Clone Name | bastl20c11 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 256 bits (129), Expect = 6e-65 Identities = 209/235 (88%), Gaps = 3/235 (1%) Strand = Plus / Minus Query: 6 tgatgacacactaataaagagacaataccgtaagcttgcgcttttgctgcatcccgacaa 65 |||||||||||||||||||| |||||| ||||||||||| |||||||| ||||| ||||| Sbjct: 19690572 tgatgacacactaataaagaaacaatatcgtaagcttgctcttttgctacatccagacaa 19690513 Query: 66 gaacaagtttgcaggtgcagaggcagcatttaaattagtgggagaagcaaacatgacgct 125 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 19690512 gaacaattttgcaggtgcagaggcagcatttaaattagtgggagaagcaaacatgacgct 19690453 Query: 126 tacagacagctcaaaacgtactgcctatgacatgaaaaggagagtctcagtcagagttgg 185 ||||||| ||||||||||| ||| ||||||||||||||| | | |||||||||| |||| Sbjct: 19690452 tacagaccgctcaaaacgttctgtctatgacatgaaaagaaatgcctcagtcagaattgg 19690393 Query: 186 tgcagcaagaccatccccttaccagcagtcaaggagagctgctcctgttagacct 240 | | ||||| | ||||| ||||| ||||||||| |||| |||||||||||| Sbjct: 19690392 ttctgcaag---agttccttatcagcaatcaaggagaactgcacctgttagacct 19690341 Score = 99.6 bits (50), Expect = 8e-18 Identities = 121/145 (83%) Strand = Plus / Minus Query: 279 acaaacattctggaccatgtgttcaagttgtggcatgagatatcagcactacactgcgat 338 ||||||||| |||||||| || ||| |||||||||| ||||||| ||||| | | || Sbjct: 19690269 acaaacattttggaccatatgcccaacttgtggcatgcgatatcaatactacctttcaat 19690210 Query: 339 gttgaagaaagctatccgttgtcagagttgtttgaagccttttattgcacatgatataaa 398 |||||||||||| |||||||||||| ||| |||||||| ||| |||||| |||| |||| Sbjct: 19690209 attgaagaaagctctccgttgtcagaattgcttgaagccctttgttgcacttgatttaaa 19690150 Query: 399 tgagcanactgttccttccggggca 423 ||||| |||||||||| |||||| Sbjct: 19690149 cgagcaagctgttccttctggggca 19690125
>dbj|AP005723.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0001B21 Length = 143722 Score = 256 bits (129), Expect = 6e-65 Identities = 209/235 (88%), Gaps = 3/235 (1%) Strand = Plus / Minus Query: 6 tgatgacacactaataaagagacaataccgtaagcttgcgcttttgctgcatcccgacaa 65 |||||||||||||||||||| |||||| ||||||||||| |||||||| ||||| ||||| Sbjct: 75028 tgatgacacactaataaagaaacaatatcgtaagcttgctcttttgctacatccagacaa 74969 Query: 66 gaacaagtttgcaggtgcagaggcagcatttaaattagtgggagaagcaaacatgacgct 125 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 74968 gaacaattttgcaggtgcagaggcagcatttaaattagtgggagaagcaaacatgacgct 74909 Query: 126 tacagacagctcaaaacgtactgcctatgacatgaaaaggagagtctcagtcagagttgg 185 ||||||| ||||||||||| ||| ||||||||||||||| | | |||||||||| |||| Sbjct: 74908 tacagaccgctcaaaacgttctgtctatgacatgaaaagaaatgcctcagtcagaattgg 74849 Query: 186 tgcagcaagaccatccccttaccagcagtcaaggagagctgctcctgttagacct 240 | | ||||| | ||||| ||||| ||||||||| |||| |||||||||||| Sbjct: 74848 ttctgcaag---agttccttatcagcaatcaaggagaactgcacctgttagacct 74797 Score = 99.6 bits (50), Expect = 8e-18 Identities = 121/145 (83%) Strand = Plus / Minus Query: 279 acaaacattctggaccatgtgttcaagttgtggcatgagatatcagcactacactgcgat 338 ||||||||| |||||||| || ||| |||||||||| ||||||| ||||| | | || Sbjct: 74725 acaaacattttggaccatatgcccaacttgtggcatgcgatatcaatactacctttcaat 74666 Query: 339 gttgaagaaagctatccgttgtcagagttgtttgaagccttttattgcacatgatataaa 398 |||||||||||| |||||||||||| ||| |||||||| ||| |||||| |||| |||| Sbjct: 74665 attgaagaaagctctccgttgtcagaattgcttgaagccctttgttgcacttgatttaaa 74606 Query: 399 tgagcanactgttccttccggggca 423 ||||| |||||||||| |||||| Sbjct: 74605 cgagcaagctgttccttctggggca 74581
