ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl20d01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 149 1e-32
2dbj|AP002523.1| Oryza sativa (japonica cultivar-group) genomic D... 149 1e-32
3ref|XM_550312.1| Oryza sativa (japonica cultivar-group), mRNA 141 2e-30
4dbj|AK102552.1| Oryza sativa (japonica cultivar-group) cDNA clon... 141 2e-30
5gb|AC137928.3| Oryza sativa (japonica cultivar-group) chromosome... 98 3e-17
6gb|AC137620.2| Oryza sativa (japonica cultivar-group) chromosome... 98 3e-17
7dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 98 3e-17
8ref|XM_475221.1| Oryza sativa (japonica cultivar-group), predic... 88 3e-14
9dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 78 3e-11
10dbj|AP004071.3| Oryza sativa (japonica cultivar-group) genomic D... 78 3e-11
11ref|XM_467193.1| Oryza sativa (japonica cultivar-group), mRNA 70 7e-09
12gb|AE004876.1| Pseudomonas aeruginosa PAO1, section 437 of 529 o... 46 0.11
13gb|AE015451.1| Pseudomonas putida KT2440 complete genome 46 0.11
14emb|AL138883.12| Human DNA sequence from clone RP1-23G18 on chro... 42 1.7
15gb|AF314647.1|AF314647 Plasmodium vivax CG4 (cg4) gene, partial cds 42 1.7
16gb|M29297.1|STMTN4556 Streptomyces fradiae transposon Tn4556 tra... 42 1.7
17gb|AC096772.3| Homo sapiens BAC clone RP11-801F7 from 2, complet... 42 1.7
18dbj|D14464.1|FVBCR1 Flavobacterium sp. gene for creatinase, comp... 42 1.7
19dbj|D00656.1|FVBCRE Flavobacterium sp. gene for creatinase, comp... 42 1.7
20ref|XM_878477.1| PREDICTED: Bos taurus similar to RNA polymerase... 40 6.6
21ref|XM_583044.2| PREDICTED: Bos taurus similar to RNA polymerase... 40 6.6
22ref|XM_502225.1| Yarrowia lipolytica CLIB122, YALI0C24420g predi... 40 6.6
23gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 40 6.6
24gb|AC091776.19| Chlamydomonas reinhardtii clone cr-4i21, complet... 40 6.6
25gb|AC090435.28| Chlamydomonas reinhardtii clone cr-32m22, comple... 40 6.6
26dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 40 6.6
27gb|AC027312.4| Homo sapiens chromosome 5 clone CTC-265N9, comple... 40 6.6
28gb|AC157774.5| Mus musculus chromosome 8, clone RP23-423E20, com... 40 6.6
29dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
30dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
31gb|AY158472.1| Ovis aries immunoglobulin V lambda chain 4.1.5 ge... 40 6.6
32gb|AY899214.1| Streptomyces aizunensis strain NRRL B-11277 glyco... 40 6.6
33gb|AC084797.5| Homo sapiens chromosome 16 clone RP11-62O3, compl... 40 6.6
34ref|XM_341896.2| PREDICTED: Rattus norvegicus stromal interactio... 40 6.6
35dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 6.6
36dbj|AP005641.4| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
37dbj|AP005642.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
38gb|AE014299.1| Shewanella oneidensis MR-1, complete genome 40 6.6
39gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 6.6
40gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.6
41emb|AL590446.1|CNS07EGD chromosome VI of strain GB-M1 of Encepha... 40 6.6
42emb|AL732376.2|CNS08C8Z Oryza sativa chromosome 12, . BAC OSJNBa... 40 6.6
43emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB1... 40 6.6
44emb|AL596104.24| Mouse DNA sequence from clone RP23-326P8 on chr... 40 6.6
45emb|AJ415104.1|HSA415104 Homo sapiens partial IGVL1b gene for im... 40 6.6

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score =  149 bits (75), Expect = 1e-32
 Identities = 117/131 (89%)
 Strand = Plus / Minus

                                                                           
Query: 353     gtgcaggcgctgcgggccaaggagctcaacgagatgttcccggtggtggacgcggaggcg 412
               ||||||||| ||||||| ||||| || |||||||||||||||||||  ||||||||||||
Sbjct: 3941106 gtgcaggcgatgcgggcgaaggatctgaacgagatgttcccggtggccgacgcggaggcg 3941047

