + + P+ Sbjct: 217 TVGTLTAPY 225
>GSA_SYNY3 (Q55665) Glutamate-1-semialdehyde 2,1-aminomutase (EC 5.4.3.8)| (GSA) (Glutamate-1-semialdehyde aminotransferase) (GSA-AT) Length = 433 Score = 33.1 bits (74), Expect = 0.40 Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 1/57 (1%) Frame = +3 Query: 60 NSGTRFAGGVRGSMAAFTEEERAVD-DALGYPKAYARLCRAGSGAGALGLPYAHGPP 227 NSGT V M AFT E+ + + + A L +AGSG LGLP + G P Sbjct: 121 NSGTEACMSVLRLMRAFTGREKIIKFEGCYHGHADMFLVKAGSGVATLGLPDSPGVP 177
>FTSK_CORGL (Q8NP53) DNA translocase ftsK| Length = 921 Score = 32.0 bits (71), Expect = 0.90 Identities = 19/49 (38%), Positives = 23/49 (46%) Frame = +2 Query: 287 PRIRPPFAPSPASVPLRDPI*SVQALRAKELNEMFPVVDAEATPTANPR 433 PR PP P PA VP P A R + +PV DA+A A P+ Sbjct: 269 PRRTPPLTPPPAPVPAPAP---TPARRPAASLDKYPVDDAKAEAPAEPQ 314
>GSA_TOBAC (P31593) Glutamate-1-semialdehyde 2,1-aminomutase, chloroplast| precursor (EC 5.4.3.8) (GSA) (Glutamate-1-semialdehyde aminotransferase) (GSA-AT) Length = 478 Score = 31.6 bits (70), Expect = 1.2 Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 1/59 (1%) Frame = +3 Query: 60 NSGTRFAGGVRGSMAAFTEEERAVD-DALGYPKAYARLCRAGSGAGALGLPYAHGPPGA 233 NSGT GV AFT + + + + A L +AGSG LGLP + G P A Sbjct: 166 NSGTEACMGVLRLARAFTGRPKIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGGPKA 224
>GSA_METAC (Q8TT57) Probable glutamate-1-semialdehyde 2,1-aminomutase (EC| 5.4.3.8) (GSA) (Glutamate-1-semialdehyde aminotransferase) (GSA-AT) Length = 424 Score = 31.6 bits (70), Expect = 1.2 Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Frame = +3 Query: 108 FTEEERAVDDALGYPKAY-ARLCRAGSGAGALGLPYAHGPPGAFLPYVLQ 254 FT + + + G+ A+ A L +AGSGA LG P + G P F Y LQ Sbjct: 132 FTRKNKFIKIEGGFHGAHDAVLVKAGSGATTLGEPDSLGIPADFTKYTLQ 181
>GSA_SOYBN (P45621) Glutamate-1-semialdehyde 2,1-aminomutase, chloroplast| precursor (EC 5.4.3.8) (GSA) (Glutamate-1-semialdehyde aminotransferase) (GSA-AT) Length = 466 Score = 31.2 bits (69), Expect = 1.5 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 1/59 (1%) Frame = +3 Query: 60 NSGTRFAGGVRGSMAAFTEEERAVD-DALGYPKAYARLCRAGSGAGALGLPYAHGPPGA 233 NSGT G A+T E+ + + + A L +AGSG LGLP + G P A Sbjct: 154 NSGTEACMGALRLARAYTGREKIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKA 212
>GSA_LYCES (Q40147) Glutamate-1-semialdehyde 2,1-aminomutase, chloroplast| precursor (EC 5.4.3.8) (GSA) (Glutamate-1-semialdehyde aminotransferase) (GSA-AT) Length = 481 Score = 30.8 bits (68), Expect = 2.0 Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 1/59 (1%) Frame = +3 Query: 60 NSGTRFAGGVRGSMAAFTEEERAVD-DALGYPKAYARLCRAGSGAGALGLPYAHGPPGA 233 NSGT GV AFT + + + + A L +AGSG LGLP + G P A Sbjct: 169 NSGTEACMGVLRLARAFTCRPKIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKA 227
>GSA_SYNP6 (P24630) Glutamate-1-semialdehyde 2,1-aminomutase (EC 5.4.3.8)| (GSA) (Glutamate-1-semialdehyde aminotransferase) (GSA-AT) Length = 432 Score = 30.8 bits (68), Expect = 2.0 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 1/57 (1%) Frame = +3 Query: 60 NSGTRFAGGVRGSMAAFTEEERAVD-DALGYPKAYARLCRAGSGAGALGLPYAHGPP 227 NSGT V M A+T ++ + + + A L +AGSG LGLP + G P Sbjct: 120 NSGTEACMAVLRLMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPDSPGVP 176