>dbj|AK070898.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023071K08, full insert sequence Length = 4268 Score = 256 bits (129), Expect = 6e-65 Identities = 209/235 (88%), Gaps = 3/235 (1%) Strand = Plus / Plus Query: 6 tgatgacacactaataaagagacaataccgtaagcttgcgcttttgctgcatcccgacaa 65 |||||||||||||||||||| |||||| ||||||||||| |||||||| ||||| ||||| Sbjct: 978 tgatgacacactaataaagaaacaatatcgtaagcttgctcttttgctacatccagacaa 1037 Query: 66 gaacaagtttgcaggtgcagaggcagcatttaaattagtgggagaagcaaacatgacgct 125 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1038 gaacaattttgcaggtgcagaggcagcatttaaattagtgggagaagcaaacatgacgct 1097 Query: 126 tacagacagctcaaaacgtactgcctatgacatgaaaaggagagtctcagtcagagttgg 185 ||||||| ||||||||||| ||| ||||||||||||||| | | |||||||||| |||| Sbjct: 1098 tacagaccgctcaaaacgttctgtctatgacatgaaaagaaatgcctcagtcagaattgg 1157 Query: 186 tgcagcaagaccatccccttaccagcagtcaaggagagctgctcctgttagacct 240 | | ||||| | ||||| ||||| ||||||||| |||| |||||||||||| Sbjct: 1158 ttctgcaag---agttccttatcagcaatcaaggagaactgcacctgttagacct 1209 Score = 99.6 bits (50), Expect = 8e-18 Identities = 121/145 (83%) Strand = Plus / Plus Query: 279 acaaacattctggaccatgtgttcaagttgtggcatgagatatcagcactacactgcgat 338 ||||||||| |||||||| || ||| |||||||||| ||||||| ||||| | | || Sbjct: 1281 acaaacattttggaccatatgcccaacttgtggcatgcgatatcaatactacctttcaat 1340 Query: 339 gttgaagaaagctatccgttgtcagagttgtttgaagccttttattgcacatgatataaa 398 |||||||||||| |||||||||||| ||| |||||||| ||| |||||| |||| |||| Sbjct: 1341 attgaagaaagctctccgttgtcagaattgcttgaagccctttgttgcacttgatttaaa 1400 Query: 399 tgagcanactgttccttccggggca 423 ||||| |||||||||| |||||| Sbjct: 1401 cgagcaagctgttccttctggggca 1425
>ref|NM_111370.1| Arabidopsis thaliana heat shock protein binding / unfolded protein binding AT3G04980 mRNA, complete cds Length = 3498 Score = 46.1 bits (23), Expect = 0.11 Identities = 74/91 (81%) Strand = Plus / Plus Query: 28 caataccgtaagcttgcgcttttgctgcatcccgacaagaacaagtttgcaggtgcagag 87 |||||| | ||||||||||| | || ||||| ||||| ||||||||||| || |||||| Sbjct: 199 caatacagaaagcttgcgctgcttctccatccagacaaaaacaagtttgctggagcagag 258 Query: 88 gcagcatttaaattagtgggagaagcaaaca 118 || || || || || || || |||||||||| Sbjct: 259 gctgctttcaagttggttggggaagcaaaca 289
>gb|AC009465.7|AC009465 Arabidopsis thaliana chromosome 3 BAC T9J14 genomic sequence, complete sequence Length = 93234 Score = 46.1 bits (23), Expect = 0.11 Identities = 74/91 (81%) Strand = Plus / Plus Query: 28 caataccgtaagcttgcgcttttgctgcatcccgacaagaacaagtttgcaggtgcagag 87 |||||| | ||||||||||| | || ||||| ||||| ||||||||||| || |||||| Sbjct: 22962 caatacagaaagcttgcgctgcttctccatccagacaaaaacaagtttgctggagcagag 23021 Query: 88 gcagcatttaaattagtgggagaagcaaaca 118 || || || || || || || |||||||||| Sbjct: 23022 gctgctttcaagttggttggggaagcaaaca 23052
>gb|AC165380.3| Colobus guereza clone CH272-85C5, complete sequence Length = 199248 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Minus Query: 373 aagccttttattgcacatgatataaa 398 |||||||||||||| ||||||||||| Sbjct: 196870 aagccttttattgcccatgatataaa 196845