                                                                           
Query: 413     acgcccaccgccaacccgcgcggcttcgccaacctgctctggaagcagctcgaccacctc 472
                |||| || || |||||||| || ||||| |||||||| |||||||||||||||||||||
Sbjct: 3941046 gcgccgacggcgaacccgcgggggttcgcgaacctgctgtggaagcagctcgaccacctc 3940987

                          
Query: 473     ggcaacgccgg 483
               |||||||||||
Sbjct: 3940986 ggcaacgccgg 3940976



 Score =  107 bits (54), Expect = 3e-20
 Identities = 137/164 (83%), Gaps = 3/164 (1%)
 Strand = Plus / Minus

                                                                           
Query: 103     cggcgttcacggaggaggagagggcggtggacgacgcgctgggctaccccaaggcctacg 162
               ||||||||||||||||||||| ||||||||| ||| |||| |||||||||||||||||||
Sbjct: 3941343 cggcgttcacggaggaggagaaggcggtggatgactcgctcggctaccccaaggcctacg 3941284

                                                                           
Query: 163     ccaggctctgccgcgccggctccggcgcgggcgcactcggcctcccctacgcccacggcc 222
               |  | |||||||||| |||   |||||  ||||     || ||||| |||| ||||||||
Sbjct: 3941283 cgcgcctctgccgcggcgg---cggcggtggcggcggtggactcccgtacggccacggcc 3941227

                                                           
Query: 223     cgcccggcgccttcctcccctacgtcctccagccccacgaggta 266
               ||||   || ||||||||||||||||||||| || |||||||||
Sbjct: 3941226 cgccgcacggcttcctcccctacgtcctccacccgcacgaggta 3941183



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>dbj|AP002523.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0013F10
          Length = 163095

 Score =  149 bits (75), Expect = 1e-32
 Identities = 117/131 (89%)
 Strand = Plus / Minus

                                                                         
Query: 353   gtgcaggcgctgcgggccaaggagctcaacgagatgttcccggtggtggacgcggaggcg 412
             ||||||||| ||||||| ||||| || |||||||||||||||||||  ||||||||||||
Sbjct: 63010 gtgcaggcgatgcgggcgaaggatctgaacgagatgttcccggtggccgacgcggaggcg 62951

                                                                         
Query: 413   acgcccaccgccaacccgcgcggcttcgccaacctgctctggaagcagctcgaccacctc 472
              |||| || || |||||||| || ||||| |||||||| |||||||||||||||||||||
Sbjct: 62950 gcgccgacggcgaacccgcgggggttcgcgaacctgctgtggaagcagctcgaccacctc 62891

                        
Query: 473   ggcaacgccgg 483
             |||||||||||
Sbjct: 62890 ggcaacgccgg 62880



 Score =  107 bits (54), Expect = 3e-20
 Identities = 137/164 (83%), Gaps = 3/164 (1%)
 Strand = Plus / Minus

                                                                         
Query: 103   cggcgttcacggaggaggagagggcggtggacgacgcgctgggctaccccaaggcctacg 162
             ||||||||||||||||||||| ||||||||| ||| |||| |||||||||||||||||||
Sbjct: 63247 cggcgttcacggaggaggagaaggcggtggatgactcgctcggctaccccaaggcctacg 63188

                                                                         
Query: 163   ccaggctctgccgcgccggctccggcgcgggcgcactcggcctcccctacgcccacggcc 222
             |  | |||||||||| |||   |||||  ||||     || ||||| |||| ||||||||
Sbjct: 63187 cgcgcctctgccgcggcgg---cggcggtggcggcggtggactcccgtacggccacggcc 63131

                                                         
Query: 223   cgcccggcgccttcctcccctacgtcctccagccccacgaggta 266
             ||||   || ||||||||||||||||||||| || |||||||||
Sbjct: 63130 cgccgcacggcttcctcccctacgtcctccacccgcacgaggta 63087



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>ref|XM_550312.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2808

 Score =  141 bits (71), Expect = 2e-30
 Identities = 113/127 (88%)
 Strand = Plus / Plus

