Clone Name | bastl20d01 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 149 bits (75), Expect = 1e-32 Identities = 117/131 (89%) Strand = Plus / Minus Query: 353 gtgcaggcgctgcgggccaaggagctcaacgagatgttcccggtggtggacgcggaggcg 412 ||||||||| ||||||| ||||| || ||||||||||||||||||| |||||||||||| Sbjct: 3941106 gtgcaggcgatgcgggcgaaggatctgaacgagatgttcccggtggccgacgcggaggcg 3941047 Query: 413 acgcccaccgccaacccgcgcggcttcgccaacctgctctggaagcagctcgaccacctc 472 |||| || || |||||||| || ||||| |||||||| ||||||||||||||||||||| Sbjct: 3941046 gcgccgacggcgaacccgcgggggttcgcgaacctgctgtggaagcagctcgaccacctc 3940987 Query: 473 ggcaacgccgg 483 ||||||||||| Sbjct: 3940986 ggcaacgccgg 3940976 Score = 107 bits (54), Expect = 3e-20 Identities = 137/164 (83%), Gaps = 3/164 (1%) Strand = Plus / Minus Query: 103 cggcgttcacggaggaggagagggcggtggacgacgcgctgggctaccccaaggcctacg 162 ||||||||||||||||||||| ||||||||| ||| |||| ||||||||||||||||||| Sbjct: 3941343 cggcgttcacggaggaggagaaggcggtggatgactcgctcggctaccccaaggcctacg 3941284 Query: 163 ccaggctctgccgcgccggctccggcgcgggcgcactcggcctcccctacgcccacggcc 222 | | |||||||||| ||| ||||| |||| || ||||| |||| |||||||| Sbjct: 3941283 cgcgcctctgccgcggcgg---cggcggtggcggcggtggactcccgtacggccacggcc 3941227 Query: 223 cgcccggcgccttcctcccctacgtcctccagccccacgaggta 266 |||| || ||||||||||||||||||||| || ||||||||| Sbjct: 3941226 cgccgcacggcttcctcccctacgtcctccacccgcacgaggta 3941183
>dbj|AP002523.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0013F10 Length = 163095 Score = 149 bits (75), Expect = 1e-32 Identities = 117/131 (89%) Strand = Plus / Minus Query: 353 gtgcaggcgctgcgggccaaggagctcaacgagatgttcccggtggtggacgcggaggcg 412 ||||||||| ||||||| ||||| || ||||||||||||||||||| |||||||||||| Sbjct: 63010 gtgcaggcgatgcgggcgaaggatctgaacgagatgttcccggtggccgacgcggaggcg 62951 Query: 413 acgcccaccgccaacccgcgcggcttcgccaacctgctctggaagcagctcgaccacctc 472 |||| || || |||||||| || ||||| |||||||| ||||||||||||||||||||| Sbjct: 62950 gcgccgacggcgaacccgcgggggttcgcgaacctgctgtggaagcagctcgaccacctc 62891 Query: 473 ggcaacgccgg 483 ||||||||||| Sbjct: 62890 ggcaacgccgg 62880 Score = 107 bits (54), Expect = 3e-20 Identities = 137/164 (83%), Gaps = 3/164 (1%) Strand = Plus / Minus Query: 103 cggcgttcacggaggaggagagggcggtggacgacgcgctgggctaccccaaggcctacg 162 ||||||||||||||||||||| ||||||||| ||| |||| ||||||||||||||||||| Sbjct: 63247 cggcgttcacggaggaggagaaggcggtggatgactcgctcggctaccccaaggcctacg 63188 Query: 163 ccaggctctgccgcgccggctccggcgcgggcgcactcggcctcccctacgcccacggcc 222 | | |||||||||| ||| ||||| |||| || ||||| |||| |||||||| Sbjct: 63187 cgcgcctctgccgcggcgg---cggcggtggcggcggtggactcccgtacggccacggcc 63131 Query: 223 cgcccggcgccttcctcccctacgtcctccagccccacgaggta 266 |||| || ||||||||||||||||||||| || ||||||||| Sbjct: 63130 cgccgcacggcttcctcccctacgtcctccacccgcacgaggta 63087