>gb|AC156348.3| Colobus guereza clone CH272-110A23, complete sequence Length = 115353 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Minus Query: 373 aagccttttattgcacatgatataaa 398 |||||||||||||| ||||||||||| Sbjct: 4209 aagccttttattgcccatgatataaa 4184
>dbj|AP006382.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT32J05, TM0238, complete sequence Length = 131947 Score = 44.1 bits (22), Expect = 0.42 Identities = 31/34 (91%) Strand = Plus / Minus Query: 53 tgcatcccgacaagaacaagtttgcaggtgcaga 86 ||||||| ||||| ||||||||||| |||||||| Sbjct: 110098 tgcatcctgacaaaaacaagtttgctggtgcaga 110065
>gb|AC011146.10| Homo sapiens chromosome 8, clone RP11-2F15, complete sequence Length = 156951 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 382 attgcacatgatataaatgag 402 ||||||||||||||||||||| Sbjct: 144420 attgcacatgatataaatgag 144400
>gb|AC093333.7| Homo sapiens chromosome 8, clone RP11-470N15, complete sequence Length = 187680 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 382 attgcacatgatataaatgag 402 ||||||||||||||||||||| Sbjct: 50593 attgcacatgatataaatgag 50573
>dbj|AP003027.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-25I9, complete sequence Length = 167067 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 83 cagaggcagcatttaaattag 103 ||||||||||||||||||||| Sbjct: 151632 cagaggcagcatttaaattag 151612
>emb|AL121839.3|CNS01DSQ Human chromosome 14 DNA sequence BAC R-747H7 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 200853 Score = 42.1 bits (21), Expect = 1.7 Identities = 30/33 (90%) Strand = Plus / Plus Query: 294 catgtgttcaagttgtggcatgagatatcagca 326 |||||||||||||| || ||| ||||||||||| Sbjct: 171339 catgtgttcaagttttgtcattagatatcagca 171371
>ref|NM_193459.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1143 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 tgcatcccgacaagaacaag 72 |||||||||||||||||||| Sbjct: 470 tgcatcccgacaagaacaag 489
>gb|AC131297.11| Mus musculus chromosome 8, clone RP23-284E15, complete sequence Length = 188817 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 catccccttaccagcagtca 216 |||||||||||||||||||| Sbjct: 131497 catccccttaccagcagtca 131478
>gb|BC073404.1| Xenopus laevis MGC80867 protein, mRNA (cDNA clone MGC:80867 IMAGE:5514834), complete cds Length = 1955 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 tgcatcccgacaagaacaag 72 |||||||||||||||||||| Sbjct: 388 tgcatcccgacaagaacaag 407
>emb|CR753839.12| Zebrafish DNA sequence from clone CH211-12K18 in linkage group 14, complete sequence Length = 169064 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 378 ttttattgcacatgatataa 397 |||||||||||||||||||| Sbjct: 98358 ttttattgcacatgatataa 98339
>gb|AC126440.3| Mus musculus BAC clone RP23-413M14 from chromosome 14, complete sequence Length = 207346 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 154 gacatgaaaaggagagtctc 173 |||||||||||||||||||| Sbjct: 141750 gacatgaaaaggagagtctc 141769
>gb|AC069243.16| Homo sapiens 3 BAC RP11-407H3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 190909 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 303 aagttgtggcatgagatatc 322 |||||||||||||||||||| Sbjct: 167112 aagttgtggcatgagatatc 167131