                                                                       
Query: 357 aggcgctgcgggccaaggagctcaacgagatgttcccggtggtggacgcggaggcgacgc 416
           ||||| ||||||| ||||| || |||||||||||||||||||  |||||||||||| |||
Sbjct: 220 aggcgatgcgggcgaaggatctgaacgagatgttcccggtggccgacgcggaggcggcgc 279

                                                                       
Query: 417 ccaccgccaacccgcgcggcttcgccaacctgctctggaagcagctcgaccacctcggca 476
           | || || |||||||| || ||||| |||||||| |||||||||||||||||||||||||
Sbjct: 280 cgacggcgaacccgcgggggttcgcgaacctgctgtggaagcagctcgaccacctcggca 339

                  
Query: 477 acgccgg 483
           |||||||
Sbjct: 340 acgccgg 346



 Score =  103 bits (52), Expect = 5e-19
 Identities = 135/162 (83%), Gaps = 3/162 (1%)
 Strand = Plus / Plus

                                                                       
Query: 103 cggcgttcacggaggaggagagggcggtggacgacgcgctgggctaccccaaggcctacg 162
           ||||||||||||||||||||| ||||||||| ||| |||| |||||||||||||||||||
Sbjct: 64  cggcgttcacggaggaggagaaggcggtggatgactcgctcggctaccccaaggcctacg 123

                                                                       
Query: 163 ccaggctctgccgcgccggctccggcgcgggcgcactcggcctcccctacgcccacggcc 222
           |  | |||||||||| |||   |||||  ||||     || ||||| |||| ||||||||
Sbjct: 124 cgcgcctctgccgcggcgg---cggcggtggcggcggtggactcccgtacggccacggcc 180

                                                     
Query: 223 cgcccggcgccttcctcccctacgtcctccagccccacgagg 264
           ||||   || ||||||||||||||||||||| || |||||||
Sbjct: 181 cgccgcacggcttcctcccctacgtcctccacccgcacgagg 222



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>dbj|AK102552.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033097C16, full
           insert sequence
          Length = 2807

 Score =  141 bits (71), Expect = 2e-30
 Identities = 113/127 (88%)
 Strand = Plus / Plus

                                                                       
Query: 357 aggcgctgcgggccaaggagctcaacgagatgttcccggtggtggacgcggaggcgacgc 416
           ||||| ||||||| ||||| || |||||||||||||||||||  |||||||||||| |||
Sbjct: 220 aggcgatgcgggcgaaggatctgaacgagatgttcccggtggccgacgcggaggcggcgc 279

                                                                       
Query: 417 ccaccgccaacccgcgcggcttcgccaacctgctctggaagcagctcgaccacctcggca 476
           | || || |||||||| || ||||| |||||||| |||||||||||||||||||||||||
Sbjct: 280 cgacggcgaacccgcgggggttcgcgaacctgctgtggaagcagctcgaccacctcggca 339

                  
Query: 477 acgccgg 483
           |||||||
Sbjct: 340 acgccgg 346



 Score =  103 bits (52), Expect = 5e-19
 Identities = 135/162 (83%), Gaps = 3/162 (1%)
 Strand = Plus / Plus

                                                                       
Query: 103 cggcgttcacggaggaggagagggcggtggacgacgcgctgggctaccccaaggcctacg 162
           ||||||||||||||||||||| ||||||||| ||| |||| |||||||||||||||||||
Sbjct: 64  cggcgttcacggaggaggagaaggcggtggatgactcgctcggctaccccaaggcctacg 123

                                                                       
Query: 163 ccaggctctgccgcgccggctccggcgcgggcgcactcggcctcccctacgcccacggcc 222
           |  | |||||||||| |||   |||||  ||||     || ||||| |||| ||||||||
Sbjct: 124 cgcgcctctgccgcggcgg---cggcggtggcggcggtggactcccgtacggccacggcc 180

                                                     
Query: 223 cgcccggcgccttcctcccctacgtcctccagccccacgagg 264
           ||||   || ||||||||||||||||||||| || |||||||
Sbjct: 181 cgccgcacggcttcctcccctacgtcctccacccgcacgagg 222



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>gb|AC137928.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0040B10,
             complete sequence
          Length = 150825

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 110/129 (85%), Gaps = 1/129 (0%)
 Strand = Plus / Plus