>ref|XM_550312.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2808 Score = 141 bits (71), Expect = 2e-30 Identities = 113/127 (88%) Strand = Plus / Plus Query: 357 aggcgctgcgggccaaggagctcaacgagatgttcccggtggtggacgcggaggcgacgc 416 ||||| ||||||| ||||| || ||||||||||||||||||| |||||||||||| ||| Sbjct: 220 aggcgatgcgggcgaaggatctgaacgagatgttcccggtggccgacgcggaggcggcgc 279 Query: 417 ccaccgccaacccgcgcggcttcgccaacctgctctggaagcagctcgaccacctcggca 476 | || || |||||||| || ||||| |||||||| ||||||||||||||||||||||||| Sbjct: 280 cgacggcgaacccgcgggggttcgcgaacctgctgtggaagcagctcgaccacctcggca 339 Query: 477 acgccgg 483 ||||||| Sbjct: 340 acgccgg 346 Score = 103 bits (52), Expect = 5e-19 Identities = 135/162 (83%), Gaps = 3/162 (1%) Strand = Plus / Plus Query: 103 cggcgttcacggaggaggagagggcggtggacgacgcgctgggctaccccaaggcctacg 162 ||||||||||||||||||||| ||||||||| ||| |||| ||||||||||||||||||| Sbjct: 64 cggcgttcacggaggaggagaaggcggtggatgactcgctcggctaccccaaggcctacg 123 Query: 163 ccaggctctgccgcgccggctccggcgcgggcgcactcggcctcccctacgcccacggcc 222 | | |||||||||| ||| ||||| |||| || ||||| |||| |||||||| Sbjct: 124 cgcgcctctgccgcggcgg---cggcggtggcggcggtggactcccgtacggccacggcc 180 Query: 223 cgcccggcgccttcctcccctacgtcctccagccccacgagg 264 |||| || ||||||||||||||||||||| || ||||||| Sbjct: 181 cgccgcacggcttcctcccctacgtcctccacccgcacgagg 222
>dbj|AK102552.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033097C16, full insert sequence Length = 2807 Score = 141 bits (71), Expect = 2e-30 Identities = 113/127 (88%) Strand = Plus / Plus Query: 357 aggcgctgcgggccaaggagctcaacgagatgttcccggtggtggacgcggaggcgacgc 416 ||||| ||||||| ||||| || ||||||||||||||||||| |||||||||||| ||| Sbjct: 220 aggcgatgcgggcgaaggatctgaacgagatgttcccggtggccgacgcggaggcggcgc 279 Query: 417 ccaccgccaacccgcgcggcttcgccaacctgctctggaagcagctcgaccacctcggca 476 | || || |||||||| || ||||| |||||||| ||||||||||||||||||||||||| Sbjct: 280 cgacggcgaacccgcgggggttcgcgaacctgctgtggaagcagctcgaccacctcggca 339 Query: 477 acgccgg 483 ||||||| Sbjct: 340 acgccgg 346 Score = 103 bits (52), Expect = 5e-19 Identities = 135/162 (83%), Gaps = 3/162 (1%) Strand = Plus / Plus Query: 103 cggcgttcacggaggaggagagggcggtggacgacgcgctgggctaccccaaggcctacg 162 ||||||||||||||||||||| ||||||||| ||| |||| ||||||||||||||||||| Sbjct: 64 cggcgttcacggaggaggagaaggcggtggatgactcgctcggctaccccaaggcctacg 123 Query: 163 ccaggctctgccgcgccggctccggcgcgggcgcactcggcctcccctacgcccacggcc 222 | | |||||||||| ||| ||||| |||| || ||||| |||| |||||||| Sbjct: 124 cgcgcctctgccgcggcgg---cggcggtggcggcggtggactcccgtacggccacggcc 180 Query: 223 cgcccggcgccttcctcccctacgtcctccagccccacgagg 264 |||| || ||||||||||||||||||||| || ||||||| Sbjct: 181 cgccgcacggcttcctcccctacgtcctccacccgcacgagg 222
>gb|AC137928.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0040B10, complete sequence Length = 150825 Score = 97.6 bits (49), Expect = 3e-17 Identities = 110/129 (85%), Gaps = 1/129 (0%) Strand = Plus / Plus Query: 353 gtgcaggcgctgcgggccaaggagctcaacgagatgttcccggtggtggacgcggaggcg 412 ||||||||| ||| ||| ||||| || ||||||||||||||||||| || ||||||||| Sbjct: 84681 gtgcaggcgatgccggcgaaggatctgaacgagatgttcccggtggccgaagcggaggcg 84740 Query: 413 acgcccaccgccaacccgcgcggcttcgccaacctgctctggaagcagctcgaccacctc 472 |||| |||| |||||||| || |||| |||||||| || |||||||| ||||||||| Sbjct: 84741 gcgccg-ccgcgaacccgcgggggttcgtgaacctgctgtgcaagcagcttgaccacctc 84799 Query: 473 ggcaacgcc 481 ||||||||| Sbjct: 84800 ggcaacgcc 84808