>emb|CR392335.5| Zebrafish DNA sequence from clone CH211-161C21 in linkage group 1, complete sequence Length = 103171 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 378 ttttattgcacatgatataa 397 |||||||||||||||||||| Sbjct: 71675 ttttattgcacatgatataa 71656
>gb|AC015954.9| Homo sapiens chromosome 18, clone RP11-24L5, complete sequence Length = 180507 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 163 aggagagtctcagtcagagt 182 |||||||||||||||||||| Sbjct: 11806 aggagagtctcagtcagagt 11825
>gb|AF249328.2|AF249328 Penicillium purpurogenum endo-1,4-beta-D-xylanase A (XynA) gene, complete cds Length = 3621 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 335 cgatgttgaagaaagctatc 354 |||||||||||||||||||| Sbjct: 962 cgatgttgaagaaagctatc 943
>gb|AC021766.6| Homo sapiens, clone RP11-9H20, complete sequence Length = 151558 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 163 aggagagtctcagtcagagt 182 |||||||||||||||||||| Sbjct: 128193 aggagagtctcagtcagagt 128212
>ref|XM_394691.2| PREDICTED: Apis mellifera similar to Probable ATP-dependent RNA helicase DDX20 (DEAD-box protein 20) (DEAD-box protein DP 103) (Component of gems 3) (Gemin3) (Regulator of steroidogenic factor-1) (ROSF-1) (LOC411217), mRNA Length = 2328 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 380 ttattgcacatgatataaat 399 |||||||||||||||||||| Sbjct: 11 ttattgcacatgatataaat 30
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 tgcatcccgacaagaacaag 72 |||||||||||||||||||| Sbjct: 20984805 tgcatcccgacaagaacaag 20984824
>gb|AC079402.5| Homo sapiens BAC clone RP11-597E15 from 2, complete sequence Length = 86973 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 ttgcaggtgcagaggcagca 93 |||||||||||||||||||| Sbjct: 32171 ttgcaggtgcagaggcagca 32190
>gb|AC022968.9| Homo sapiens chromosome 18, clone RP11-421N8, complete sequence Length = 187277 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 370 ttgaagccttttattgcaca 389 |||||||||||||||||||| Sbjct: 36138 ttgaagccttttattgcaca 36157
>dbj|AP003372.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1014_G12 Length = 158830 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 tgcatcccgacaagaacaag 72 |||||||||||||||||||| Sbjct: 48007 tgcatcccgacaagaacaag 48026
>emb|CR381621.4| Zebrafish DNA sequence from clone DKEY-101C24 in linkage group 20, complete sequence Length = 199635 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 362 agagttgtttgaagcctttt 381 |||||||||||||||||||| Sbjct: 52003 agagttgtttgaagcctttt 51984
>emb|AL845460.9| Mouse DNA sequence from clone RP23-453H2 on chromosome 2, complete sequence Length = 172295 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 208 cagcagtcaaggagagctgc 227 |||||||||||||||||||| Sbjct: 71908 cagcagtcaaggagagctgc 71889 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,372,802 Number of Sequences: 3902068 Number of extensions: 4372802 Number of successful extensions: 75183 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 29 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 75101 Number of HSP's gapped (non-prelim): 82 length of query: 484 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 462 effective length of database: 17,147,199,772 effective search space: 7922006294664 effective search space used: 7922006294664 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)