                                                                         
Query: 353   gtgcaggcgctgcgggccaaggagctcaacgagatgttcccggtggtggacgcggaggcg 412
             ||||||||| ||| ||| ||||| || |||||||||||||||||||  || |||||||||
Sbjct: 84681 gtgcaggcgatgccggcgaaggatctgaacgagatgttcccggtggccgaagcggaggcg 84740

                                                                         
Query: 413   acgcccaccgccaacccgcgcggcttcgccaacctgctctggaagcagctcgaccacctc 472
              ||||  |||| |||||||| || ||||  |||||||| || |||||||| |||||||||
Sbjct: 84741 gcgccg-ccgcgaacccgcgggggttcgtgaacctgctgtgcaagcagcttgaccacctc 84799

                      
Query: 473   ggcaacgcc 481
             |||||||||
Sbjct: 84800 ggcaacgcc 84808



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>gb|AC137620.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
            OSJNBb0014K18, complete sequence
          Length = 123508

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 110/129 (85%), Gaps = 1/129 (0%)
 Strand = Plus / Plus

                                                                        
Query: 353  gtgcaggcgctgcgggccaaggagctcaacgagatgttcccggtggtggacgcggaggcg 412
            ||||||||| ||| ||| ||||| || |||||||||||||||||||  || |||||||||
Sbjct: 9231 gtgcaggcgatgccggcgaaggatctgaacgagatgttcccggtggccgaagcggaggcg 9290

                                                                        
Query: 413  acgcccaccgccaacccgcgcggcttcgccaacctgctctggaagcagctcgaccacctc 472
             ||||  |||| |||||||| || ||||  |||||||| || |||||||| |||||||||
Sbjct: 9291 gcgccg-ccgcgaacccgcgggggttcgtgaacctgctgtgcaagcagcttgaccacctc 9349

                     
Query: 473  ggcaacgcc 481
            |||||||||
Sbjct: 9350 ggcaacgcc 9358



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 110/129 (85%), Gaps = 1/129 (0%)
 Strand = Plus / Plus

                                                                            
Query: 353      gtgcaggcgctgcgggccaaggagctcaacgagatgttcccggtggtggacgcggaggcg 412
                ||||||||| ||| ||| ||||| || |||||||||||||||||||  || |||||||||
Sbjct: 19756607 gtgcaggcgatgccggcgaaggatctgaacgagatgttcccggtggccgaagcggaggcg 19756666

                                                                            
Query: 413      acgcccaccgccaacccgcgcggcttcgccaacctgctctggaagcagctcgaccacctc 472
                 ||||  |||| |||||||| || ||||  |||||||| || |||||||| |||||||||
Sbjct: 19756667 gcgccg-ccgcgaacccgcgggggttcgtgaacctgctgtgcaagcagcttgaccacctc 19756725

                         
Query: 473      ggcaacgcc 481
                |||||||||
Sbjct: 19756726 ggcaacgcc 19756734



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>ref|XM_475221.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1011

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 105/124 (84%), Gaps = 1/124 (0%)
 Strand = Plus / Plus

                                                                       
Query: 358 ggcgctgcgggccaaggagctcaacgagatgttcccggtggtggacgcggaggcgacgcc 417
           |||| ||| ||| ||||| || |||||||||||||||||||  || ||||||||| ||||
Sbjct: 157 ggcgatgccggcgaaggatctgaacgagatgttcccggtggccgaagcggaggcggcgcc 216

                                                                       
Query: 418 caccgccaacccgcgcggcttcgccaacctgctctggaagcagctcgaccacctcggcaa 477
             |||| |||||||| || ||||  |||||||| || |||||||| ||||||||||||||
Sbjct: 217 g-ccgcgaacccgcgggggttcgtgaacctgctgtgcaagcagcttgaccacctcggcaa 275

               
Query: 478 cgcc 481
           ||||
Sbjct: 276 cgcc 279



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 108/131 (82%)
 Strand = Plus / Plus

                                                                            
Query: 353      gtgcaggcgctgcgggccaaggagctcaacgagatgttcccggtggtggacgcggaggcg 412
                ||||||||| | ||||| ||||| || |||||||||||||||||||   ||||||||| |
Sbjct: 28125194 gtgcaggcgatacgggcaaaggatctgaacgagatgttcccggtggccaacgcggaggtg 28125253