>PKHA4_HUMAN (Q9H4M7) Pleckstrin homology domain-containing family A member 4| (Phosphoinositol 3-phosphate-binding protein 1) (PEPP-1) Length = 779 Score = 30.4 bits (67), Expect = 2.6 Identities = 25/75 (33%), Positives = 31/75 (41%) Frame = +3 Query: 87 VRGSMAAFTEEERAVDDALGYPKAYARLCRAGSGAGALGLPYAHGPPGAFLPYVLQPHEV 266 +RG + A RA D G P++ AR + G G G G GPP + E Sbjct: 141 LRGWLRALGRASRAEGDDYGQPRSPAR-PQPGEGPGGPG-----GPPEVSRGEEGRISES 194 Query: 267 PSTCLFSRGSARPSL 311 P SRG RP L Sbjct: 195 PEVTRLSRGRGRPRL 209
>TOP3_CAEEL (O61660) DNA topoisomerase 3 (EC 5.99.1.2) (DNA topoisomerase III)| Length = 759 Score = 30.4 bits (67), Expect = 2.6 Identities = 14/29 (48%), Positives = 16/29 (55%) Frame = +1 Query: 391 PGGGRGGDAHRQPARLRQPALEAARPPRQ 477 PGGG GG PA + PA RPPR+ Sbjct: 631 PGGGGGGGPTGPPAPPKPPAKPRGRPPRK 659
>Y4FQ_RHISN (P55455) Hypothetical protein y4fQ| Length = 392 Score = 30.4 bits (67), Expect = 2.6 Identities = 25/75 (33%), Positives = 31/75 (41%), Gaps = 1/75 (1%) Frame = +3 Query: 48 CSVDNSGTRFAGGVRGSMAAFTEEERAVDDALGYPKAYARLCRA-GSGAGALGLPYAHGP 224 C V+N GT AA E A D+ L P + + G GA G PY Sbjct: 182 CHVENDGTA---------AALGEYVFAGDNVLDDPLFFIHIGHGVGGGAVIDGRPYGGAH 232 Query: 225 PGAFLPYVLQPHEVP 269 A LP VL P++ P Sbjct: 233 GNACLPGVLYPYDQP 247
>GSA_ECOLI (P23893) Glutamate-1-semialdehyde 2,1-aminomutase (EC 5.4.3.8)| (GSA) (Glutamate-1-semialdehyde aminotransferase) (GSA-AT) Length = 426 Score = 30.0 bits (66), Expect = 3.4 Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 1/65 (1%) Frame = +3 Query: 60 NSGTRFAGGVRGSMAAFTEEERAVD-DALGYPKAYARLCRAGSGAGALGLPYAHGPPGAF 236 NSGT FT ++ + + + A L +AGSGA LG P + G P F Sbjct: 113 NSGTEATMSAIRLARGFTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPADF 172 Query: 237 LPYVL 251 Y L Sbjct: 173 AKYTL 177
>POLR_TYMVC (P28477) RNA replicase polyprotein (EC 2.7.7.48)| Length = 1844 Score = 30.0 bits (66), Expect = 3.4 Identities = 14/35 (40%), Positives = 17/35 (48%) Frame = +2 Query: 275 LPFLPRIRPPFAPSPASVPLRDPI*SVQALRAKEL 379 LP P + P P P S+P +DP SV L L Sbjct: 679 LPATPDLEPAHTPPPLSIPHQDPTDSVDPLMGSHL 713
>HMGCL_MOUSE (P38060) Hydroxymethylglutaryl-CoA lyase, mitochondrial precursor| (EC 4.1.3.4) (HMG-CoA lyase) (HL) (3-hydroxy-3-methylglutarate-CoA lyase) Length = 325 Score = 29.6 bits (65), Expect = 4.4 Identities = 27/91 (29%), Positives = 37/91 (40%), Gaps = 12/91 (13%) Frame = +3 Query: 45 HCSVDNSGTRFAGGVRGSMAAFTEEERAVDDALGYP-----------KAYARLCRAGSGA 191 +CS++ S RFAG ++ + AA V ALG P + +L G Sbjct: 140 NCSIEESFQRFAGVMQAAQAASISVRGYVSCALGCPYEGKVSPAKVAEVAKKLYSMGCYE 199 Query: 192 GALGLPYAHGPPGAFLPYVLQ-PHEVPSTCL 281 +LG G PG + HEVP T L Sbjct: 200 ISLGDTIGVGTPGLMKDMLTAVMHEVPVTAL 230
>BIOB_METSK (P94966) Biotin synthase (EC 2.8.1.6) (Biotin synthetase)| Length = 341 Score = 29.6 bits (65), Expect = 4.4 Identities = 15/35 (42%), Positives = 20/35 (57%) Frame = +1 Query: 382 RDVPGGGRGGDAHRQPARLRQPALEAARPPRQRRL 486 +D+ GRG + P R+RQP AA P+QR L Sbjct: 104 QDLHAAGRGTRSRVLPRRMRQPFCMAAWQPKQRDL 138
>GSA_PSESM (Q87VY5) Glutamate-1-semialdehyde 2,1-aminomutase (EC 5.4.3.8)| (GSA) (Glutamate-1-semialdehyde aminotransferase) (GSA-AT) Length = 427 Score = 29.6 bits (65), Expect = 4.4 Identities = 14/28 (50%), Positives = 18/28 (64%) Frame = +3 Query: 168 LCRAGSGAGALGLPYAHGPPGAFLPYVL 251 L +AGSGA LG+P + G P AF + L Sbjct: 150 LVKAGSGALTLGVPSSPGVPAAFAKHTL 177