>gb|AC137620.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0014K18, complete sequence Length = 123508 Score = 97.6 bits (49), Expect = 3e-17 Identities = 110/129 (85%), Gaps = 1/129 (0%) Strand = Plus / Plus Query: 353 gtgcaggcgctgcgggccaaggagctcaacgagatgttcccggtggtggacgcggaggcg 412 ||||||||| ||| ||| ||||| || ||||||||||||||||||| || ||||||||| Sbjct: 9231 gtgcaggcgatgccggcgaaggatctgaacgagatgttcccggtggccgaagcggaggcg 9290 Query: 413 acgcccaccgccaacccgcgcggcttcgccaacctgctctggaagcagctcgaccacctc 472 |||| |||| |||||||| || |||| |||||||| || |||||||| ||||||||| Sbjct: 9291 gcgccg-ccgcgaacccgcgggggttcgtgaacctgctgtgcaagcagcttgaccacctc 9349 Query: 473 ggcaacgcc 481 ||||||||| Sbjct: 9350 ggcaacgcc 9358
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 97.6 bits (49), Expect = 3e-17 Identities = 110/129 (85%), Gaps = 1/129 (0%) Strand = Plus / Plus Query: 353 gtgcaggcgctgcgggccaaggagctcaacgagatgttcccggtggtggacgcggaggcg 412 ||||||||| ||| ||| ||||| || ||||||||||||||||||| || ||||||||| Sbjct: 19756607 gtgcaggcgatgccggcgaaggatctgaacgagatgttcccggtggccgaagcggaggcg 19756666 Query: 413 acgcccaccgccaacccgcgcggcttcgccaacctgctctggaagcagctcgaccacctc 472 |||| |||| |||||||| || |||| |||||||| || |||||||| ||||||||| Sbjct: 19756667 gcgccg-ccgcgaacccgcgggggttcgtgaacctgctgtgcaagcagcttgaccacctc 19756725 Query: 473 ggcaacgcc 481 ||||||||| Sbjct: 19756726 ggcaacgcc 19756734
>ref|XM_475221.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1011 Score = 87.7 bits (44), Expect = 3e-14 Identities = 105/124 (84%), Gaps = 1/124 (0%) Strand = Plus / Plus Query: 358 ggcgctgcgggccaaggagctcaacgagatgttcccggtggtggacgcggaggcgacgcc 417 |||| ||| ||| ||||| || ||||||||||||||||||| || ||||||||| |||| Sbjct: 157 ggcgatgccggcgaaggatctgaacgagatgttcccggtggccgaagcggaggcggcgcc 216 Query: 418 caccgccaacccgcgcggcttcgccaacctgctctggaagcagctcgaccacctcggcaa 477 |||| |||||||| || |||| |||||||| || |||||||| |||||||||||||| Sbjct: 217 g-ccgcgaacccgcgggggttcgtgaacctgctgtgcaagcagcttgaccacctcggcaa 275 Query: 478 cgcc 481 |||| Sbjct: 276 cgcc 279
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 77.8 bits (39), Expect = 3e-11 Identities = 108/131 (82%) Strand = Plus / Plus Query: 353 gtgcaggcgctgcgggccaaggagctcaacgagatgttcccggtggtggacgcggaggcg 412 ||||||||| | ||||| ||||| || ||||||||||||||||||| ||||||||| | Sbjct: 28125194 gtgcaggcgatacgggcaaaggatctgaacgagatgttcccggtggccaacgcggaggtg 28125253 Query: 413 acgcccaccgccaacccgcgcggcttcgccaacctgctctggaagcagctcgaccacctc 472 |||| | |||||||| || ||||| |||||||| |||||||||||| |||||||| Sbjct: 28125254 gcgccgatgttgaacccgcgagggttcgcgaacctgctgtggaagcagctcaaccacctc 28125313 Query: 473 ggcaacgccgg 483 || ||| |||| Sbjct: 28125314 ggtaacaccgg 28125324
>dbj|AP004071.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1717_A09 Length = 203132 Score = 77.8 bits (39), Expect = 3e-11 Identities = 108/131 (82%) Strand = Plus / Plus Query: 353 gtgcaggcgctgcgggccaaggagctcaacgagatgttcccggtggtggacgcggaggcg 412 ||||||||| | ||||| ||||| || ||||||||||||||||||| ||||||||| | Sbjct: 114841 gtgcaggcgatacgggcaaaggatctgaacgagatgttcccggtggccaacgcggaggtg 114900 Query: 413 acgcccaccgccaacccgcgcggcttcgccaacctgctctggaagcagctcgaccacctc 472 |||| | |||||||| || ||||| |||||||| |||||||||||| |||||||| Sbjct: 114901 gcgccgatgttgaacccgcgagggttcgcgaacctgctgtggaagcagctcaaccacctc 114960 Query: 473 ggcaacgccgg 483 || ||| |||| Sbjct: 114961 ggtaacaccgg 114971