                                                                            
Query: 413      acgcccaccgccaacccgcgcggcttcgccaacctgctctggaagcagctcgaccacctc 472
                 |||| |     |||||||| || ||||| |||||||| |||||||||||| ||||||||
Sbjct: 28125254 gcgccgatgttgaacccgcgagggttcgcgaacctgctgtggaagcagctcaaccacctc 28125313

                           
Query: 473      ggcaacgccgg 483
                || ||| ||||
Sbjct: 28125314 ggtaacaccgg 28125324



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>dbj|AP004071.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1717_A09
          Length = 203132

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 108/131 (82%)
 Strand = Plus / Plus

                                                                          
Query: 353    gtgcaggcgctgcgggccaaggagctcaacgagatgttcccggtggtggacgcggaggcg 412
              ||||||||| | ||||| ||||| || |||||||||||||||||||   ||||||||| |
Sbjct: 114841 gtgcaggcgatacgggcaaaggatctgaacgagatgttcccggtggccaacgcggaggtg 114900

                                                                          
Query: 413    acgcccaccgccaacccgcgcggcttcgccaacctgctctggaagcagctcgaccacctc 472
               |||| |     |||||||| || ||||| |||||||| |||||||||||| ||||||||
Sbjct: 114901 gcgccgatgttgaacccgcgagggttcgcgaacctgctgtggaagcagctcaaccacctc 114960

                         
Query: 473    ggcaacgccgg 483
              || ||| ||||
Sbjct: 114961 ggtaacaccgg 114971



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>ref|XM_467193.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 438

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 98/119 (82%)
 Strand = Plus / Plus

                                                                       
Query: 365 cgggccaaggagctcaacgagatgttcccggtggtggacgcggaggcgacgcccaccgcc 424
           ||||| ||||| || |||||||||||||||||||   ||||||||| | |||| |     
Sbjct: 238 cgggcaaaggatctgaacgagatgttcccggtggccaacgcggaggtggcgccgatgttg 297

                                                                      
Query: 425 aacccgcgcggcttcgccaacctgctctggaagcagctcgaccacctcggcaacgccgg 483
           |||||||| || ||||| |||||||| |||||||||||| |||||||||| ||| ||||
Sbjct: 298 aacccgcgagggttcgcgaacctgctgtggaagcagctcaaccacctcggtaacaccgg 356



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>gb|AE004876.1| Pseudomonas aeruginosa PAO1, section 437 of 529 of the complete
            genome
          Length = 16704

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 378  tcaacgagatgttcccggtggtg 400
            |||||||||||||||||||||||
Sbjct: 1793 tcaacgagatgttcccggtggtg 1771



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>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 378     tcaacgagatgttcccggtggtg 400
               |||||||||||||||||||||||
Sbjct: 4803786 tcaacgagatgttcccggtggtg 4803764



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>emb|AL138883.12| Human DNA sequence from clone RP1-23G18 on chromosome 6 Contains the 5'
             end of the GMPR gene for monophosphate reductase and a CpG
             island, complete sequence
          Length = 45974

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 234   ttcctcccctacgtcctccag 254
             |||||||||||||||||||||
Sbjct: 29490 ttcctcccctacgtcctccag 29470



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>gb|AF314647.1|AF314647 Plasmodium vivax CG4 (cg4) gene, partial cds
          Length = 315

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 97  cgatggcggcgttcacggaggaggagagg 125
           |||||| ||||||||||||| ||||||||
Sbjct: 110 cgatggtggcgttcacggagaaggagagg 138



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>gb|M29297.1|STMTN4556 Streptomyces fradiae transposon Tn4556 transposase, resolvase, and
            unknown protein genes, complete cds; and unknown protein
            gene, partial cds
          Length = 6806

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 124  gggcggtggacgacgcgctgg 144
            |||||||||||||||||||||
Sbjct: 1115 gggcggtggacgacgcgctgg 1135



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>gb|AC096772.3| Homo sapiens BAC clone RP11-801F7 from 2, complete sequence
          Length = 177733