>GSA_METMA (Q8PW58) Probable glutamate-1-semialdehyde 2,1-aminomutase (EC| 5.4.3.8) (GSA) (Glutamate-1-semialdehyde aminotransferase) (GSA-AT) Length = 424 Score = 29.3 bits (64), Expect = 5.8 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 1/50 (2%) Frame = +3 Query: 108 FTEEERAVDDALGYPKAY-ARLCRAGSGAGALGLPYAHGPPGAFLPYVLQ 254 FT + + G+ A+ A L +AGSGA LG P + G P F + LQ Sbjct: 132 FTRRNKFIKIEGGFHGAHDAVLVKAGSGATTLGEPDSLGIPADFTKHTLQ 181
>GSA_METKA (Q8TYL6) Probable glutamate-1-semialdehyde 2,1-aminomutase (EC| 5.4.3.8) (GSA) (Glutamate-1-semialdehyde aminotransferase) (GSA-AT) Length = 430 Score = 28.9 bits (63), Expect = 7.6 Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 1/57 (1%) Frame = +3 Query: 60 NSGTRFAGGVRGSMAAFTEEERAVDDALGYPKAY-ARLCRAGSGAGALGLPYAHGPP 227 N+GT A+T E+ V Y A+ A L RAGSGA LG P + G P Sbjct: 116 NTGTEATMSAIRLARAYTGREKIVKFEGCYHGAHDAVLVRAGSGASELGAPDSPGIP 172
>HXA10_HUMAN (P31260) Homeobox protein Hox-A10 (Hox-1H) (Hox-1.8) (PL)| Length = 393 Score = 28.9 bits (63), Expect = 7.6 Identities = 16/29 (55%), Positives = 17/29 (58%), Gaps = 4/29 (13%) Frame = +3 Query: 180 GSGAGALGLPYAHG----PPGAFLPYVLQ 254 G+G G G YAHG PP A LPY LQ Sbjct: 31 GAGGGGGGGYYAHGGVYLPPAADLPYGLQ 59
>C1QT2_HUMAN (Q9BXJ5) Complement C1q tumor necrosis factor-related protein 2| precursor Length = 285 Score = 28.9 bits (63), Expect = 7.6 Identities = 17/40 (42%), Positives = 19/40 (47%) Frame = -3 Query: 304 GRADPREKRQVEGTSWGWRT*GRKAPGGPWA*GRPSAPAP 185 GRA PR + V GT T G+K P G G P P P Sbjct: 103 GRAGPRGPKGVNGTPGKHGTPGKKGPKGKK--GEPGLPGP 140
>BCTN5_CAPHI (P82018) Bactenecin-5 precursor (Bac5) (ChBac5) (Cathelicidin-2)| Length = 176 Score = 28.9 bits (63), Expect = 7.6 Identities = 14/26 (53%), Positives = 15/26 (57%) Frame = +2 Query: 269 FYLPFLPRIRPPFAPSPASVPLRDPI 346 F PF P +RPPF P P P R PI Sbjct: 145 FNPPFRPPVRPPFRP-PFRPPFRPPI 169
>LIN10_CAEEL (O17583) Protein lin-10 (Abnormal cell lineage protein 10)| Length = 982 Score = 28.5 bits (62), Expect = 9.9 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%) Frame = +3 Query: 9 QTPDPDSRHSSQHCSVDNSGTRFAGGVRGSMAAFTEEE-RAVDDA 140 Q P P S+ SS H S D++G + AG V S + E R +D+ Sbjct: 123 QQPRPSSQASSSHRSEDDNGRQTAGSVVSSNVSPNHREVRPAEDS 167
>POLR_TYMV (P10358) RNA replicase polyprotein (EC 2.7.7.48)| Length = 1844 Score = 28.5 bits (62), Expect = 9.9 Identities = 13/35 (37%), Positives = 16/35 (45%) Frame = +2 Query: 275 LPFLPRIRPPFAPSPASVPLRDPI*SVQALRAKEL 379 LP P + P P P S+P +DP S L L Sbjct: 679 LPATPDLEPAHTPPPLSIPHQDPTDSADPLMGSHL 713
>PPNK_HELPJ (Q9ZJ81) Probable inorganic polyphosphate/ATP-NAD kinase (EC| 2.7.1.23) (Poly(P)/ATP NAD kinase) Length = 284 Score = 28.5 bits (62), Expect = 9.9 Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 2/33 (6%) Frame = +3 Query: 135 DALGYPKAYARLCRAGSGA--GALGLPYAHGPP 227 DA KAYA LC G G GAL + +AH P Sbjct: 54 DAQLIKKAYAFLCLGGDGTILGALRMTHAHNKP 86 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,467,941 Number of Sequences: 219361 Number of extensions: 856634 Number of successful extensions: 3972 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 3515 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3963 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3362826254 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