>ref|XM_467193.1| Oryza sativa (japonica cultivar-group), mRNA Length = 438 Score = 69.9 bits (35), Expect = 7e-09 Identities = 98/119 (82%) Strand = Plus / Plus Query: 365 cgggccaaggagctcaacgagatgttcccggtggtggacgcggaggcgacgcccaccgcc 424 ||||| ||||| || ||||||||||||||||||| ||||||||| | |||| | Sbjct: 238 cgggcaaaggatctgaacgagatgttcccggtggccaacgcggaggtggcgccgatgttg 297 Query: 425 aacccgcgcggcttcgccaacctgctctggaagcagctcgaccacctcggcaacgccgg 483 |||||||| || ||||| |||||||| |||||||||||| |||||||||| ||| |||| Sbjct: 298 aacccgcgagggttcgcgaacctgctgtggaagcagctcaaccacctcggtaacaccgg 356
>gb|AE004876.1| Pseudomonas aeruginosa PAO1, section 437 of 529 of the complete genome Length = 16704 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 378 tcaacgagatgttcccggtggtg 400 ||||||||||||||||||||||| Sbjct: 1793 tcaacgagatgttcccggtggtg 1771
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 378 tcaacgagatgttcccggtggtg 400 ||||||||||||||||||||||| Sbjct: 4803786 tcaacgagatgttcccggtggtg 4803764
>emb|AL138883.12| Human DNA sequence from clone RP1-23G18 on chromosome 6 Contains the 5' end of the GMPR gene for monophosphate reductase and a CpG island, complete sequence Length = 45974 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 234 ttcctcccctacgtcctccag 254 ||||||||||||||||||||| Sbjct: 29490 ttcctcccctacgtcctccag 29470
>gb|AF314647.1|AF314647 Plasmodium vivax CG4 (cg4) gene, partial cds Length = 315 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 97 cgatggcggcgttcacggaggaggagagg 125 |||||| ||||||||||||| |||||||| Sbjct: 110 cgatggtggcgttcacggagaaggagagg 138
>gb|M29297.1|STMTN4556 Streptomyces fradiae transposon Tn4556 transposase, resolvase, and unknown protein genes, complete cds; and unknown protein gene, partial cds Length = 6806 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 124 gggcggtggacgacgcgctgg 144 ||||||||||||||||||||| Sbjct: 1115 gggcggtggacgacgcgctgg 1135
>gb|AC096772.3| Homo sapiens BAC clone RP11-801F7 from 2, complete sequence Length = 177733 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 286 cccgcggatccgcccgccctt 306 ||||||||||||||||||||| Sbjct: 2442 cccgcggatccgcccgccctt 2422
>dbj|D14464.1|FVBCR1 Flavobacterium sp. gene for creatinase, complete cds Length = 1723 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 368 gccaaggagctcaacgagatgttcc 392 |||||||||||||||||||| |||| Sbjct: 1340 gccaaggagctcaacgagatcttcc 1364
>dbj|D00656.1|FVBCRE Flavobacterium sp. gene for creatinase, complete cds Length = 1956 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 368 gccaaggagctcaacgagatgttcc 392 |||||||||||||||||||| |||| Sbjct: 1493 gccaaggagctcaacgagatcttcc 1517
>ref|XM_878477.1| PREDICTED: Bos taurus similar to RNA polymerase II elongation factor ELL (Eleven-nineteen lysine-rich leukemia protein), transcript variant 2 (LOC506578), mRNA Length = 3957 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 156 gcctacgccaggctctgccgcgcc 179 |||| ||||||||||||||||||| Sbjct: 419 gcctgcgccaggctctgccgcgcc 396
>ref|XM_583044.2| PREDICTED: Bos taurus similar to RNA polymerase II elongation factor ELL (Eleven-nineteen lysine-rich leukemia protein), transcript variant 1 (LOC506578), mRNA Length = 3939 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 156 gcctacgccaggctctgccgcgcc 179 |||| ||||||||||||||||||| Sbjct: 419 gcctgcgccaggctctgccgcgcc 396