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 286  cccgcggatccgcccgccctt 306
            |||||||||||||||||||||
Sbjct: 2442 cccgcggatccgcccgccctt 2422



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>dbj|D14464.1|FVBCR1 Flavobacterium sp. gene for creatinase, complete cds
          Length = 1723

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 368  gccaaggagctcaacgagatgttcc 392
            |||||||||||||||||||| ||||
Sbjct: 1340 gccaaggagctcaacgagatcttcc 1364



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>dbj|D00656.1|FVBCRE Flavobacterium sp. gene for creatinase, complete cds
          Length = 1956

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 368  gccaaggagctcaacgagatgttcc 392
            |||||||||||||||||||| ||||
Sbjct: 1493 gccaaggagctcaacgagatcttcc 1517



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>ref|XM_878477.1| PREDICTED: Bos taurus similar to RNA polymerase II elongation
           factor ELL (Eleven-nineteen lysine-rich leukemia
           protein), transcript variant 2 (LOC506578), mRNA
          Length = 3957

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 156 gcctacgccaggctctgccgcgcc 179
           |||| |||||||||||||||||||
Sbjct: 419 gcctgcgccaggctctgccgcgcc 396



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>ref|XM_583044.2| PREDICTED: Bos taurus similar to RNA polymerase II elongation
           factor ELL (Eleven-nineteen lysine-rich leukemia
           protein), transcript variant 1 (LOC506578), mRNA
          Length = 3939

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 156 gcctacgccaggctctgccgcgcc 179
           |||| |||||||||||||||||||
Sbjct: 419 gcctgcgccaggctctgccgcgcc 396



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>ref|XM_502225.1| Yarrowia lipolytica CLIB122, YALI0C24420g predicted mRNA
          Length = 1206

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 51  tccgtagacaacagcggtac 70
           ||||||||||||||||||||
Sbjct: 981 tccgtagacaacagcggtac 962



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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 173     ccgcgccggctccggcgcgg 192
               ||||||||||||||||||||
Sbjct: 2957044 ccgcgccggctccggcgcgg 2957063



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>gb|AC091776.19| Chlamydomonas reinhardtii clone cr-4i21, complete sequence
          Length = 48498

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 173   ccgcgccggctccggcgcgggcgc 196
             |||||||||| |||||||||||||
Sbjct: 35829 ccgcgccggcgccggcgcgggcgc 35852



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>gb|AC090435.28| Chlamydomonas reinhardtii clone cr-32m22, complete sequence
          Length = 79677

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 173   ccgcgccggctccggcgcgggcgc 196
             |||||||||| |||||||||||||
Sbjct: 14542 ccgcgccggcgccggcgcgggcgc 14565



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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 461     ctcgaccacctcggcaacgc 480
               ||||||||||||||||||||
Sbjct: 1628817 ctcgaccacctcggcaacgc 1628798



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>gb|AC027312.4| Homo sapiens chromosome 5 clone CTC-265N9, complete sequence
          Length = 126036

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 302   cccttcgctccctcccccgcctcc 325
             |||||| |||||||||||||||||
Sbjct: 87450 cccttctctccctcccccgcctcc 87427



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>gb|AC157774.5| Mus musculus chromosome 8, clone RP23-423E20, complete sequence
          Length = 198967

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 361   gctgcgggccaaggagctca 380
             ||||||||||||||||||||
Sbjct: 31117 gctgcgggccaaggagctca 31098



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 398     gtggacgcggaggcgacgcc 417
               ||||||||||||||||||||
Sbjct: 3936048 gtggacgcggaggcgacgcc 3936029



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 302      cccttcgctccctcccccgc 321
                ||||||||||||||||||||
Sbjct: 15937738 cccttcgctccctcccccgc 15937757



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>gb|AY158472.1| Ovis aries immunoglobulin V lambda chain 4.1.5 gene, partial cds
          Length = 439

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 444 acctgctctggaagcagctc 463
           ||||||||||||||||||||
Sbjct: 204 acctgctctggaagcagctc 223



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>gb|AY899214.1| Streptomyces aizunensis strain NRRL B-11277 glycosyltransferase,
             polyketide synthase type Is, acyl transferase, membrane
             protein, ABC transporter, sugar dehydratase/epimerase,
             sugar epimerase, sugar nucleotidyltransferase, sugar
             dehydratase/epimerase, thioesterase, acyl CoA ligase,
             amine oxidase, phosphopantetheinyl transferase,
             transcriptional regulator,
             carboxylase/carboxyltransferase, amidinohydrolase, amide
             synthetase, 5-aminolevulinate synthase, and acyl CoA
             ligase genes, complete cds; and unknown gene
          Length = 161719

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 351   ccgtgcaggcgctgcgggcc 370
             ||||||||||||||||||||
Sbjct: 57246 ccgtgcaggcgctgcgggcc 57265



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>gb|AC084797.5| Homo sapiens chromosome 16 clone RP11-62O3, complete sequence
          Length = 163855

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 302   cccttcgctccctcccccgcctcc 325
             |||||| |||||||||||||||||
Sbjct: 46224 cccttccctccctcccccgcctcc 46201



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>ref|XM_341896.2| PREDICTED: Rattus norvegicus stromal interaction molecule 1
           (predicted) (Stim1_predicted), mRNA
          Length = 4037

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 302 cccttcgctccctcccccgcctccgtgc 329
           |||||| ||||||||||| |||||||||
Sbjct: 186 cccttctctccctcccccacctccgtgc 213



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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 456     agcagctcgaccacctcggc 475
               ||||||||||||||||||||
Sbjct: 4434000 agcagctcgaccacctcggc 4433981



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>dbj|AP005641.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OSJNBa0027N13
          Length = 179669

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 302    cccttcgctccctcccccgc 321
              ||||||||||||||||||||
Sbjct: 177252 cccttcgctccctcccccgc 177271



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>dbj|AP005642.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0040K22
          Length = 155832

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 302   cccttcgctccctcccccgc 321
             ||||||||||||||||||||
Sbjct: 19140 cccttcgctccctcccccgc 19159



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>gb|AE014299.1| Shewanella oneidensis MR-1, complete genome
          Length = 4969803

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 419     accgccaacccgcgcggctt 438
               ||||||||||||||||||||
Sbjct: 3636027 accgccaacccgcgcggctt 3636046



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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 353     gtgcaggcgctgcgggccaa 372
               ||||||||||||||||||||
Sbjct: 3925047 gtgcaggcgctgcgggccaa 3925028



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 398     gtggacgcggaggcgacgcc 417
               ||||||||||||||||||||
Sbjct: 3936022 gtggacgcggaggcgacgcc 3936003



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>emb|AL590446.1|CNS07EGD chromosome VI of strain GB-M1 of Encephalitozoon cuniculi (Microspora)
          Length = 220294

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 368   gccaaggagctcaacgagatgttc 391
             ||||||||||||| ||||||||||
Sbjct: 84289 gccaaggagctcagcgagatgttc 84312



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>emb|AL732376.2|CNS08C8Z Oryza sativa chromosome 12, . BAC OSJNBa0086B10 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 152090

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 398   gtggacgcggaggcgacgcc 417
             ||||||||||||||||||||
Sbjct: 98024 gtggacgcggaggcgacgcc 98005



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>emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB122 of Yarrowia lipolytica
          Length = 3272609

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 51      tccgtagacaacagcggtac 70
               ||||||||||||||||||||
Sbjct: 3255830 tccgtagacaacagcggtac 3255811



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>emb|AL596104.24| Mouse DNA sequence from clone RP23-326P8 on chromosome 11, complete
             sequence
          Length = 164530

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 232   ccttcctcccctacgtcctccagcccca 259
             |||||||| ||||| |||||||||||||
Sbjct: 50035 ccttcctctcctacctcctccagcccca 50008



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>emb|AJ415104.1|HSA415104 Homo sapiens partial IGVL1b gene for immunoglobulin lambda chain
           variable region, donor BJ, cell109
          Length = 270

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 444 acctgctctggaagcagctc 463
           ||||||||||||||||||||
Sbjct: 25  acctgctctggaagcagctc 44


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,645,753
Number of Sequences: 3902068
Number of extensions: 3645753
Number of successful extensions: 75050
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 73810
Number of HSP's gapped (non-prelim): 1236
length of query: 486
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 464
effective length of database: 17,147,199,772
effective search space: 7956300694208
effective search space used: 7956300694208
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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