>ref|XM_502225.1| Yarrowia lipolytica CLIB122, YALI0C24420g predicted mRNA Length = 1206 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 tccgtagacaacagcggtac 70 |||||||||||||||||||| Sbjct: 981 tccgtagacaacagcggtac 962
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 ccgcgccggctccggcgcgg 192 |||||||||||||||||||| Sbjct: 2957044 ccgcgccggctccggcgcgg 2957063
>gb|AC091776.19| Chlamydomonas reinhardtii clone cr-4i21, complete sequence Length = 48498 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 173 ccgcgccggctccggcgcgggcgc 196 |||||||||| ||||||||||||| Sbjct: 35829 ccgcgccggcgccggcgcgggcgc 35852
>gb|AC090435.28| Chlamydomonas reinhardtii clone cr-32m22, complete sequence Length = 79677 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 173 ccgcgccggctccggcgcgggcgc 196 |||||||||| ||||||||||||| Sbjct: 14542 ccgcgccggcgccggcgcgggcgc 14565
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 461 ctcgaccacctcggcaacgc 480 |||||||||||||||||||| Sbjct: 1628817 ctcgaccacctcggcaacgc 1628798
>gb|AC027312.4| Homo sapiens chromosome 5 clone CTC-265N9, complete sequence Length = 126036 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 302 cccttcgctccctcccccgcctcc 325 |||||| ||||||||||||||||| Sbjct: 87450 cccttctctccctcccccgcctcc 87427
>gb|AC157774.5| Mus musculus chromosome 8, clone RP23-423E20, complete sequence Length = 198967 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 361 gctgcgggccaaggagctca 380 |||||||||||||||||||| Sbjct: 31117 gctgcgggccaaggagctca 31098
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 398 gtggacgcggaggcgacgcc 417 |||||||||||||||||||| Sbjct: 3936048 gtggacgcggaggcgacgcc 3936029
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 302 cccttcgctccctcccccgc 321 |||||||||||||||||||| Sbjct: 15937738 cccttcgctccctcccccgc 15937757
>gb|AY158472.1| Ovis aries immunoglobulin V lambda chain 4.1.5 gene, partial cds Length = 439 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 444 acctgctctggaagcagctc 463 |||||||||||||||||||| Sbjct: 204 acctgctctggaagcagctc 223
>gb|AY899214.1| Streptomyces aizunensis strain NRRL B-11277 glycosyltransferase, polyketide synthase type Is, acyl transferase, membrane protein, ABC transporter, sugar dehydratase/epimerase, sugar epimerase, sugar nucleotidyltransferase, sugar dehydratase/epimerase, thioesterase, acyl CoA ligase, amine oxidase, phosphopantetheinyl transferase, transcriptional regulator, carboxylase/carboxyltransferase, amidinohydrolase, amide synthetase, 5-aminolevulinate synthase, and acyl CoA ligase genes, complete cds; and unknown gene Length = 161719 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 351 ccgtgcaggcgctgcgggcc 370 |||||||||||||||||||| Sbjct: 57246 ccgtgcaggcgctgcgggcc 57265
>gb|AC084797.5| Homo sapiens chromosome 16 clone RP11-62O3, complete sequence Length = 163855 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 302 cccttcgctccctcccccgcctcc 325 |||||| ||||||||||||||||| Sbjct: 46224 cccttccctccctcccccgcctcc 46201
>ref|XM_341896.2| PREDICTED: Rattus norvegicus stromal interaction molecule 1 (predicted) (Stim1_predicted), mRNA Length = 4037 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 302 cccttcgctccctcccccgcctccgtgc 329 |||||| ||||||||||| ||||||||| Sbjct: 186 cccttctctccctcccccacctccgtgc 213
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 456 agcagctcgaccacctcggc 475 |||||||||||||||||||| Sbjct: 4434000 agcagctcgaccacctcggc 4433981
>dbj|AP005641.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0027N13 Length = 179669 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 302 cccttcgctccctcccccgc 321 |||||||||||||||||||| Sbjct: 177252 cccttcgctccctcccccgc 177271
>dbj|AP005642.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0040K22 Length = 155832 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 302 cccttcgctccctcccccgc 321 |||||||||||||||||||| Sbjct: 19140 cccttcgctccctcccccgc 19159
>gb|AE014299.1| Shewanella oneidensis MR-1, complete genome Length = 4969803 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 419 accgccaacccgcgcggctt 438 |||||||||||||||||||| Sbjct: 3636027 accgccaacccgcgcggctt 3636046
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 353 gtgcaggcgctgcgggccaa 372 |||||||||||||||||||| Sbjct: 3925047 gtgcaggcgctgcgggccaa 3925028
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 398 gtggacgcggaggcgacgcc 417 |||||||||||||||||||| Sbjct: 3936022 gtggacgcggaggcgacgcc 3936003
>emb|AL590446.1|CNS07EGD chromosome VI of strain GB-M1 of Encephalitozoon cuniculi (Microspora) Length = 220294 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 368 gccaaggagctcaacgagatgttc 391 ||||||||||||| |||||||||| Sbjct: 84289 gccaaggagctcagcgagatgttc 84312
>emb|AL732376.2|CNS08C8Z Oryza sativa chromosome 12, . BAC OSJNBa0086B10 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 152090 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 398 gtggacgcggaggcgacgcc 417 |||||||||||||||||||| Sbjct: 98024 gtggacgcggaggcgacgcc 98005
>emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB122 of Yarrowia lipolytica Length = 3272609 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 tccgtagacaacagcggtac 70 |||||||||||||||||||| Sbjct: 3255830 tccgtagacaacagcggtac 3255811
>emb|AL596104.24| Mouse DNA sequence from clone RP23-326P8 on chromosome 11, complete sequence Length = 164530 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 232 ccttcctcccctacgtcctccagcccca 259 |||||||| ||||| ||||||||||||| Sbjct: 50035 ccttcctctcctacctcctccagcccca 50008
>emb|AJ415104.1|HSA415104 Homo sapiens partial IGVL1b gene for immunoglobulin lambda chain variable region, donor BJ, cell109 Length = 270 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 444 acctgctctggaagcagctc 463 |||||||||||||||||||| Sbjct: 25 acctgctctggaagcagctc 44 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,645,753 Number of Sequences: 3902068 Number of extensions: 3645753 Number of successful extensions: 75050 Number of sequences better than 10.0: 45 Number of HSP's better than 10.0 without gapping: 45 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 73810 Number of HSP's gapped (non-prelim): 1236 length of query: 486 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 464 effective length of database: 17,147,199,772 effective search space: 7956300694208 effective search space used: 7956300694208 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)